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[GitHub] [spark] dongjoon-hyun opened a new pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
dongjoon-hyun opened a new pull request #34138:
URL: https://github.com/apache/spark/pull/34138
### What changes were proposed in this pull request?
This PR aims to upgrade GitHub Action CI image to recover CRAN installation failure.
### Why are the changes needed?
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Please clarify why the changes are needed. For instance,
1. If you propose a new API, clarify the use case for a new API.
2. If you fix a bug, you can clarify why it is a bug.
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### Does this PR introduce _any_ user-facing change?
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Note that it means *any* user-facing change including all aspects such as the documentation fix.
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### How was this patch tested?
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[GitHub] [spark] SparkQA commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-930498059
**[Test build #143723 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/143723/testReport)** for PR 34138 at commit [`cfda228`](https://github.com/apache/spark/commit/cfda228a106212f8602cb2bdb33f8f8e4086a935).
* This patch passes all tests.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] [spark] SparkQA commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-929958998
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[GitHub] [spark] dongjoon-hyun commented on a change in pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on a change in pull request #34138:
URL: https://github.com/apache/spark/pull/34138#discussion_r718238895
##########
File path: .github/workflows/build_and_test.yml
##########
@@ -391,8 +391,9 @@ jobs:
LC_ALL: C.UTF-8
LANG: C.UTF-8
PYSPARK_DRIVER_PYTHON: python3.9
+ PYSPARK_PYTHON: python3.9
Review comment:
This aims to prevent the following error currently happening on this PR.
```
RuntimeError: Python in worker has different version 3.8 than that in driver 3.9, PySpark cannot run with different minor versions. Please check environment variables PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.
```
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[GitHub] [spark] dongjoon-hyun commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-929850674
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URL: https://github.com/apache/spark/pull/34138#issuecomment-930382096
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URL: https://github.com/apache/spark/pull/34138#issuecomment-929962183
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[GitHub] [spark] HyukjinKwon commented on a change in pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on a change in pull request #34138:
URL: https://github.com/apache/spark/pull/34138#discussion_r718352609
##########
File path: .github/workflows/build_and_test.yml
##########
@@ -391,8 +391,9 @@ jobs:
LC_ALL: C.UTF-8
LANG: C.UTF-8
PYSPARK_DRIVER_PYTHON: python3.9
+ PYSPARK_PYTHON: python3.9
Review comment:
👍
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[GitHub] [spark] HyukjinKwon commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-930045907
oops seems:
```
Error in loadNamespace(x) : there is no package called ‘markdown’
** knitting documentation of dropTempView
```
`markdown` package missing in the new R installed. I think it should be good to go if tests pass otherwise
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[GitHub] [spark] dongjoon-hyun closed pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun closed pull request #34138:
URL: https://github.com/apache/spark/pull/34138
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[GitHub] [spark] dongjoon-hyun commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-929855453
Thank you, @HyukjinKwon .
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[GitHub] [spark] dongjoon-hyun commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-930443455
SparkR/Linter/PySpark jobs passed. Since the other tests are irrelevant, I'll merge this.
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[GitHub] [spark] HyukjinKwon commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-930045907
oops seems:
```
Error in loadNamespace(x) : there is no package called ‘markdown’
** knitting documentation of dropTempView
```
`markdown` package missing in the new R installed. I think it should be good to go if tests pass otherwise
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[GitHub] [spark] HyukjinKwon commented on a change in pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on a change in pull request #34138:
URL: https://github.com/apache/spark/pull/34138#discussion_r718352609
##########
File path: .github/workflows/build_and_test.yml
##########
@@ -391,8 +391,9 @@ jobs:
LC_ALL: C.UTF-8
LANG: C.UTF-8
PYSPARK_DRIVER_PYTHON: python3.9
+ PYSPARK_PYTHON: python3.9
Review comment:
👍
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[GitHub] [spark] dongjoon-hyun commented on a change in pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on a change in pull request #34138:
URL: https://github.com/apache/spark/pull/34138#discussion_r718238895
##########
File path: .github/workflows/build_and_test.yml
##########
@@ -391,8 +391,9 @@ jobs:
LC_ALL: C.UTF-8
LANG: C.UTF-8
PYSPARK_DRIVER_PYTHON: python3.9
+ PYSPARK_PYTHON: python3.9
Review comment:
This aims to prevent the following error currently happening on this PR.
```
RuntimeError: Python in worker has different version 3.8 than that in driver 3.9, PySpark cannot run with different minor versions. Please check environment variables PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.
```
##########
File path: .github/workflows/build_and_test.yml
##########
@@ -391,8 +391,9 @@ jobs:
LC_ALL: C.UTF-8
LANG: C.UTF-8
PYSPARK_DRIVER_PYTHON: python3.9
+ PYSPARK_PYTHON: python3.9
Review comment:
This aims to prevent the following error currently happening on this PR.
```
RuntimeError: Python in worker has different version 3.8 than that in driver 3.9,
PySpark cannot run with different minor versions. Please check environment variables
PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.
```
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[GitHub] [spark] dongjoon-hyun commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-930367709
`20210930` has `markdown` too.
```
$ docker run -it --rm dongjoon/apache-spark-github-action-image:20210930 R -e 'installed.packages()' | grep '^markdown' | grep 4.1.1
markdown NA NA NA "yes" "4.1.1"
```
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[GitHub] [spark] dongjoon-hyun commented on pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-930445010
The CI was recovered suddenly before this PR. It must be some transient issue from CRAN repository out of sync.
So, I landed this to master only for now. If we hit a similar issue later, we can consider backporting of this.
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Thanks. Yep, it's rebuilding again now with `markdown` package.
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[GitHub] [spark] dongjoon-hyun commented on a change in pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
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dongjoon-hyun commented on a change in pull request #34138:
URL: https://github.com/apache/spark/pull/34138#discussion_r718238895
##########
File path: .github/workflows/build_and_test.yml
##########
@@ -391,8 +391,9 @@ jobs:
LC_ALL: C.UTF-8
LANG: C.UTF-8
PYSPARK_DRIVER_PYTHON: python3.9
+ PYSPARK_PYTHON: python3.9
Review comment:
This aims to prevent the following error currently happening on this PR.
```
RuntimeError: Python in worker has different version 3.8 than that in driver 3.9,
PySpark cannot run with different minor versions. Please check environment variables
PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.
```
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dongjoon-hyun commented on pull request #34138:
URL: https://github.com/apache/spark/pull/34138#issuecomment-929868593
Although `Linter` job is recovered and all SparkR unit tests passed, `sparkr` job fails due to additional `pandoc` requirement. I will rebuild the image with `pandoc`.
```
--- re-building ‘sparkr-vignettes.Rmd’ using rmarkdown
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
```
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cc @HyukjinKwon
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[GitHub] [spark] dongjoon-hyun closed pull request #34138: [SPARK-36883][INFRA] Upgrade R version to 4.1.1 in CI images
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun closed pull request #34138:
URL: https://github.com/apache/spark/pull/34138
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