svn commit: r1899823 - /ctakes/trunk/runPiper.sh

[se...@apache.org]

Author: seanfinan
Date: Wed Apr 13 21:07:35 2022
New Revision: 1899823

URL: http://svn.apache.org/viewvc?rev=1899823&view=rev
Log:
Simple script that allows developer to run without packaging.

Added:
    ctakes/trunk/runPiper.sh

Added: ctakes/trunk/runPiper.sh
URL: http://svn.apache.org/viewvc/ctakes/trunk/runPiper.sh?rev=1899823&view=auto
==============================================================================
--- ctakes/trunk/runPiper.sh (added)
+++ ctakes/trunk/runPiper.sh Wed Apr 13 21:07:35 2022
@@ -0,0 +1,81 @@
+#!/bin/sh
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+#
+#   Runs the pipeline in the piper file specified by -p (piperfile)
+#   with any other provided parameters.  Standard parameters are:
+#     -i , --inputDir {inputDirectory}
+#     -o , --outputDir {outputDirectory}
+#     -s , --subDir {subDirectory}  (for i/o)
+#     --xmiOut {xmiOutputDirectory} (if different from -o)
+#     -l , --lookupXml {dictionaryConfigFile} (fast only)
+#     --key {umlsPasskey}
+#     -? , --help
+#
+#   Other parameters may be declared in the piper file using the cli command:
+#     cli {parameterName}={singleCharacter}
+#   For instance, for declaration of ParagraphAnnotator path to regex file optional parameter PARAGRAPH_TYPES_PATH,
+#   in the custom piper file add the line:
+#     cli PARAGRAPH_TYPES_PATH=t
+#   and when executing this script use:
+#      runPiperFile -p path/to/my/custom.piper -t path/to/my/custom.bsv
+#
+# Requires JAVA JDK 1.8+
+#
+
+USER_DIR=`pwd`
+
+# Only set CTAKES_HOME if not already set
+if [ -z "$CTAKES_HOME" ]; then
+   echo Value of cTAKES Home CTAKES_HOME is not set.  Attempting to resolve ...
+#   PRG="$0"
+   SCRIPT_DIR=`dirname "$0"`
+   echo $SCRIPT_DIR
+   cd $SCRIPT_DIR
+   CTAKES_HOME=`pwd`
+fi
+
+echo Changing directory into cTAKES Home Directory $CTAKES_HOME
+cd $CTAKES_HOME
+echo
+
+CTAKES_CLASS_PATH=.
+# Add compiled classes of each module to the ctakes class path.
+# These classes should be created using mvn compile
+for MODULE in `ls -d */ | grep -v .*\-res | grep -v target | grep -v resources`; do
+   CTAKES_CLASS_PATH=$CTAKES_CLASS_PATH:${MODULE}target/classes/
+done
+# Add resources of each module to the ctakes class path.
+# These resources are original "source" resources, not what might be in a root /resources/ directory.
+for MODULE_RESOURCE in `ls -d */ | grep .*\-res`; do
+   CTAKES_CLASS_PATH=$CTAKES_CLASS_PATH:${MODULE_RESOURCE}src/main/resources/
+done
+
+echo Using cTAKES Class Path $CTAKES_CLASS_PATH
+echo
+
+# The standard cTAKES class to run Piper files.
+PIPER_RUNNER=org.apache.ctakes.core.pipeline.PiperFileRunner
+# The standard cTAKES log4j configuration file.
+LOG_CONF=file:$CTAKES_HOME/config/log4j.xml
+
+# Run a user-specified Piper file with user-specified parameters.
+java -cp $CTAKES_CLASS_PATH -Dlog4j.configuration=$LOG_CONF -Xms512M -Xmx3g $PIPER_RUNNER "$@"
+
+cd $USER_DIR