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Posted to jira@arrow.apache.org by "bers (Jira)" <ji...@apache.org> on 2021/04/22 14:40:00 UTC
[jira] [Comment Edited] (ARROW-12503) Cannot call
io___MemoryMappedFile__Open()
[ https://issues.apache.org/jira/browse/ARROW-12503?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17329162#comment-17329162 ]
bers edited comment on ARROW-12503 at 4/22/21, 2:39 PM:
--------------------------------------------------------
Consequently, I was able to fix this by, during compilation, copying lib64 to lib:
{code:java}
export FOLDER=/tmp/Rtmpqu8Sq9/file5eac6851d0fa # or whatever it is for you
# after 50%, but before before 70%
cp -r $FOLDER/jemalloc_ep-prefix/src/jemalloc_ep/dist/lib64 $FOLDER/jemalloc_ep-prefix/src/jemalloc_ep/dist/lib
{code}
Hope this helps someone.
was (Author: bers):
Consequently, I was able to fix this by, during compilation, copying lib64 to lib:
export FOLDER=/tmp/Rtmpqu8Sq9/file5eac6851d0fa # or whatever it is for you
# after 50%, but before before 70%
cp -r $FOLDER/jemalloc_ep-prefix/src/jemalloc_ep/dist/lib64 $FOLDER/jemalloc_ep-prefix/src/jemalloc_ep/dist/lib
Hope this helps someone.
> Cannot call io___MemoryMappedFile__Open()
> -----------------------------------------
>
> Key: ARROW-12503
> URL: https://issues.apache.org/jira/browse/ARROW-12503
> Project: Apache Arrow
> Issue Type: Bug
> Environment: R4.0.5
> openSUSE Leap 15.2
> Reporter: bers
> Priority: Major
>
> I have checked [https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies|https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies,] and that none of the known issues apply to me.
> So then it's telling me to issue `[arrow::install_arrow(verbose = TRUE)|https://arrow.apache.org/docs/r/reference/install_arrow.html]`, which I did. Here's the output:
>
> ----
>
> {code}
> > arrow::install_arrow(verbose = TRUE)
> Installing package into ‘/data2/bers/opt/R/4.0/library’
> (as ‘lib’ is unspecified)
> trying URL 'https://cran.r-project.org/src/contrib/arrow_3.0.0.tar.gz'
> Content type 'application/x-gzip' length 344814 bytes (336 KB)
> ==================================================
> downloaded 336 KB
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> ** using staged installation
> trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
> Error in download.file(from_url, to_file, quiet = quietly) :
> cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
> *** No C++ binaries found for opensuse-15
> trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
> Error in download.file(from_url, to_file, quiet = quietly) :
> cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
> trying URL 'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
> Content type 'application/x-gzip' length 8200790 bytes (7.8 MB)
> ==================================================
> downloaded 7.8 MB
> *
> **
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> *** Building with MAKEFLAGS= -j2
> **** arrow with SOURCE_DIR="/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp" BUILD_DIR="/tmp/RtmpOXZGhl/file1568178b21a6" DEST_DIR="libarrow/arrow-3.0.0" CMAKE="/data2/bers/opt/cmake/bin/cmake" CC="gcc" CXX="g++ -std=gnu++11" LDFLAGS="-L/usr/local/lib64" ARROW_S3=ON ARROW_MIMALLOC=ON
> ++ pwd
> + : /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
> + : /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> + : /tmp/RtmpOXZGhl/file1568178b21a6
> + : libarrow/arrow-3.0.0
> + : /data2/bers/opt/cmake/bin/cmake
> ++ cd /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> ++ pwd
> + SOURCE_DIR=/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> ++ mkdir -p libarrow/arrow-3.0.0
> ++ cd libarrow/arrow-3.0.0
> ++ pwd
> + DEST_DIR=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
> + '[' '' = '' ']'
> + which ninja
> + '[' FALSE = false ']'
> + ARROW_DEFAULT_PARAM=OFF
> + mkdir -p /tmp/RtmpOXZGhl/file1568178b21a6
> + pushd /tmp/RtmpOXZGhl/file1568178b21a6
> /tmp/RtmpOXZGhl/file1568178b21a6 /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
> + /data2/bers/opt/cmake/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=BUNDLED -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=OFF -DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G 'Unix Makefiles' /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> -- Building using CMake version: 3.19.5
> -- The C compiler identification is GNU 7.5.0
> -- The CXX compiler identification is GNU 7.5.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/gcc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/g++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Arrow version: 3.0.0 (full: '3.0.0')
> -- Arrow SO version: 300 (full: 300.0.0)
> -- clang-tidy not found
> -- clang-format not found
> -- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
> -- infer not found
> fatal: not a git repository (or any of the parent directories): .git
> -- Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter)
> Reason given by package:
> Interpreter: Cannot use the interpreter "/data2/bers/opt/pyenv/shims/python3.9"
> – Found cpplint executable at /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp/build-support/cpplint.py
> – System processor: x86_64
> – Performing Test CXX_SUPPORTS_SSE4_2
> – Performing Test CXX_SUPPORTS_SSE4_2 - Success
> – Performing Test CXX_SUPPORTS_AVX2
> – Performing Test CXX_SUPPORTS_AVX2 - Success
> – Performing Test CXX_SUPPORTS_AVX512
> – Performing Test CXX_SUPPORTS_AVX512 - Success
> – Arrow build warning level: PRODUCTION
> Using ld linker
> Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=\{release,debug,...})
> – Build Type: RELEASE
> – Using BUNDLED approach to find dependencies
> – ARROW_ABSL_BUILD_VERSION: 0f3bb466b868b523cf1dc9b2aaaed65c77b28862
> – ARROW_AWSSDK_BUILD_VERSION: 1.8.90
> – ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.5
> – ARROW_AWS_C_COMMON_BUILD_VERSION: v0.4.59
> – ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
> – ARROW_BOOST_BUILD_VERSION: 1.71.0
> – ARROW_BROTLI_BUILD_VERSION: v1.0.7
> – ARROW_BZIP2_BUILD_VERSION: 1.0.8
> – ARROW_CARES_BUILD_VERSION: 1.16.1
> – ARROW_GBENCHMARK_BUILD_VERSION: v1.5.2
> – ARROW_GFLAGS_BUILD_VERSION: v2.2.2
> – ARROW_GLOG_BUILD_VERSION: v0.4.0
> – ARROW_GRPC_BUILD_VERSION: v1.33.2
> – ARROW_GTEST_BUILD_VERSION: 1.10.0
> – ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
> – ARROW_LZ4_BUILD_VERSION: v1.9.2
> – ARROW_MIMALLOC_BUILD_VERSION: v1.6.4
> – ARROW_ORC_BUILD_VERSION: 1.6.2
> – ARROW_PROTOBUF_BUILD_VERSION: v3.13.0
> – ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
> – ARROW_RE2_BUILD_VERSION: 2019-08-01
> – ARROW_SNAPPY_BUILD_VERSION: 1.1.8
> – ARROW_THRIFT_BUILD_VERSION: 0.12.0
> – ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
> – ARROW_UTF8PROC_BUILD_VERSION: v2.5.0
> – ARROW_ZLIB_BUILD_VERSION: 1.2.11
> – ARROW_ZSTD_BUILD_VERSION: v1.4.5
> – Looking for pthread.h
> – Looking for pthread.h - found
> – Performing Test CMAKE_HAVE_LIBC_PTHREAD
> – Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
> – Check if compiler accepts -pthread
> – Check if compiler accepts -pthread - yes
> – Found Threads: TRUE
> – Looking for __SIZEOF_INT128__
> – Looking for __SIZEOF_INT128__ - found
> – Boost include dir: /tmp/RtmpOXZGhl/file1568178b21a6/boost_ep-prefix/src/boost_ep
> – Boost libraries: boost_system_static;boost_filesystem_static
> – Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.1.1d", minimum required is "1.0.2")
> – Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
> – Building with OpenSSL (Version: 1.1.1d) support
> Building Apache Thrift from source
> – Building (vendored) jemalloc from source
> – Building (vendored) mimalloc from source
> – Building RapidJSON from source
> – Building ZLIB from source
> – Building RE2 from source
> – Found hdfs.h at: /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp/thirdparty/hadoop/include/hdfs.h
> Building AWS C++ SDK from source
> – Found CURL: /usr/lib64/libcurl.so (found version "7.72.0")
> – Found AWS SDK headers: /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-install/include
> – Found AWS SDK libraries: aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
> – All bundled static libraries: thrift::thrift;jemalloc::jemalloc;mimalloc::mimalloc;ZLIB::ZLIB;re2::re2;aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
> – CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
> – CMAKE_CXX_FLAGS: -Wno-noexcept-type -Wno-subobject-linkage -fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
> – Looking for backtrace
> – Looking for backtrace - found
> – backtrace facility detected in default set of libraries
> – Found Backtrace: /usr/include
> – Creating bundled static library target arrow_bundled_dependencies at /tmp/RtmpOXZGhl/file1568178b21a6/release/libarrow_bundled_dependencies.a
> – ---------------------------------------------------------------------
> – Arrow version: 3.0.0
> –
> – Build configuration summary:
> – Generator: Unix Makefiles
> – Build type: RELEASE
> – Source directory: /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> – Install prefix: /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
> –
> – Compile and link options:
> –
> – ARROW_CXXFLAGS="" [default=""]
> – Compiler flags to append when compiling Arrow
> – ARROW_BUILD_STATIC=ON [default=ON]
> – Build static libraries
> – ARROW_BUILD_SHARED=OFF [default=ON]
> – Build shared libraries
> – ARROW_PACKAGE_KIND="" [default=""]
> – Arbitrary string that identifies the kind of package
> – (for informational purposes)
> – ARROW_GIT_ID="" [default=""]
> – The Arrow git commit id (if any)
> – ARROW_GIT_DESCRIPTION="" [default=""]
> – The Arrow git commit description (if any)
> – ARROW_NO_DEPRECATED_API=OFF [default=OFF]
> – Exclude deprecated APIs from build
> – ARROW_USE_CCACHE=ON [default=ON]
> – Use ccache when compiling (if available)
> – ARROW_USE_LD_GOLD=OFF [default=OFF]
> – Use ld.gold for linking on Linux (if available)
> – ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
> – Use precompiled headers when compiling
> – ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
> – Compile-time SIMD optimization level
> – ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
> – Max runtime SIMD optimization level
> – ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
> – Arm64 arch and extensions
> – ARROW_ALTIVEC=ON [default=ON]
> – Build with Altivec if compiler has support
> – ARROW_RPATH_ORIGIN=OFF [default=OFF]
> – Build Arrow libraries with RATH set to $ORIGIN
> – ARROW_INSTALL_NAME_RPATH=ON [default=ON]
> – Build Arrow libraries with install_name set to @rpath
> – ARROW_GGDB_DEBUG=ON [default=ON]
> – Pass -ggdb flag to debug builds
> –
> – Test and benchmark options:
> –
> – ARROW_BUILD_EXAMPLES=OFF [default=OFF]
> – Build the Arrow examples
> – ARROW_BUILD_TESTS=OFF [default=OFF]
> – Build the Arrow googletest unit tests
> – ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
> – Enable timing-sensitive tests
> – ARROW_BUILD_INTEGRATION=OFF [default=OFF]
> – Build the Arrow integration test executables
> – ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
> – Build the Arrow micro benchmarks
> – ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
> – Build the Arrow micro reference benchmarks
> – ARROW_TEST_LINKAGE=static [default=shared|static]
> – Linkage of Arrow libraries with unit tests executables.
> – ARROW_FUZZING=OFF [default=OFF]
> – Build Arrow Fuzzing executables
> – ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
> – Enable unit tests which use large memory
> –
> – Lint options:
> –
> – ARROW_ONLY_LINT=OFF [default=OFF]
> – Only define the lint and check-format targets
> – ARROW_VERBOSE_LINT=OFF [default=OFF]
> – If off, 'quiet' flags will be passed to linting tools
> – ARROW_GENERATE_COVERAGE=OFF [default=OFF]
> – Build with C++ code coverage enabled
> –
> – Checks options:
> –
> – ARROW_TEST_MEMCHECK=OFF [default=OFF]
> – Run the test suite using valgrind --tool=memcheck
> – ARROW_USE_ASAN=OFF [default=OFF]
> – Enable Address Sanitizer checks
> – ARROW_USE_TSAN=OFF [default=OFF]
> – Enable Thread Sanitizer checks
> – ARROW_USE_UBSAN=OFF [default=OFF]
> – Enable Undefined Behavior sanitizer checks
> –
> – Project component options:
> –
> – ARROW_BUILD_UTILITIES=OFF [default=OFF]
> – Build Arrow commandline utilities
> – ARROW_COMPUTE=ON [default=OFF]
> – Build the Arrow Compute Modules
> – ARROW_CSV=ON [default=OFF]
> – Build the Arrow CSV Parser Module
> – ARROW_CUDA=OFF [default=OFF]
> – Build the Arrow CUDA extensions (requires CUDA toolkit)
> – ARROW_DATASET=ON [default=OFF]
> – Build the Arrow Dataset Modules
> – ARROW_FILESYSTEM=ON [default=OFF]
> – Build the Arrow Filesystem Layer
> – ARROW_FLIGHT=OFF [default=OFF]
> – Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
> – ARROW_GANDIVA=OFF [default=OFF]
> – Build the Gandiva libraries
> – ARROW_HDFS=OFF [default=OFF]
> – Build the Arrow HDFS bridge
> – ARROW_HIVESERVER2=OFF [default=OFF]
> – Build the HiveServer2 client and Arrow adapter
> – ARROW_IPC=ON [default=ON]
> – Build the Arrow IPC extensions
> – ARROW_JEMALLOC=ON [default=ON]
> – Build the Arrow jemalloc-based allocator
> – ARROW_JNI=OFF [default=OFF]
> – Build the Arrow JNI lib
> – ARROW_JSON=ON [default=OFF]
> – Build Arrow with JSON support (requires RapidJSON)
> – ARROW_MIMALLOC=ON [default=OFF]
> – Build the Arrow mimalloc-based allocator
> – ARROW_PARQUET=ON [default=OFF]
> – Build the Parquet libraries
> – ARROW_ORC=OFF [default=OFF]
> – Build the Arrow ORC adapter
> – ARROW_PLASMA=OFF [default=OFF]
> – Build the plasma object store along with Arrow
> – ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
> – Build the plasma object store java client
> – ARROW_PYTHON=OFF [default=OFF]
> – Build the Arrow CPython extensions
> – ARROW_S3=ON [default=OFF]
> – Build Arrow with S3 support (requires the AWS SDK for C++)
> – ARROW_TENSORFLOW=OFF [default=OFF]
> – Build Arrow with TensorFlow support enabled
> – ARROW_TESTING=OFF [default=OFF]
> – Build the Arrow testing libraries
> –
> – Thirdparty toolchain options:
> –
> – ARROW_DEPENDENCY_SOURCE=BUNDLED [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
> – Method to use for acquiring arrow's build dependencies
> – ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
> – Show output from ExternalProjects rather than just logging to files
> – ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
> – Link to shared libraries
> – ARROW_BOOST_USE_SHARED=OFF [default=ON]
> – Rely on boost shared libraries where relevant
> – ARROW_BROTLI_USE_SHARED=ON [default=ON]
> – Rely on Brotli shared libraries where relevant
> – ARROW_BZ2_USE_SHARED=ON [default=ON]
> – Rely on Bz2 shared libraries where relevant
> – ARROW_GFLAGS_USE_SHARED=ON [default=ON]
> – Rely on GFlags shared libraries where relevant
> – ARROW_GRPC_USE_SHARED=ON [default=ON]
> – Rely on gRPC shared libraries where relevant
> – ARROW_LZ4_USE_SHARED=ON [default=ON]
> – Rely on lz4 shared libraries where relevant
> – ARROW_OPENSSL_USE_SHARED=ON [default=ON]
> – Rely on OpenSSL shared libraries where relevant
> – ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
> – Rely on Protocol Buffers shared libraries where relevant
> – ARROW_THRIFT_USE_SHARED=ON [default=ON]
> – Rely on thrift shared libraries where relevant
> – ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
> – Rely on utf8proc shared libraries where relevant
> – ARROW_SNAPPY_USE_SHARED=ON [default=ON]
> – Rely on snappy shared libraries where relevant
> – ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
> – Rely on utf8proc shared libraries where relevant
> – ARROW_ZSTD_USE_SHARED=ON [default=ON]
> – Rely on zstd shared libraries where relevant
> – ARROW_USE_GLOG=OFF [default=OFF]
> – Build libraries with glog support for pluggable logging
> – ARROW_WITH_BACKTRACE=ON [default=ON]
> – Build with backtrace support
> – ARROW_WITH_BROTLI=OFF [default=OFF]
> – Build with Brotli compression
> – ARROW_WITH_BZ2=OFF [default=OFF]
> – Build with BZ2 compression
> – ARROW_WITH_LZ4=OFF [default=OFF]
> – Build with lz4 compression
> – ARROW_WITH_SNAPPY=OFF [default=OFF]
> – Build with Snappy compression
> – ARROW_WITH_ZLIB=ON [default=OFF]
> – Build with zlib compression
> – ARROW_WITH_ZSTD=OFF [default=OFF]
> – Build with zstd compression
> – ARROW_WITH_UTF8PROC=OFF [default=ON]
> – Build with support for Unicode properties using the utf8proc library
> – (only used if ARROW_COMPUTE is ON)
> – ARROW_WITH_RE2=ON [default=ON]
> – Build with support for regular expressions using the re2 library
> – (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
> –
> – Parquet options:
> –
> – PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
> – Depend only on Thirdparty headers to build libparquet.
> – Always OFF if building binaries
> – PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
> – Build the Parquet executable CLI tools. Requires static libraries to be built.
> – PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
> – Build the Parquet examples. Requires static libraries to be built.
> – PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
> – Build support for encryption. Fail if OpenSSL is not found
> –
> – Gandiva options:
> –
> – ARROW_GANDIVA_JAVA=OFF [default=OFF]
> – Build the Gandiva JNI wrappers
> – ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
> – Include -static-libstdc++ -static-libgcc when linking with
> – Gandiva static libraries
> – ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
> – Compiler flags to append when pre-compiling Gandiva operations
> –
> – Advanced developer options:
> –
> – ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
> – Compile with extra error context (line numbers, code)
> – ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
> – If enabled install ONLY targets that have already been built. Please be
> – advised that if this is enabled 'install' will fail silently on components
> – that have not been built
> – Outputting build configuration summary to /tmp/RtmpOXZGhl/file1568178b21a6/cmake_summary.json
> – Configuring done
> – Generating done
> – Build files have been written to: /tmp/RtmpOXZGhl/file1568178b21a6
> + /data2/bers/opt/cmake/bin/cmake --build . --target install
> Scanning dependencies of target jemalloc_ep
> Scanning dependencies of target boost_ep
> [ 0%] Creating directories for 'jemalloc_ep'
> [ 1%] Creating directories for 'boost_ep'
> [ 2%] Performing download step (download, verify and extract) for 'jemalloc_ep'
> [ 3%] Performing download step (download, verify and extract) for 'boost_ep'
> – jemalloc_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
> [ 4%] No update step for 'jemalloc_ep'
> [ 5%] Performing patch step for 'jemalloc_ep'
> [ 6%] Performing configure step for 'jemalloc_ep'
> – boost_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
> [ 7%] No update step for 'boost_ep'
> [ 8%] No patch step for 'boost_ep'
> [ 8%] No configure step for 'boost_ep'
> [ 9%] No build step for 'boost_ep'
> [ 9%] No install step for 'boost_ep'
> [ 10%] Completed 'boost_ep'
> [ 10%] Built target boost_ep
> Scanning dependencies of target rapidjson_ep
> [ 11%] Creating directories for 'rapidjson_ep'
> [ 12%] Performing download step (download, verify and extract) for 'rapidjson_ep'
> – rapidjson_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
> [ 13%] No update step for 'rapidjson_ep'
> [ 13%] No patch step for 'rapidjson_ep'
> [ 14%] Performing configure step for 'rapidjson_ep'
> – rapidjson_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
> [ 15%] Performing build step for 'rapidjson_ep'
> – rapidjson_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
> [ 16%] Performing install step for 'rapidjson_ep'
> – rapidjson_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
> [ 16%] Completed 'rapidjson_ep'
> [ 16%] Built target rapidjson_ep
> Scanning dependencies of target aws_c_common_ep
> [ 16%] Creating directories for 'aws_c_common_ep'
> [ 17%] Performing download step (download, verify and extract) for 'aws_c_common_ep'
> – aws_c_common_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-download-*.log
> [ 18%] No update step for 'aws_c_common_ep'
> [ 19%] No patch step for 'aws_c_common_ep'
> [ 20%] Performing configure step for 'aws_c_common_ep'
> – aws_c_common_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-configure-*.log
> [ 20%] Performing build step for 'aws_c_common_ep'
> – jemalloc_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
> [ 20%] Performing build step for 'jemalloc_ep'
> – aws_c_common_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-build-*.log
> [ 21%] Performing install step for 'aws_c_common_ep'
> – aws_c_common_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-install-*.log
> [ 22%] Completed 'aws_c_common_ep'
> [ 22%] Built target aws_c_common_ep
> Scanning dependencies of target aws_checksums_ep
> [ 23%] Creating directories for 'aws_checksums_ep'
> [ 24%] Performing download step (download, verify and extract) for 'aws_checksums_ep'
> – aws_checksums_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-download-*.log
> [ 24%] No update step for 'aws_checksums_ep'
> [ 25%] No patch step for 'aws_checksums_ep'
> [ 26%] Performing configure step for 'aws_checksums_ep'
> – aws_checksums_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-configure-*.log
> [ 27%] Performing build step for 'aws_checksums_ep'
> – aws_checksums_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-*.log
> [ 28%] Performing install step for 'aws_checksums_ep'
> – aws_checksums_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-install-*.log
> [ 29%] Completed 'aws_checksums_ep'
> [ 29%] Built target aws_checksums_ep
> Scanning dependencies of target zlib_ep
> [ 30%] Creating directories for 'zlib_ep'
> [ 30%] Performing download step (download, verify and extract) for 'zlib_ep'
> – zlib_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-download-*.log
> [ 31%] No update step for 'zlib_ep'
> [ 32%] No patch step for 'zlib_ep'
> [ 33%] Performing configure step for 'zlib_ep'
> – zlib_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-configure-*.log
> [ 34%] Performing build step for 'zlib_ep'
> – zlib_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-build-*.log
> [ 35%] Performing install step for 'zlib_ep'
> – zlib_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-install-*.log
> [ 36%] Completed 'zlib_ep'
> [ 36%] Built target zlib_ep
> Scanning dependencies of target mimalloc_ep
> [ 37%] Creating directories for 'mimalloc_ep'
> [ 37%] Performing download step (download, verify and extract) for 'mimalloc_ep'
> – Downloading...
> dst='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
> timeout='none'
> inactivity timeout='none'
> – Using src='https://github.com/microsoft/mimalloc/archive/v1.6.4.tar.gz'
> – [download 100% complete]
> – [download 1% complete]
> – [download 6% complete]
> – [download 14% complete]
> – [download 30% complete]
> – [download 52% complete]
> – [download 64% complete]
> – [download 85% complete]
> – [download 100% complete]
> – Downloading... done
> – extracting...
> src='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
> dst='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/mimalloc_ep'
> – extracting... [tar xfz]
> – extracting... [analysis]
> – extracting... [rename]
> – extracting... [clean up]
> – extracting... done
> [ 38%] No update step for 'mimalloc_ep'
> [ 39%] No patch step for 'mimalloc_ep'
> [ 40%] Performing configure step for 'mimalloc_ep'
> – The C compiler identification is GNU 7.5.0
> – The CXX compiler identification is GNU 7.5.0
> – Detecting C compiler ABI info
> – Detecting C compiler ABI info - done
> – Check for working C compiler: /usr/bin/gcc - skipped
> – Detecting C compile features
> – Detecting C compile features - done
> – Detecting CXX compiler ABI info
> – Detecting CXX compiler ABI info - done
> – Check for working CXX compiler: /usr/bin/g++ - skipped
> – Detecting CXX compile features
> – Detecting CXX compile features - done
> –
> – Library base name: mimalloc
> – Build type : release
> – Install directory: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6
> – Build targets : static
> –
> – Configuring done
> – Generating done
> CMake Warning:
> Manually-specified variables were not used by the project:
> CMAKE_EXPORT_NO_PACKAGE_REGISTRY
> CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
> – Build files have been written to: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/mimalloc_ep-build
> [ 40%] Performing build step for 'mimalloc_ep'
> Scanning dependencies of target mimalloc-static
> [ 7%] Building C object CMakeFiles/mimalloc-static.dir/src/stats.c.o
> [ 14%] Building C object CMakeFiles/mimalloc-static.dir/src/random.c.o
> [ 21%] Building C object CMakeFiles/mimalloc-static.dir/src/os.c.o
> [ 28%] Building C object CMakeFiles/mimalloc-static.dir/src/arena.c.o
> [ 35%] Building C object CMakeFiles/mimalloc-static.dir/src/region.c.o
> [ 42%] Building C object CMakeFiles/mimalloc-static.dir/src/segment.c.o
> [ 50%] Building C object CMakeFiles/mimalloc-static.dir/src/page.c.o
> [ 57%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc.c.o
> [ 64%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-aligned.c.o
> [ 71%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-posix.c.o
> [ 78%] Building C object CMakeFiles/mimalloc-static.dir/src/heap.c.o
> [ 85%] Building C object CMakeFiles/mimalloc-static.dir/src/options.c.o
> [ 92%] Building C object CMakeFiles/mimalloc-static.dir/src/init.c.o
> [100%] Linking C static library libmimalloc.a
> [100%] Built target mimalloc-static
> [ 41%] Performing install step for 'mimalloc_ep'
> [100%] Built target mimalloc-static
> Install the project...
> – Install configuration: "RELEASE"
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/libmimalloc.a
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc.h
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc-override.h
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc-new-delete.h
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/cmake/mimalloc-config.cmake
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/cmake/mimalloc-config-version.cmake
> [ 42%] Completed 'mimalloc_ep'
> [ 42%] Built target mimalloc_ep
> Scanning dependencies of target re2_ep
> [ 43%] Creating directories for 're2_ep'
> [ 44%] Performing download step (download, verify and extract) for 're2_ep'
> – re2_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
> [ 45%] No update step for 're2_ep'
> [ 46%] No patch step for 're2_ep'
> [ 46%] Performing configure step for 're2_ep'
> – re2_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
> [ 47%] Performing build step for 're2_ep'
> – jemalloc_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
> [ 48%] Performing install step for 'jemalloc_ep'
> – jemalloc_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
> [ 49%] Completed 'jemalloc_ep'
> [ 49%] Built target jemalloc_ep
> Scanning dependencies of target arrow_dataset_objlib
> [ 50%] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_1_cxx.cxx.o
> [ 51%] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_0_cxx.cxx.o
> – re2_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
> [ 51%] Performing install step for 're2_ep'
> – re2_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
> [ 52%] Completed 're2_ep'
> [ 52%] Built target re2_ep
> Scanning dependencies of target thrift_ep
> [ 52%] Creating directories for 'thrift_ep'
> [ 53%] Performing download step (download, verify and extract) for 'thrift_ep'
> – thrift_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
> [ 54%] No update step for 'thrift_ep'
> [ 55%] No patch step for 'thrift_ep'
> [ 56%] Performing configure step for 'thrift_ep'
> [ 56%] Built target arrow_dataset_objlib
> Scanning dependencies of target aws_c_event_stream_ep
> [ 57%] Creating directories for 'aws_c_event_stream_ep'
> [ 57%] Performing download step (download, verify and extract) for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-download-*.log
> [ 58%] No update step for 'aws_c_event_stream_ep'
> [ 59%] No patch step for 'aws_c_event_stream_ep'
> [ 60%] Performing configure step for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-configure-*.log
> [ 60%] Performing build step for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-build-*.log
> [ 61%] Performing install step for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-install-*.log
> [ 62%] Completed 'aws_c_event_stream_ep'
> [ 62%] Built target aws_c_event_stream_ep
> Scanning dependencies of target awssdk_ep
> [ 63%] Creating directories for 'awssdk_ep'
> [ 64%] Performing download step (download, verify and extract) for 'awssdk_ep'
> – thrift_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
> [ 64%] Performing build step for 'thrift_ep'
> – awssdk_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-download-*.log
> [ 65%] No update step for 'awssdk_ep'
> [ 65%] No patch step for 'awssdk_ep'
> [ 66%] Performing configure step for 'awssdk_ep'
> – awssdk_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-configure-*.log
> [ 67%] Performing build step for 'awssdk_ep'
> – thrift_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
> [ 68%] Performing install step for 'thrift_ep'
> – thrift_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
> [ 69%] Completed 'thrift_ep'
> [ 69%] Built target thrift_ep
> – awssdk_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-*.log
> [ 70%] Performing install step for 'awssdk_ep'
> – awssdk_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-install-*.log
> [ 70%] Completed 'awssdk_ep'
> [ 70%] Built target awssdk_ep
> Scanning dependencies of target toolchain
> Scanning dependencies of target arrow_bundled_dependencies
> [ 70%] Built target toolchain
> [ 70%] Bundling /tmp/RtmpOXZGhl/file1568178b21a6/release/libarrow_bundled_dependencies.a
> Scanning dependencies of target arrow_dependencies
> /usr/bin/ar: /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc_pic.a: No such file or directory
> make[2]: *** [src/arrow/CMakeFiles/arrow_bundled_dependencies.dir/build.make:80: release/libarrow_bundled_dependencies.a] Error 9
> make[1]: *** [CMakeFiles/Makefile2:1388: src/arrow/CMakeFiles/arrow_bundled_dependencies.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> [ 70%] Built target arrow_dependencies
> gmake: *** [Makefile:160: all] Error 2
> + popd
> /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
> ------------------------- NOTE ---------------------------
> See [https://arrow.apache.org/docs/r/articles/install.html]
> for help installing Arrow C++ libraries
> ---------------------------------------------------------
> *
> ** libs
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c array.cpp -o array.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c array_from_vector.cpp -o array_from_vector.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c array_to_vector.cpp -o array_to_vector.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c arraydata.cpp -o arraydata.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c arrowExports.cpp -o arrowExports.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c buffer.cpp -o buffer.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c chunkedarray.cpp -o chunkedarray.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c compression.cpp -o compression.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c compute.cpp -o compute.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c csv.cpp -o csv.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c dataset.cpp -o dataset.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c datatype.cpp -o datatype.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c expression.cpp -o expression.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c feather.cpp -o feather.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c field.cpp -o field.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c filesystem.cpp -o filesystem.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c imports.cpp -o imports.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c io.cpp -o io.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c json.cpp -o json.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c memorypool.cpp -o memorypool.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c message.cpp -o message.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c parquet.cpp -o parquet.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c py-to-r.cpp -o py-to-r.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c recordbatch.cpp -o recordbatch.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c recordbatchreader.cpp -o recordbatchreader.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c scalar.cpp -o scalar.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c schema.cpp -o schema.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c symbols.cpp -o symbols.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c table.cpp -o table.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c threadpool.cpp -o threadpool.o
> g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
> installing to /data2/bers/opt/R/4.0/library/00LOCK-arrow/00new/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> {code}
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