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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2018/01/18 23:13:05 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #1166
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1166/display/redirect?page=changes>
Changes:
[seanfinan] CTAKES-491 : simple fhir.
[seanfinan] CTAKES-491 : simple fhir.
------------------------------------------
[...truncated 803.34 KB...]
confidence: 0.0
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
date: <null>
time: <null>
timeClass: "DATE"
role: "Arg1"
participatesIn: <null>
RelationArgument
id: 0
argument: EventMention
sofa: _InitialView
begin: 67
end: 76
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 1.3807402
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
event: Event
id: 0
ontologyConcept: <null>
mentions: <null>
discoveryTechnique: 0
confidence: 0.0
conditional: false
generic: false
subject: <null>
polarity: 0
uncertainty: 0
historyOf: 0
properties: EventProperties
contextualModality: <null>
contextualAspect: <null>
permanence: <null>
category: <null>
aspect: <null>
docTimeRel: <null>
degree: <null>
polarity: 0
role: "Arg2"
participatesIn: <null>
Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 22.088 sec
Running org.apache.ctakes.temporal.ae.BackwardsTimeAnnotatorTest
18 Jan 2018 22:58:41 INFO LvgAnnotator - URL for lvg.properties =<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
18 Jan 2018 22:58:43 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
18 Jan 2018 22:58:43 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
18 Jan 2018 22:58:43 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
18 Jan 2018 22:58:43 INFO LvgCmdApiResourceImpl - config file absolute path = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/file>:<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
18 Jan 2018 22:58:43 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
18 Jan 2018 22:58:43 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/>
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
18 Jan 2018 22:58:43 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
18 Jan 2018 22:58:43 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
18 Jan 2018 22:58:43 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
18 Jan 2018 22:58:56 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
18 Jan 2018 22:58:56 INFO BackwardsTimeAnnotator - Initializing ...
.
18 Jan 2018 22:58:56 INFO BackwardsTimeAnnotator - Finished.
18 Jan 2018 22:58:57 INFO SentenceDetector - Starting processing.
18 Jan 2018 22:58:57 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
18 Jan 2018 22:58:57 INFO LvgAnnotator - process(JCas)
18 Jan 2018 22:58:57 INFO ContextDependentTokenizerAnnotator - process(JCas)
18 Jan 2018 22:58:57 INFO POSTagger - process(JCas)
18 Jan 2018 22:58:57 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
18 Jan 2018 22:58:57 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
18 Jan 2018 22:58:57 INFO BackwardsTimeAnnotatorTest - Time: recently
18 Jan 2018 22:58:57 INFO BackwardsTimeAnnotatorTest - Time class: DATE
18 Jan 2018 22:58:57 INFO BackwardsTimeAnnotatorTest - Time: until 6 months ago
18 Jan 2018 22:58:57 INFO BackwardsTimeAnnotatorTest - Time class: DATE
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.3 sec
Running org.apache.ctakes.temporal.ae.EventAnnotatorTest
18 Jan 2018 22:58:58 INFO LvgAnnotator - URL for lvg.properties =<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
18 Jan 2018 22:58:59 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
18 Jan 2018 22:58:59 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
18 Jan 2018 22:58:59 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
18 Jan 2018 22:58:59 INFO LvgCmdApiResourceImpl - config file absolute path = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/file>:<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties>
18 Jan 2018 22:58:59 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
18 Jan 2018 22:58:59 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/>
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
18 Jan 2018 22:58:59 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
18 Jan 2018 22:58:59 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
18 Jan 2018 22:58:59 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
....................
Results :
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.515s]
[INFO] ctakes-gui-res .................................... SUCCESS [5.784s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.442s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.889s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.497s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [4.919s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.304s]
[INFO] Apache cTAKES common type system .................. SUCCESS [14.098s]
[INFO] Apache cTAKES utils ............................... SUCCESS [6.282s]
[INFO] Apache cTAKES core ................................ SUCCESS [1:14.346s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [4.572s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [4.200s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [38.337s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [6.688s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.422s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [5.411s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.787s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.612s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [4.677s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.780s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.500s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [7.171s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [53.680s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [5.981s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.329s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.685s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.241s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.426s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.643s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.831s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [15:15.363s]
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] ctakes-gui ........................................ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED
[INFO] Apache cTAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 20:54.436s
[INFO] Finished at: Thu Jan 18 23:12:19 UTC 2018
[INFO] Final Memory: 92M/1509M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
[ctakes-trunk-compiletest] $ /bin/bash -xe /tmp/jenkins5486064746810759855.sh
+ rm -fr '/tmp/ctakes-*'
Jenkins build is back to normal : ctakes-trunk-compiletest #1168
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1168/display/redirect>
Build failed in Jenkins: ctakes-trunk-compiletest #1167
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1167/display/redirect>
------------------------------------------
Started by an SCM change
Started by an SCM change
[EnvInject] - Loading node environment variables.
Building remotely on ubuntu-eu2 (ubuntu trusty) in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
java.io.IOException: Failed to mkdirs: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
at hudson.FilePath.mkdirs(FilePath.java:1170)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1200)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:574)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:499)
at hudson.model.Run.execute(Run.java:1724)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:421)
Retrying after 10 seconds
java.io.IOException: Failed to mkdirs: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
at hudson.FilePath.mkdirs(FilePath.java:1170)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1200)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:574)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:499)
at hudson.model.Run.execute(Run.java:1724)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:421)
Retrying after 10 seconds
java.io.IOException: Failed to mkdirs: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
at hudson.FilePath.mkdirs(FilePath.java:1170)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1200)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:574)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:499)
at hudson.model.Run.execute(Run.java:1724)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:421)