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Posted to commits@ctakes.apache.org by mm...@apache.org on 2016/12/16 03:55:38 UTC
svn commit: r1774552 [10/11] - in /ctakes/trunk:
ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/util/
ctakes-regression-test/desc/analysis_engine/
ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/
Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml?rev=1774552&r1=1774551&r2=1774552&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml (original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml Fri Dec 16 03:55:37 2016
@@ -24,187 +24,187 @@
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+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="1251" _ref_sofa="3" begin="425" end="426" tokenNumber="107" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="1388" _ref_sofa="3" begin="478" end="482" tokenNumber="119" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="1477" _ref_sofa="3" begin="522" end="523" tokenNumber="127" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="1494" _ref_sofa="3" begin="524" end="525" tokenNumber="129" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="988" _ref_sofa="3" begin="332" end="333" tokenNumber="80" partOfSpeech="SYM"/>
+ <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="1005" _ref_sofa="3" begin="336" end="337" tokenNumber="82" partOfSpeech="NN"/>
<org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="1991" _ref_sofa="3" begin="101" end="103" id="1" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="2009" _ref_sofa="3" begin="154" end="156" id="3" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
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<org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2081" _ref_sofa="3" begin="175" end="180" id="4" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2099" _ref_sofa="3" begin="235" end="240" id="7" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2117" _ref_sofa="3" begin="248" end="253" id="8" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2153" _ref_sofa="3" begin="397" end="402" id="10" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2171" _ref_sofa="3" begin="374" end="382" id="9" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2153" _ref_sofa="3" begin="374" end="382" id="9" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="2171" _ref_sofa="3" begin="397" end="402" id="10" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.DateAnnotation _indexed="1" _id="2045" _ref_sofa="3" begin="207" end="217" id="5" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.DateAnnotation _indexed="1" _id="2189" _ref_sofa="3" begin="522" end="525" id="13" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.RangeAnnotation _indexed="1" _id="2063" _ref_sofa="3" begin="207" end="212" id="6" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
@@ -339,31 +339,31 @@
<org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="2854" _ref_sofa="3" begin="692" end="695"/>
<org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="2858" _ref_sofa="3" begin="702" end="718"/>
<org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="2862" _ref_sofa="3" begin="713" end="732"/>
- <org.apache.ctakes.typesystem.type.textsem.MedicationMention _indexed="1" _id="2880" _ref_sofa="3" begin="705" end="712" id="15" _ref_ontologyConceptArr="2870" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _indexed="1" _id="2934" _ref_sofa="3" begin="50" end="64" id="0" _ref_ontologyConceptArr="2930" typeID="2" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _indexed="1" _id="2978" _ref_sofa="3" begin="660" end="682" id="14" _ref_ontologyConceptArr="2975" typeID="5" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _indexed="1" _id="3019" _ref_sofa="3" begin="728" end="732" id="17" _ref_ontologyConceptArr="3016" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _indexed="1" _id="3062" _ref_sofa="3" begin="723" end="727" id="16" _ref_ontologyConceptArr="3059" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="3049" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" score="0.0" disambiguated="false" cui="Cui0002" tui="T_AS"/>
- <uima.cas.FSArray _id="3059" size="1">
- <i>3049</i>
+ <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _indexed="1" _id="2894" _ref_sofa="3" begin="50" end="64" id="0" _ref_ontologyConceptArr="2890" typeID="2" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _indexed="1" _id="2938" _ref_sofa="3" begin="660" end="682" id="14" _ref_ontologyConceptArr="2935" typeID="5" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _indexed="1" _id="2979" _ref_sofa="3" begin="723" end="727" id="16" _ref_ontologyConceptArr="2976" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _indexed="1" _id="3013" _ref_sofa="3" begin="728" end="732" id="17" _ref_ontologyConceptArr="3010" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.MedicationMention _indexed="1" _id="3053" _ref_sofa="3" begin="705" end="712" id="15" _ref_ontologyConceptArr="3043" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="3046" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM" score="0.0" disambiguated="false"/>
+ <uima.cas.FSArray _id="3043" size="1">
+ <i>3046</i>
</uima.cas.FSArray>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="3006" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" score="0.0" disambiguated="false" cui="Cui0206" tui="T_SS"/>
- <uima.cas.FSArray _id="3016" size="1">
- <i>3006</i>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="3000" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" score="0.0" disambiguated="false" cui="Cui0206" tui="T_SS"/>
+ <uima.cas.FSArray _id="3010" size="1">
+ <i>3000</i>
</uima.cas.FSArray>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2965" codingScheme="SNOMED" code="100102" oid="100102#SNOMED" score="0.0" disambiguated="false" cui="Cui0102" tui="T_PR"/>
- <uima.cas.FSArray _id="2975" size="1">
- <i>2965</i>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2966" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" score="0.0" disambiguated="false" cui="Cui0002" tui="T_AS"/>
+ <uima.cas.FSArray _id="2976" size="1">
+ <i>2966</i>
</uima.cas.FSArray>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2910" codingScheme="SNOMED" code="100309" oid="100309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2920" codingScheme="SNOMED" code="200309" oid="200309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
- <uima.cas.FSArray _id="2930" size="2">
- <i>2920</i>
- <i>2910</i>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2925" codingScheme="SNOMED" code="100102" oid="100102#SNOMED" score="0.0" disambiguated="false" cui="Cui0102" tui="T_PR"/>
+ <uima.cas.FSArray _id="2935" size="1">
+ <i>2925</i>
</uima.cas.FSArray>
- <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="2873" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM" score="0.0" disambiguated="false"/>
- <uima.cas.FSArray _id="2870" size="1">
- <i>2873</i>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2870" codingScheme="SNOMED" code="100309" oid="100309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2880" codingScheme="SNOMED" code="200309" oid="200309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
+ <uima.cas.FSArray _id="2890" size="2">
+ <i>2880</i>
+ <i>2870</i>
</uima.cas.FSArray>
</CAS>