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Posted to user@spark.apache.org by innowireless TaeYun Kim <ta...@innowireless.co.kr> on 2014/07/10 10:13:29 UTC
A Task failed with java.lang.ArrayIndexOutOfBoundsException at com.ning.compress.lzf.impl.UnsafeChunkDecoder.copyOverlappingLong
Hi,
A Task failed with with java.lang.ArrayIndexOutOfBoundsException at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.copyOverlappingLong.
And the whole job was terminated after repeated task failures.
It ran without any problem several days ago.
Currently we suspect that the cluster is malfunctioning, since from
yesterday Ambari (Hortonworks cluster manager) reports corrupted blocks,
node problems etc. That problems persist even after complete cluster
re-installation. (Our cluster is small - only has 3 data nodes) So, maybe it
is a hardware problem.
Could it be a network problem?
Detailed log is as follows:
----------------------------------------------------------------------------
----
14/07/10 16:33:58 INFO Main: Initializing context
--args is deprecated. Use --arg instead.
14/07/10 16:34:04 INFO Main: Processing
14/07/10 16:37:32 ERROR YarnClientClusterScheduler: Lost executor 4 on
cluster04: remote Akka client disassociated
14/07/10 16:37:32 WARN TaskSetManager: Lost TID 304 (task 1.0:304)
14/07/10 16:37:32 WARN TaskSetManager: Lost TID 303 (task 1.0:303)
14/07/10 16:52:44 WARN TaskSetManager: Lost TID 1614 (task 0.0:359)
14/07/10 16:52:44 WARN TaskSetManager: Loss was due to
java.lang.ArrayIndexOutOfBoundsException
java.lang.ArrayIndexOutOfBoundsException: 65535
at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.copyOverlappingLong(UnsafeChun
kDecoder.java:221)
at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.decodeChunk(UnsafeChunkDecoder
.java:117)
at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.decodeChunk(UnsafeChunkDecoder
.java:66)
at
com.ning.compress.lzf.LZFInputStream.readyBuffer(LZFInputStream.java:339)
at
com.ning.compress.lzf.LZFInputStream.read(LZFInputStream.java:169)
at
java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2310)
at
java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2
323)
at
java.io.ObjectInputStream$BlockDataInputStream.readUTFBody(ObjectInputStream
.java:3063)
at
java.io.ObjectInputStream$BlockDataInputStream.readUTF(ObjectInputStream.jav
a:2864)
at
java.io.ObjectInputStream.readString(ObjectInputStream.java:1638)
at
java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1341)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1990)
at
java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1915)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
at
java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
at
java.io.ObjectInputStream.readObject(ObjectInputStream.java:370)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSeriali
zer.scala:63)
at
org.apache.spark.serializer.DeserializationStream$$anon$1.getNext(Serializer
.scala:125)
at
org.apache.spark.util.NextIterator.hasNext(NextIterator.scala:71)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
at
org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:30
)
at
org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:3
9)
at
org.apache.spark.Aggregator.combineValuesByKey(Aggregator.scala:58)
at
org.apache.spark.rdd.PairRDDFunctions$$anonfun$combineByKey$4.apply(PairRDDF
unctions.scala:107)
at
org.apache.spark.rdd.PairRDDFunctions$$anonfun$combineByKey$4.apply(PairRDDF
unctions.scala:106)
at org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
at org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
at
org.apache.spark.rdd.MappedValuesRDD.compute(MappedValuesRDD.scala:31)
at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
at
org.apache.spark.rdd.MappedValuesRDD.compute(MappedValuesRDD.scala:31)
at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
at
org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111)
at org.apache.spark.scheduler.Task.run(Task.scala:51)
at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:187)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11
45)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6
15)
at java.lang.Thread.run(Thread.java:744)
14/07/10 16:52:45 WARN TaskSetManager: Lost TID 1617 (task 0.0:359)
14/07/10 16:52:54 WARN TaskSetManager: Lost TID 1620 (task 0.0:359)
14/07/10 16:52:54 WARN TaskSetManager: Loss was due to
java.lang.ArrayIndexOutOfBoundsException
java.lang.ArrayIndexOutOfBoundsException
14/07/10 16:52:56 WARN TaskSetManager: Lost TID 1622 (task 0.0:359)
14/07/10 16:52:56 WARN TaskSetManager: Loss was due to
java.lang.ArrayIndexOutOfBoundsException
java.lang.ArrayIndexOutOfBoundsException: 65535
at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.copyOverlappingLong(UnsafeChun
kDecoder.java:221)
at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.decodeChunk(UnsafeChunkDecoder
.java:117)
at
com.ning.compress.lzf.impl.UnsafeChunkDecoder.decodeChunk(UnsafeChunkDecoder
.java:66)
at
com.ning.compress.lzf.LZFInputStream.readyBuffer(LZFInputStream.java:339)
at
com.ning.compress.lzf.LZFInputStream.read(LZFInputStream.java:169)
at
java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2310)
at
java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2
323)
at
java.io.ObjectInputStream$BlockDataInputStream.readUTFBody(ObjectInputStream
.java:3063)
at
java.io.ObjectInputStream$BlockDataInputStream.readUTF(ObjectInputStream.jav
a:2864)
at
java.io.ObjectInputStream.readString(ObjectInputStream.java:1638)
at
java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1341)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1990)
at
java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1915)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
at
java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
at
java.io.ObjectInputStream.readObject(ObjectInputStream.java:370)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSeriali
zer.scala:63)
at
org.apache.spark.serializer.DeserializationStream$$anon$1.getNext(Serializer
.scala:125)
at
org.apache.spark.util.NextIterator.hasNext(NextIterator.scala:71)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
at
org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:30
)
at
org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:3
9)
at
org.apache.spark.Aggregator.combineValuesByKey(Aggregator.scala:58)
at
org.apache.spark.rdd.PairRDDFunctions$$anonfun$combineByKey$4.apply(PairRDDF
unctions.scala:107)
at
org.apache.spark.rdd.PairRDDFunctions$$anonfun$combineByKey$4.apply(PairRDDF
unctions.scala:106)
at org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
at org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
at
org.apache.spark.rdd.MappedValuesRDD.compute(MappedValuesRDD.scala:31)
at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
at
org.apache.spark.rdd.MappedValuesRDD.compute(MappedValuesRDD.scala:31)
at
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
at
org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111)
at org.apache.spark.scheduler.Task.run(Task.scala:51)
at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:187)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11
45)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6
15)
at java.lang.Thread.run(Thread.java:744)
14/07/10 16:52:56 ERROR TaskSetManager: Task 0.0:359 failed 4 times;
aborting job
14/07/10 16:52:56 WARN TaskSetManager: Task 1599 was killed.
14/07/10 16:52:58 INFO Main: Clearing intermediate directory
Exception in thread "main" org.apache.spark.SparkException: Job aborted due
to stage failure: Task 0.0:359 failed 4 times, most recent failure:
Exception failure in TID 1622 on host cluster02:
java.lang.ArrayIndexOutOfBoundsException: 65535
com.ning.compress.lzf.impl.UnsafeChunkDecoder.copyOverlappingLong(UnsafeChun
kDecoder.java:221)
com.ning.compress.lzf.impl.UnsafeChunkDecoder.decodeChunk(UnsafeChunkDecoder
.java:117)
com.ning.compress.lzf.impl.UnsafeChunkDecoder.decodeChunk(UnsafeChunkDecoder
.java:66)
com.ning.compress.lzf.LZFInputStream.readyBuffer(LZFInputStream.java:339)
com.ning.compress.lzf.LZFInputStream.read(LZFInputStream.java:169)
java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2310)
java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2
323)
java.io.ObjectInputStream$BlockDataInputStream.readUTFBody(ObjectInputStream
.java:3063)
java.io.ObjectInputStream$BlockDataInputStream.readUTF(ObjectInputStream.jav
a:2864)
java.io.ObjectInputStream.readString(ObjectInputStream.java:1638)
java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1341)
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1990)
java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1915)
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
java.io.ObjectInputStream.readObject(ObjectInputStream.java:370)
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSeriali
zer.scala:63)
org.apache.spark.serializer.DeserializationStream$$anon$1.getNext(Serializer
.scala:125)
org.apache.spark.util.NextIterator.hasNext(NextIterator.scala:71)
scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:30
)
org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:3
9)
org.apache.spark.Aggregator.combineValuesByKey(Aggregator.scala:58)
org.apache.spark.rdd.PairRDDFunctions$$anonfun$combineByKey$4.apply(PairRDDF
unctions.scala:107)
org.apache.spark.rdd.PairRDDFunctions$$anonfun$combineByKey$4.apply(PairRDDF
unctions.scala:106)
org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
org.apache.spark.rdd.MappedValuesRDD.compute(MappedValuesRDD.scala:31)
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
org.apache.spark.rdd.MappedValuesRDD.compute(MappedValuesRDD.scala:31)
org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111)
org.apache.spark.scheduler.Task.run(Task.scala:51)
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:187)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11
45)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6
15)
java.lang.Thread.run(Thread.java:744)
Driver stacktrace:
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGSchedu
ler$$failJobAndIndependentStages(DAGScheduler.scala:1033)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGSched
uler.scala:1017)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGSched
uler.scala:1015)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:5
9)
at
scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at
org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1015)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply
(DAGScheduler.scala:633)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply
(DAGScheduler.scala:633)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.sca
la:633)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.
applyOrElse(DAGScheduler.scala:1207)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498)
at akka.actor.ActorCell.invoke(ActorCell.scala:456)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237)
at akka.dispatch.Mailbox.run(Mailbox.scala:219)
at
akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDis
patcher.scala:386)
at
scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1
339)
at
scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at
scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java
:107)
Process finished with exit code 1
----------------------------------------------------------------------------
----
Thanks.