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Posted to commits@dlab.apache.org by lf...@apache.org on 2020/08/07 12:04:33 UTC
[incubator-dlab] 02/03: [DLAB-1974]: added additional check in case
in R package version are invalid characters
This is an automated email from the ASF dual-hosted git repository.
lfrolov pushed a commit to branch DLAB-1974
in repository https://gitbox.apache.org/repos/asf/incubator-dlab.git
commit af2f229ab1f8dcb7883c35ebfe5a92b597e30935
Author: leonidfrolov <fr...@gmail.com>
AuthorDate: Fri Aug 7 15:01:29 2020 +0300
[DLAB-1974]: added additional check in case in R package version are invalid characters
---
infrastructure-provisioning/src/general/lib/os/fab.py | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/infrastructure-provisioning/src/general/lib/os/fab.py b/infrastructure-provisioning/src/general/lib/os/fab.py
index 55c1fc3..1b57861 100644
--- a/infrastructure-provisioning/src/general/lib/os/fab.py
+++ b/infrastructure-provisioning/src/general/lib/os/fab.py
@@ -468,12 +468,14 @@ def install_r_pkg(requisites):
ansi_escape = re.compile(r'\x1b[^m]*m')
version = ansi_escape.sub('', res).split("\r\n")[0].split('"')[1]
status_msg = 'installed'
- if 'Error in download_version_url(package, version, repos, type) :' in err:
+ if 'Error in download_version_url(package, version, repos, type) :' in err or 'Error in parse_deps(paste(spec,' in err:
sudo('R -e \'install.packages("versions", repos="https://cloud.r-project.org", dep=TRUE)\'')
versions = sudo('R -e \'library(versions); available.versions("' + name + '")\' 2>&1 | grep -A 50 '
'\'date available\' | awk \'{print $2}\'').replace('\r\n', ' ')[5:].split(' ')
if versions != ['']:
status_msg = 'invalid_version'
+ else:
+ versions = []
else:
versions = []
status.append({"group": "r_pkg", "name": name, "version": version, "status": status_msg, "error_message": err, "available_versions": versions, "add_pkgs": dep})
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