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Posted to issues@spark.apache.org by "Hyukjin Kwon (Jira)" <ji...@apache.org> on 2020/10/10 04:51:00 UTC
[jira] [Resolved] (SPARK-33105) Broken installation of source
packages on AppVeyor
[ https://issues.apache.org/jira/browse/SPARK-33105?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Hyukjin Kwon resolved SPARK-33105.
----------------------------------
Fix Version/s: 3.1.0
Resolution: Fixed
Fixed in https://github.com/apache/spark/pull/29991
> Broken installation of source packages on AppVeyor
> --------------------------------------------------
>
> Key: SPARK-33105
> URL: https://issues.apache.org/jira/browse/SPARK-33105
> Project: Spark
> Issue Type: Bug
> Components: Project Infra, R
> Affects Versions: 3.1.0
> Environment: *strong text*
> Reporter: Maciej Szymkiewicz
> Priority: Major
> Fix For: 3.1.0
>
>
> It looks like AppVeyor configuration is broken, which leads to failure of installation of source packages (become a problem when {{rlang}} has been updated from 0.4.7 and 0.4.8, with latter available only as a source package).
> {code}
> [00:01:48] trying URL
> 'https://cloud.r-project.org/src/contrib/rlang_0.4.8.tar.gz'
> [00:01:48] Content type 'application/x-gzip' length 847517 bytes (827 KB)
> [00:01:48] ==================================================
> [00:01:48] downloaded 827 KB
> [00:01:48]
> [00:01:48] Warning in strptime(xx, f, tz = tz) :
> [00:01:48] unable to identify current timezone 'C':
> [00:01:48] please set environment variable 'TZ'
> [00:01:49] * installing *source* package 'rlang' ...
> [00:01:49] ** package 'rlang' successfully unpacked and MD5 sums checked
> [00:01:49] ** using staged installation
> [00:01:49] ** libs
> [00:01:49]
> [00:01:49] *** arch - i386
> [00:01:49] C:/Rtools40/mingw64/bin/gcc -I"C:/R/include" -DNDEBUG
> -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2
> -mstackrealign -c capture.c -o capture.o
> [00:01:49] C:/Rtools40/mingw64/bin/gcc -I"C:/R/include" -DNDEBUG
> -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2
> -mstackrealign -c export.c -o export.o
> [00:01:49] C:/Rtools40/mingw64/bin/gcc -I"C:/R/include" -DNDEBUG
> -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2
> -mstackrealign -c internal.c -o internal.o
> [00:01:50] In file included from ./lib/rlang.h:74,
> [00:01:50] from internal/arg.c:1,
> [00:01:50] from internal.c:1:
> [00:01:50] internal/eval-tidy.c: In function 'rlang_tilde_eval':
> [00:01:50] ./lib/env.h:33:10: warning: 'top' may be used uninitialized
> in this function [-Wmaybe-uninitialized]
> [00:01:50] return ENCLOS(env);
> [00:01:50] ^~~~~~~~~~~
> [00:01:50] In file included from internal.c:8:
> [00:01:50] internal/eval-tidy.c:406:9: note: 'top' was declared here
> [00:01:50] sexp* top;
> [00:01:50] ^~~
> [00:01:50] C:/Rtools40/mingw64/bin/gcc -I"C:/R/include" -DNDEBUG
> -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2
> -mstackrealign -c lib.c -o lib.o
> [00:01:51] C:/Rtools40/mingw64/bin/gcc -I"C:/R/include" -DNDEBUG
> -I./lib/ -O2 -Wall -std=gnu99 -mfpmath=sse -msse2
> -mstackrealign -c version.c -o version.o
> [00:01:52] C:/Rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o
> rlang.dll tmp.def capture.o export.o internal.o lib.o version.o
> -LC:/R/bin/i386 -lR
> [00:01:52]
> c:/Rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe:
> skipping incompatible C:/R/bin/i386/R.dll when searching for -lR
> [00:01:52]
> c:/Rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe:
> skipping incompatible C:/R/bin/i386/R.dll when searching for -lR
> [00:01:52]
> c:/Rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe:
> cannot find -lR
> [00:01:52] collect2.exe: error: ld returned 1 exit status
> [00:01:52] no DLL was created
> [00:01:52] ERROR: compilation failed for package 'rlang'
> [00:01:52] * removing 'C:/RLibrary/rlang'
> [00:01:52]
> [00:01:52] The downloaded source packages are in
> [00:01:52]
> 'C:\Users\appveyor\AppData\Local\Temp\1\Rtmp8qrryA\downloaded_packages'
> [00:01:52] Warning message:
> [00:01:52] In install.packages(c("knitr", "rmarkdown", "testthat",
> "e1071", :
> [00:01:52] installation of package 'rlang' had non-zero exit status
> {code}
> This leads to failures to install {{devtools}} and generate Rd files and, as a result, CRAN check failure.
> There are some discrepancies in the {{dev/appveyor-install-dependencies.ps1}}, but the direct source of this issue seems to be {{$env:BINPREF}}, which forces usage of 64 bit mingw, even if packages are compiled for 32 bit.
> Modifying the variable to include current architecture:
> {code}
> $env:BINPREF=$RtoolsDrive + '/Rtools40/mingw$(WIN)/bin/'
> {code}
> (as proposed [here|https://stackoverflow.com/a/44035904] by R Yoda) looks like a valid fix, though we might want to clean remaining issues as well.
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