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Posted to user@ctakes.apache.org by digital paula <cy...@hotmail.com> on 2013/11/14 22:15:22 UTC
RE: cTakes Document Preprocessor Component Error - SOLVED
I added the full path for the TypeSystem to the CdaCasInitializer descriptor (the only primitive AE in the AggregateAE) and it works now like a charm. Thanks James!
Also, thanks to Samir for responding....how's it going old friend? :-)
> From: Masanz.James@mayo.edu
> To: user@ctakes.apache.org
> Subject: RE: cTakes Document Preprocessor Component Error
> Date: Thu, 14 Nov 2013 20:37:47 +0000
>
> Try adding
>
> org.apache.ctakes.typesystem.types.TypeSystem
>
> as the type system.
>
> So the source looks like:
>
> <typeSystemDescription>
> <imports>
> <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
> </imports>
> </typeSystemDescription>
>
> Hope that helps
> -- James
>
>
> From: user-return-336-Masanz.James=mayo.edu@ctakes.apache.org [mailto:user-return-336-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of digital paula
> Sent: Thursday, November 14, 2013 1:42 PM
> To: user@ctakes.apache.org
> Subject: cTakes Document Preprocessor Component Error
>
> Hello cTakes Community,
>
> I'm back after hanging out with the UIMA guys :-) for a while, getting a better grasp of the UIMA framework that cTakes sits on. I'm exploring and understanding cTakes components and starting with the Document Preprocessor:
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor
>
> I loaded the testpatient_cn_1.xml file in the CVD cTakes launcher and loaded the AggregateAE descriptor. It loaded but when I ran it, I got the following error:
>
> Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.textspan.Segment" used in Java code, but was not declared in the XML type descriptor.
>
> I looked in the AggregatorAE descriptor file along with it's dependency CdaCasInitializer.xml and see both have nothing in the Type System tab however I do see a handful of types specified on the Capabilities tab including "org.apache.ctakes.typesystem.type.textspan.Segment"
>
> So I added Segment type to the Type System tab. I reran and got this error:
>
> 11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> Is there a file descriptor already setup maybe in another install with the necessary types/features to run the Document Preprocessor or will I manually have to add all of them? If not, I'd like to use UIMAfit to create the types/features to use with the Document Preprocessor as opposed to manually updating this descriptor with all the types and features needed. Can someone advise?
>
> Thanks.
>
> Regards,
> Paula
>
>
>
>
>
Re: cTakes Document Preprocessor Component Error - SOLVED
Posted by samir chabou <sa...@yahoo.com>.
going well thanks :)
On Thursday, November 14, 2013 4:15:56 PM, digital paula <cy...@hotmail.com> wrote:
I added the full path for the TypeSystem to the CdaCasInitializer descriptor (the only primitive AE in the AggregateAE) and it works now like a charm. Thanks James!
Also, thanks to Samir for responding....how's it going old friend? :-)
> From: Masanz.James@mayo.edu
> To: user@ctakes.apache.org
> Subject: RE: cTakes Document Preprocessor Component Error
> Date: Thu, 14 Nov 2013 20:37:47 +0000
>
> Try adding
>
> org.apache.ctakes.typesystem.types.TypeSystem
>
> as the type system.
>
> So the source looks like:
>
> <typeSystemDescription>
> <imports>
> <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
> </imports>
> </typeSystemDescription>
>
> Hope that helps
> -- James
>
>
> From: user-return-336-Masanz.James=mayo.edu@ctakes.apache.org [mailto:user-return-336-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of digital paula
> Sent: Thursday, November 14, 2013 1:42 PM
> To: user@ctakes.apache.org
> Subject: cTakes Document Preprocessor Component Error
>
> Hello cTakes Community,
>
> I'm back after hanging out with the UIMA guys :-) for a while, getting a better grasp of the UIMA framework that cTakes sits on. I'm exploring and understanding cTakes components and starting with the Document Preprocessor:
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor
>
> I loaded the testpatient_cn_1.xml file in the CVD cTakes launcher and loaded the AggregateAE descriptor. It loaded but when I ran it, I got the following error:
>
> Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.textspan.Segment" used in Java code, but was not declared in the XML type descriptor.
>
> I looked in the AggregatorAE descriptor file along with it's dependency CdaCasInitializer.xml and see both have nothing in the Type System tab however I do see a handful of types specified on the Capabilities tab including "org.apache.ctakes.typesystem.type.textspan.Segment"
>
> So I added Segment type to the Type System tab. I reran and got this error:
>
> 11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> Is there a file descriptor already setup maybe in another install with the necessary types/features to run the Document Preprocessor or will I manually have to add all of them? If not, I'd like to use UIMAfit to create the types/features to use with the Document Preprocessor as opposed to manually updating this descriptor with all the types and features needed. Can someone advise?
>
> Thanks.
>
> Regards,
> Paula
>
>
>
>
>