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Posted to dev@airavata.apache.org by Aishwarya Sinhasane <ai...@gmail.com> on 2022/07/01 16:01:51 UTC
Regarding seagrid desktop client molecule viewer inetgration
Hello Sudhakar
I was working on integrating a molecule viewer in seagrid desktop client. I
used the NGL Viewer. I tried various other molecule viewers developed in
javascript but some of them are not working properly so I choose NGLViewer.
This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF structures.
I am trying to implement a JSMol molecule viewer. Please refer to the
attached screenshots.
Re: Regarding seagrid desktop client molecule viewer inetgration
Posted by Aishwarya Sinhasane <ai...@gmail.com>.
Hello Sudhakar
I will try to implement editors and will update you.
Thanks and Regards
Aishwarya Sinhasane
On Fri, Jul 1, 2022, 12:59 PM Pamidighantam, Sudhakar <pa...@iu.edu>
wrote:
> Aishwarya:
>
>
>
> Looks good. Keep this and then look at JS molecular Editors or third party
> editors such as Avagadro, or Ovito. Let us plan to meet next week to look
> at these and discuss further.
>
>
>
> Thanks,
>
> Sudhakar.
>
>
>
> *From: *Aishwarya Sinhasane <ai...@gmail.com>
> *Reply-To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
> *Date: *Friday, July 1, 2022 at 12:02 PM
> *To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
> *Subject: *Regarding seagrid desktop client molecule viewer inetgration
>
>
>
> Hello Sudhakar
>
>
>
> I was working on integrating a molecule viewer in seagrid desktop client.
> I used the NGL Viewer. I tried various other molecule viewers developed in
> javascript but some of them are not working properly so I choose NGLViewer.
> This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF structures.
>
>
>
> I am trying to implement a JSMol molecule viewer. Please refer to the
> attached screenshots.
>
Re: Regarding seagrid desktop client molecule viewer inetgration
Posted by Aishwarya Sinhasane <ai...@gmail.com>.
Hello Suresh
I will share it as soon as possible. Also I will take care from next week.
I apologize for the same.
Thanks and Regards
Aishwarya Sinhasane
On Fri, Jul 1, 2022, 2:25 PM Suresh Marru <sm...@apache.org> wrote:
> Hi Aishwarya,
>
> I echo it as well. Please do not wait for the code to be perfect, try to
> make it a habit to commit early and often to a PR. A big commit will delay
> reviews or demotivate reviews (due to lack of time), smaller and focused
> chucks make it faster.
>
> Suresh
>
> On Jul 1, 2022, at 1:56 PM, Aishwarya Sinhasane <
> aishwaryasinhasane@gmail.com> wrote:
>
> Hii Dimuthu
>
> I will share document and code next week need some changes to do.
>
> Thanks and regards
> Aishwarya Sinhasane
>
> On Fri, Jul 1, 2022, 1:27 PM DImuthu Upeksha <di...@gmail.com>
> wrote:
>
>> Hi Aishwarya,
>>
>> This is a very solid improvement. Is there a way we can try these out? Do
>> you have a working fork?
>>
>> Thanks
>> Dimuthu
>>
>> On Fri, Jul 1, 2022 at 12:59 PM Pamidighantam, Sudhakar <pa...@iu.edu>
>> wrote:
>>
>>> Aishwarya:
>>>
>>>
>>>
>>> Looks good. Keep this and then look at JS molecular Editors or third
>>> party editors such as Avagadro, or Ovito. Let us plan to meet next week to
>>> look at these and discuss further.
>>>
>>>
>>>
>>> Thanks,
>>>
>>> Sudhakar.
>>>
>>>
>>>
>>> *From: *Aishwarya Sinhasane <ai...@gmail.com>
>>> *Reply-To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
>>> *Date: *Friday, July 1, 2022 at 12:02 PM
>>> *To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
>>> *Subject: *Regarding seagrid desktop client molecule viewer inetgration
>>>
>>>
>>>
>>> Hello Sudhakar
>>>
>>>
>>>
>>> I was working on integrating a molecule viewer in seagrid desktop
>>> client. I used the NGL Viewer. I tried various other molecule viewers
>>> developed in javascript but some of them are not working properly so I
>>> choose NGLViewer. This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF
>>> structures.
>>>
>>>
>>>
>>> I am trying to implement a JSMol molecule viewer. Please refer to the
>>> attached screenshots.
>>>
>>
>
Re: Regarding seagrid desktop client molecule viewer inetgration
Posted by Suresh Marru <sm...@apache.org>.
Hi Aishwarya,
I echo it as well. Please do not wait for the code to be perfect, try to make it a habit to commit early and often to a PR. A big commit will delay reviews or demotivate reviews (due to lack of time), smaller and focused chucks make it faster.
Suresh
> On Jul 1, 2022, at 1:56 PM, Aishwarya Sinhasane <ai...@gmail.com> wrote:
>
> Hii Dimuthu
>
> I will share document and code next week need some changes to do.
>
> Thanks and regards
> Aishwarya Sinhasane
>
> On Fri, Jul 1, 2022, 1:27 PM DImuthu Upeksha <dimuthu.upeksha2@gmail.com <ma...@gmail.com>> wrote:
> Hi Aishwarya,
>
> This is a very solid improvement. Is there a way we can try these out? Do you have a working fork?
>
> Thanks
> Dimuthu
>
> On Fri, Jul 1, 2022 at 12:59 PM Pamidighantam, Sudhakar <pamidigs@iu.edu <ma...@iu.edu>> wrote:
> Aishwarya:
>
>
>
> Looks good. Keep this and then look at JS molecular Editors or third party editors such as Avagadro, or Ovito. Let us plan to meet next week to look at these and discuss further.
>
>
>
> Thanks,
>
> Sudhakar.
>
>
>
> From: Aishwarya Sinhasane <aishwaryasinhasane@gmail.com <ma...@gmail.com>>
> Reply-To: "dev@airavata.apache.org <ma...@airavata.apache.org>" <dev@airavata.apache.org <ma...@airavata.apache.org>>
> Date: Friday, July 1, 2022 at 12:02 PM
> To: "dev@airavata.apache.org <ma...@airavata.apache.org>" <dev@airavata.apache.org <ma...@airavata.apache.org>>
> Subject: Regarding seagrid desktop client molecule viewer inetgration
>
>
>
> Hello Sudhakar
>
>
>
> I was working on integrating a molecule viewer in seagrid desktop client. I used the NGL Viewer. I tried various other molecule viewers developed in javascript but some of them are not working properly so I choose NGLViewer. This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF structures.
>
>
>
> I am trying to implement a JSMol molecule viewer. Please refer to the attached screenshots.
>
Re: Regarding seagrid desktop client molecule viewer inetgration
Posted by Aishwarya Sinhasane <ai...@gmail.com>.
Hii Dimuthu
I will share document and code next week need some changes to do.
Thanks and regards
Aishwarya Sinhasane
On Fri, Jul 1, 2022, 1:27 PM DImuthu Upeksha <di...@gmail.com>
wrote:
> Hi Aishwarya,
>
> This is a very solid improvement. Is there a way we can try these out? Do
> you have a working fork?
>
> Thanks
> Dimuthu
>
> On Fri, Jul 1, 2022 at 12:59 PM Pamidighantam, Sudhakar <pa...@iu.edu>
> wrote:
>
>> Aishwarya:
>>
>>
>>
>> Looks good. Keep this and then look at JS molecular Editors or third
>> party editors such as Avagadro, or Ovito. Let us plan to meet next week to
>> look at these and discuss further.
>>
>>
>>
>> Thanks,
>>
>> Sudhakar.
>>
>>
>>
>> *From: *Aishwarya Sinhasane <ai...@gmail.com>
>> *Reply-To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
>> *Date: *Friday, July 1, 2022 at 12:02 PM
>> *To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
>> *Subject: *Regarding seagrid desktop client molecule viewer inetgration
>>
>>
>>
>> Hello Sudhakar
>>
>>
>>
>> I was working on integrating a molecule viewer in seagrid desktop client.
>> I used the NGL Viewer. I tried various other molecule viewers developed in
>> javascript but some of them are not working properly so I choose NGLViewer.
>> This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF structures.
>>
>>
>>
>> I am trying to implement a JSMol molecule viewer. Please refer to the
>> attached screenshots.
>>
>
Re: Regarding seagrid desktop client molecule viewer inetgration
Posted by DImuthu Upeksha <di...@gmail.com>.
Hi Aishwarya,
This is a very solid improvement. Is there a way we can try these out? Do
you have a working fork?
Thanks
Dimuthu
On Fri, Jul 1, 2022 at 12:59 PM Pamidighantam, Sudhakar <pa...@iu.edu>
wrote:
> Aishwarya:
>
>
>
> Looks good. Keep this and then look at JS molecular Editors or third party
> editors such as Avagadro, or Ovito. Let us plan to meet next week to look
> at these and discuss further.
>
>
>
> Thanks,
>
> Sudhakar.
>
>
>
> *From: *Aishwarya Sinhasane <ai...@gmail.com>
> *Reply-To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
> *Date: *Friday, July 1, 2022 at 12:02 PM
> *To: *"dev@airavata.apache.org" <de...@airavata.apache.org>
> *Subject: *Regarding seagrid desktop client molecule viewer inetgration
>
>
>
> Hello Sudhakar
>
>
>
> I was working on integrating a molecule viewer in seagrid desktop client.
> I used the NGL Viewer. I tried various other molecule viewers developed in
> javascript but some of them are not working properly so I choose NGLViewer.
> This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF structures.
>
>
>
> I am trying to implement a JSMol molecule viewer. Please refer to the
> attached screenshots.
>
Re: Regarding seagrid desktop client molecule viewer inetgration
Posted by "Pamidighantam, Sudhakar" <pa...@iu.edu>.
Aishwarya:
Looks good. Keep this and then look at JS molecular Editors or third party editors such as Avagadro, or Ovito. Let us plan to meet next week to look at these and discuss further.
Thanks,
Sudhakar.
From: Aishwarya Sinhasane <ai...@gmail.com>
Reply-To: "dev@airavata.apache.org" <de...@airavata.apache.org>
Date: Friday, July 1, 2022 at 12:02 PM
To: "dev@airavata.apache.org" <de...@airavata.apache.org>
Subject: Regarding seagrid desktop client molecule viewer inetgration
Hello Sudhakar
I was working on integrating a molecule viewer in seagrid desktop client. I used the NGL Viewer. I tried various other molecule viewers developed in javascript but some of them are not working properly so I choose NGLViewer. This molecule viewer supports mmCIF, PDB, mol2, SDF, MMTF structures.
I am trying to implement a JSMol molecule viewer. Please refer to the attached screenshots.