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Posted to commits@taverna.apache.org by st...@apache.org on 2017/06/09 15:03:25 UTC
svn commit: r1798236 - in /incubator/taverna/site/trunk/content/community:
publications.md references.md
Author: stain
Date: Fri Jun 9 15:03:25 2017
New Revision: 1798236
URL: http://svn.apache.org/viewvc?rev=1798236&view=rev
Log:
Tidy publication lists
Modified:
incubator/taverna/site/trunk/content/community/publications.md
incubator/taverna/site/trunk/content/community/references.md
Modified: incubator/taverna/site/trunk/content/community/publications.md
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/community/publications.md?rev=1798236&r1=1798235&r2=1798236&view=diff
==============================================================================
--- incubator/taverna/site/trunk/content/community/publications.md (original)
+++ incubator/taverna/site/trunk/content/community/publications.md Fri Jun 9 15:03:25 2017
@@ -22,21 +22,37 @@ Notice: Licensed to the Apache Softwa
### 2017
+
Marek Kasztelnik, Ernesto Coto, Marian Bubak, Maciej Malawski, Piotr Nowakowski, Juan Arenas, Alfredo Saglimbeni, Debora Testi, Alejandro F. Frangi (2017):
**Support for Taverna workflows in the VPH-Share cloud platform**.
In: _Computer Methods and Programs in Biomedicine_ **146** July 2017, pages 37â46.
[https://doi.org/10.1016/j.cmpb.2017.05.006](https://doi.org/10.1016/j.cmpb.2017.05.006)
-**No OA preprint available?**
+**No Open Access preprint available?**
Pinar Alper, Khalid Belhajjame, Carole A. Goble (2017):
**Static analysis of Taverna workflows to predict provenance patterns**.
_Future Generation Computer Systems_ (Available online 16 January 2017).
[https://doi.org/10.1016/j.future.2017.01.004](https://doi.org/10.1016/j.future.2017.01.004)
+Tomasz Miksa, Andreas Rauber (2017):
+**Using ontologies for verification and validation of workflow-based experiments**.
+In: _Web Semantics: Science, Services and Agents on the World Wide Web_ **43** March 2017, pages 25â45.
+[https://doi.org/10.1016/j.websem.2017.01.002](https://doi.org/10.1016/j.websem.2017.01.002)
+[[researchgate]](https://www.researchgate.net/publication/312869477_Using_ontologies_for_verification_and_validation_of_workflow-based_experiments)
+
Sarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blancheto (2017):
**Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities**
_Future Generation Computer Systems_ (Available online 6 January 2017).
-[https://doi.org/10.1016/j.future.2017.01.012](https://doi.org/10.1016/j.future.2017.01.012) **MISSING Open Acccess preprint**
+[https://doi.org/10.1016/j.future.2017.01.012](https://doi.org/10.1016/j.future.2017.01.012)
+[[preprint]](https://hal.archives-ouvertes.fr/hal-01516082)
+[[pdf]](https://hal.archives-ouvertes.fr/hal-01516082/document)
+
+Vishal Dwivedi, James D. Herbsleb, David Garlan (2017):
+**What Ails End-User Composition: A Cross-Domain Qualitative Study**.
+_End-User Development. IS-EUD 2017_, _Lecture Notes in Computer Science_ **10303**.
+[https://doi.org/10.1007/978-3-319-58735-6_5](https://doi.org/10.1007/978-3-319-58735-6_5)
+[[pdf]](http://www.cs.cmu.edu/~vdwivedi/papers/eud2017.pdf)
+
### 2016
Modified: incubator/taverna/site/trunk/content/community/references.md
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/community/references.md?rev=1798236&r1=1798235&r2=1798236&view=diff
==============================================================================
--- incubator/taverna/site/trunk/content/community/references.md (original)
+++ incubator/taverna/site/trunk/content/community/references.md Fri Jun 9 15:03:25 2017
@@ -29,17 +29,16 @@ Markus List, Peter Ebert, Felipe Albrech
In: _PLoS Computational Biology_ **13**(1): e1005265.
[https://doi.org/10.1371/journal.pcbi.1005265](https://doi.org/10.1371/journal.pcbi.1005265)
-Tomasz Miksa, Andreas Rauber (2017):
-**Using ontologies for verification and validation of workflow-based experiments**.
-In: _Web Semantics: Science, Services and Agents on the World Wide Web_, available online 24 January 2017.
-[https://doi.org/10.1016/j.websem.2017.01.002](https://doi.org/10.1016/j.websem.2017.01.002)
-[[researchgate]](https://www.researchgate.net/publication/312869477_Using_ontologies_for_verification_and_validation_of_workflow-based_experiments)
-
Rafael Ferreira da Silva, Rosa Filgueira, Ilia Pietri, Ming Jiang, Rizos Sakellariou, Ewa Deelman (2017):
**A characterization of workflow management systems for extreme-scale applications**.
In: _Future Generation Computer Systems_, available online 16 February 2017.
[https://doi.org/10.1016/j.future.2017.02.026](https://doi.org/10.1016/j.future.2017.02.026)
-**No OA preprint available?**
+[[pdf]](http://www.cs.man.ac.uk/~rizos/papers/fgcs17.pdf)
+
+Md. Rezaul Karim, Audrey Michel, Achille Zappa, Pavel Baranov, Ratnesh Sahay,Dietrich Rebholz-Schuhmann (2017):
+**Improving data workflow systems with cloud services and use of open data for bioinformatics research**.
+In: _Briefings in Bioinformatics_ bbx039. [https://doi.org/10.1093/bib/bbx039](https://doi.org/10.1093/bib/bbx039)
+
## 2016
@@ -63,6 +62,11 @@ Bruno F. Bastos, Regina Maria M. Braga,
In: _Concurrency and Computation: Practice and Experience_ **29**(2) e3851.
[https://doi.org/10.1002/cpe.3851](https://doi.org/10.1002/cpe.3851)
+Jeremy Leipzig (2016):
+**A review of bioinformatic pipeline frameworks**.
+In: _Briefings in bioinformatics_ (2017) **18**(3): 530-536
+[https://doi.org/10.1093/bib/bbw020](https://doi.org/10.1093/bib/bbw020)
+
## 2015
@@ -103,11 +107,6 @@ Sonja Holl, Yassene Mohammed, Olav Zimme
In: *BMC Bioinformatics* **16**(1): 1–13.
[https://doi.org/10.1186/s12859-015-0714-x](https://doi.org/10.1186/s12859-015-0714-x)
-Jeremy Leipzig. (2015).
-**A review of bioinformatic pipeline frameworks**.
-In: _Briefings in bioinformatics_ (2016) 1–7 bbw020.
-[https://doi.org/10.1093/bib/bbw020](https://doi.org/10.1093/bib/bbw020)
-
Ji Liu, Esther Pacitti, Patrick Valduriez, Marta Mattoso. (2015).
**A Survey of Data-Intensive Scientific Workflow Management**
In: _Journal of Grid Computing_ **13**: 457–493.
@@ -126,7 +125,7 @@ Yassene Mohammed, Christoph H. Borchers.
_Journal of Proteomics_ **129**: 93–97.
[https://doi.org/10.1016/j.jprot.2015.07.025](https://doi.org/10.1016/j.jprot.2015.07.025)
[[researchgate]](https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins)
-_preprint not currently available_
+**No Open Access preprint available?**
Steve OâHagan, Douglas B. Kell. (2015).
**Software review: the KNIME workflow environment and its applications in genetic programming and machine learning**.