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Posted to commits@ctakes.apache.org by ja...@apache.org on 2017/04/20 18:40:10 UTC
svn commit: r1792107 - in
/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine:
AggregateCdaProcessor.xml AggregateCdaUMLSProcessor.xml
Author: james-masanz
Date: Thu Apr 20 18:40:10 2017
New Revision: 1792107
URL: http://svn.apache.org/viewvc?rev=1792107&view=rev
Log:
CTAKES-435 - update the assertion annotators that are being used by the Aggregate AEs that can process CDA documents. (found in 4.0.0 rc3)
Modified:
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaProcessor.xml
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaUMLSProcessor.xml
Modified: ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaProcessor.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaProcessor.xml?rev=1792107&r1=1792106&r2=1792107&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaProcessor.xml (original)
+++ ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaProcessor.xml Thu Apr 20 18:40:10 2017
@@ -70,9 +70,22 @@
<delegateAnalysisEngine key="DictionaryLookupAnnotator">
<import location="../../../ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotator.xml"/>
</delegateAnalysisEngine>
-<delegateAnalysisEngine key="AssertionAnnotator">
-<import location="../../../ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml"/>
-</delegateAnalysisEngine>
+ <delegateAnalysisEngine key="GenericCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+
+ <delegateAnalysisEngine key="HistoryCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+ <delegateAnalysisEngine key="PolarityCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+ <delegateAnalysisEngine key="SubjectCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+ <delegateAnalysisEngine key="UncertaintyCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
<delegateAnalysisEngine key="DependencyParser">
<import location="../../../ctakes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml"/>
</delegateAnalysisEngine>
@@ -116,11 +129,14 @@
<node>LookupWindowAnnotator</node>
<node>DictionaryLookupAnnotator</node>
<node>DependencyParser</node>
-<node>AssertionAnnotator</node>
-<!--
- <node>StatusAnnotator</node>
- <node>NegationAnnotator</node>
- -->
+ <!-- <node>AssertionAnnotator</node> -->
+ <!-- <node>StatusAnnotator</node> -->
+ <!-- <node>NegationAnnotator</node> -->
+ <node>GenericCleartkAnalysisEngine</node>
+ <node>HistoryCleartkAnalysisEngine</node>
+ <node>PolarityCleartkAnalysisEngine</node>
+ <node>SubjectCleartkAnalysisEngine</node>
+ <node>UncertaintyCleartkAnalysisEngine</node>
<node>ExtractionPrepAnnotator</node>
</fixedFlow>
</flowConstraints>
@@ -215,7 +231,23 @@
<aggregateSofaName>plaintext</aggregateSofaName>
</sofaMapping>
<sofaMapping>
-<componentKey>AssertionAnnotator</componentKey>
+<componentKey>GenericCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>HistoryCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>PolarityCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>SubjectCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>UncertaintyCleartkAnalysisEngine</componentKey>
<aggregateSofaName>plaintext</aggregateSofaName>
</sofaMapping>
<sofaMapping>
Modified: ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaUMLSProcessor.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaUMLSProcessor.xml?rev=1792107&r1=1792106&r2=1792107&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaUMLSProcessor.xml (original)
+++ ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaUMLSProcessor.xml Thu Apr 20 18:40:10 2017
@@ -70,9 +70,22 @@
<delegateAnalysisEngine key="DictionaryLookupAnnotatorDB">
<import location="../../../ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml"/>
</delegateAnalysisEngine>
-<delegateAnalysisEngine key="AssertionAnnotator">
-<import location="../../../ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml"/>
-</delegateAnalysisEngine>
+ <delegateAnalysisEngine key="GenericCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+
+ <delegateAnalysisEngine key="HistoryCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+ <delegateAnalysisEngine key="PolarityCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+ <delegateAnalysisEngine key="SubjectCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
+ <delegateAnalysisEngine key="UncertaintyCleartkAnalysisEngine">
+ <import location="../../../ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml"/>
+ </delegateAnalysisEngine>
<delegateAnalysisEngine key="DependencyParser">
<import location="../../../ctakes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml"/>
</delegateAnalysisEngine>
@@ -119,11 +132,14 @@ Please update DictionaryLookupAnnotatorU
<node>LookupWindowAnnotator</node>
<node>DictionaryLookupAnnotatorDB</node>
<node>DependencyParser</node>
-<node>AssertionAnnotator</node>
-<!--
- <node>StatusAnnotator</node>
- <node>NegationAnnotator</node>
- -->
+ <!-- <node>AssertionAnnotator</node> -->
+ <!-- <node>StatusAnnotator</node> -->
+ <!-- <node>NegationAnnotator</node> -->
+ <node>GenericCleartkAnalysisEngine</node>
+ <node>HistoryCleartkAnalysisEngine</node>
+ <node>PolarityCleartkAnalysisEngine</node>
+ <node>SubjectCleartkAnalysisEngine</node>
+ <node>UncertaintyCleartkAnalysisEngine</node>
<node>ExtractionPrepAnnotator</node>
</fixedFlow>
</flowConstraints>
@@ -218,11 +234,27 @@ Please update DictionaryLookupAnnotatorU
<aggregateSofaName>plaintext</aggregateSofaName>
</sofaMapping>
<sofaMapping>
-<componentKey>DependencyParser</componentKey>
+<componentKey>GenericCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>HistoryCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>PolarityCleartkAnalysisEngine</componentKey>
<aggregateSofaName>plaintext</aggregateSofaName>
</sofaMapping>
<sofaMapping>
-<componentKey>AssertionAnnotator</componentKey>
+<componentKey>SubjectCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>UncertaintyCleartkAnalysisEngine</componentKey>
+<aggregateSofaName>plaintext</aggregateSofaName>
+</sofaMapping>
+<sofaMapping>
+<componentKey>DependencyParser</componentKey>
<aggregateSofaName>plaintext</aggregateSofaName>
</sofaMapping>
</sofaMappings>