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Posted to commits@taverna.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/09/07 12:40:47 UTC

Build failed in Jenkins: incubator-taverna-plugin-bioinformatics #234

See <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/234/changes>

Changes:

[stain] Avoid duplicate ASF header

[stain] Remove (c) Edward Kawas, The BioMoby Project

[stain] Remove (c) Edward Kawas, The BioMoby Project

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[...truncated 246 lines...]
[INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/configuration/taverna-database-configuration-api/0.1.1-SNAPSHOT/maven-metadata.xml (2 KB at 1.0 KB/sec)
[INFO] Downloading: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/commons/taverna-commons/1.0.0-SNAPSHOT/maven-metadata.xml
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[INFO] Downloading: http://repository.springsource.com/maven/bundles/release/net/sf/taverna/t2/core/reference-core-extensions/2.0.1-SNAPSHOT/maven-metadata.xml
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[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ biomart-activity ---
[INFO] Deleting <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target>
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ biomart-activity ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ biomart-activity ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ biomart-activity ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ biomart-activity ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/test-classes>
[INFO] 
[INFO] --- maven-surefire-plugin:2.7.1:test (default-test) @ biomart-activity ---
[INFO] Surefire report directory: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running net.sf.taverna.t2.activities.biomart.BiomartActivityFactoryTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.106 sec

Results :

Tests run: 2, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-bundle-plugin:2.3.7:bundle (default-bundle) @ biomart-activity ---
[INFO] 
[INFO] >>> maven-source-plugin:2.1.2:jar (default) > generate-sources @ biomart-activity >>>
[WARNING] Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo
[INFO] 
[INFO] <<< maven-source-plugin:2.1.2:jar (default) < generate-sources @ biomart-activity <<<
[INFO] 
[INFO] --- maven-source-plugin:2.1.2:jar (default) @ biomart-activity ---
[INFO] Building jar: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-sources.jar>
[INFO] 
[INFO] >>> maven-source-plugin:2.1.2:test-jar (default) > generate-sources @ biomart-activity >>>
[WARNING] Failed to getClass for org.apache.maven.plugin.source.TestSourceJarMojo
[INFO] 
[INFO] <<< maven-source-plugin:2.1.2:test-jar (default) < generate-sources @ biomart-activity <<<
[INFO] 
[INFO] --- maven-source-plugin:2.1.2:test-jar (default) @ biomart-activity ---
[INFO] Building jar: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar>
[INFO] 
[INFO] --- maven-jar-plugin:2.3.1:test-jar (default) @ biomart-activity ---
[INFO] Building jar: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-tests.jar>
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ biomart-activity ---
[INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.jar>
[INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/pom.xml> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.pom>
[INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-sources.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-sources.jar>
[INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar>
[INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-tests.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-tests.jar>
[INFO] 
[INFO] --- maven-bundle-plugin:2.3.7:install (default-install) @ biomart-activity ---
[INFO] Installing net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.jar
[INFO] Writing OBR metadata
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Taverna 2 Biomart Activity UI 2.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[WARNING] Failure to transfer org.apache.maven.plugins:maven-install-plugin/maven-metadata.xml from http://snapshots.maven.codehaus.org/maven2/ was cached in the local repository, resolution will not be reattempted until the update interval of Maven Snapshots has elapsed or updates are forced. Original error: Could not transfer metadata org.apache.maven.plugins:maven-install-plugin/maven-metadata.xml from/to Maven Snapshots (http://snapshots.maven.codehaus.org/maven2/): Connect to snapshots.maven.codehaus.org:80 [snapshots.maven.codehaus.org/52.5.67.234] failed: Connection timed out
[WARNING] Failure to transfer org.apache.maven.plugins:maven-resources-plugin/maven-metadata.xml from http://snapshots.maven.codehaus.org/maven2/ was cached in the local repository, resolution will not be reattempted until the update interval of Maven Snapshots has elapsed or updates are forced. Original error: Could not transfer metadata org.apache.maven.plugins:maven-resources-plugin/maven-metadata.xml from/to Maven Snapshots (http://snapshots.maven.codehaus.org/maven2/): Connect to snapshots.maven.codehaus.org:80 [snapshots.maven.codehaus.org/52.5.67.234] failed: Connection timed out
[WARNING] Failure to transfer org.apache.maven.plugins:maven-deploy-plugin/maven-metadata.xml from http://snapshots.maven.codehaus.org/maven2/ was cached in the local repository, resolution will not be reattempted until the update interval of Maven Snapshots has elapsed or updates are forced. Original error: Could not transfer metadata org.apache.maven.plugins:maven-deploy-plugin/maven-metadata.xml from/to Maven Snapshots (http://snapshots.maven.codehaus.org/maven2/): Connect to snapshots.maven.codehaus.org:80 [snapshots.maven.codehaus.org/52.5.67.234] failed: Connection timed out
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[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ biomart-activity-ui ---
[INFO] Deleting <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/target>
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ biomart-activity-ui ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ biomart-activity-ui ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 9 source files to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/src/main/java/net/sf/taverna/t2/activities/biomart/servicedescriptions/BiomartServiceDescription.java>:[1,2] class, interface, or enum expected
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] MartService ........................................ SUCCESS [06:36 min]
[INFO] Taverna 2 Biomart Activity. ........................ SUCCESS [ 20.731 s]
[INFO] Taverna 2 Biomart Activity UI ...................... FAILURE [ 28.003 s]
[INFO] Taverna 2 Biomoby Activity ......................... SKIPPED
[INFO] Taverna 2 Biomoby Activity UI ...................... SKIPPED
[INFO] Taverna 2 NCBI web service Activity UI ............. SKIPPED
[INFO] Taverna 2 Soaplab Activity ......................... SKIPPED
[INFO] Taverna 2 Soaplab Activity UI ...................... SKIPPED
[INFO] Apache Taverna Plugin for Bioinformatics ........... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 07:32 min
[INFO] Finished at: 2016-09-07T12:40:07+00:00
[INFO] Final Memory: 42M/444M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project biomart-activity-ui: Compilation failure
[ERROR] <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/src/main/java/net/sf/taverna/t2/activities/biomart/servicedescriptions/BiomartServiceDescription.java>:[1,2] class, interface, or enum expected
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :biomart-activity-ui
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/pom.xml> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT.pom
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT-sources.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT-sources.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT-test-sources.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT-test-sources.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT-tests.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT-tests.jar
Compressed 689.85 KB of artifacts by 46.4% relative to #233
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-ncbi-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/ncbi-activity-ui/3.0.1-SNAPSHOT/ncbi-activity-ui-3.0.1-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/biomart-activity-ui/2.0-SNAPSHOT/biomart-activity-ui-2.0-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/pom.xml> to org.apache.taverna.bioinformatics/apache-taverna-plugin-bioinformatics/3.1.0-incubating-SNAPSHOT/apache-taverna-plugin-bioinformatics-3.1.0-incubating-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomoby-activity/pom.xml> to net.sf.taverna.t2.activities/biomoby-activity/2.0.1-SNAPSHOT/biomoby-activity-2.0.1-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-soaplab-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/soaplab-activity-ui/2.0-SNAPSHOT/soaplab-activity-ui-2.0-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomoby-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/biomoby-activity-ui/2.0.1-SNAPSHOT/biomoby-activity-ui-2.0.1-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/pom.xml> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.pom
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-sources.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-sources.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-tests.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-tests.jar
[JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-soaplab-activity/pom.xml> to net.sf.taverna.t2.activities/soaplab-activity/3.0.1-SNAPSHOT/soaplab-activity-3.0.1-SNAPSHOT.pom
No prior successful build to compare, so performing full copy of artifacts
channel stopped
No JDK named ?jdk-1.8.0? found