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svn commit: r1656418 -
/incubator/taverna/site/trunk/content/introduction/taverna-in-use.md
Author: brenninc
Date: Mon Feb 2 09:07:58 2015
New Revision: 1656418
URL: http://svn.apache.org/r1656418
Log:
does markdown links work inside html table?
Added:
incubator/taverna/site/trunk/content/introduction/taverna-in-use.md
Added: incubator/taverna/site/trunk/content/introduction/taverna-in-use.md
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/introduction/taverna-in-use.md?rev=1656418&view=auto
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--- incubator/taverna/site/trunk/content/introduction/taverna-in-use.md (added)
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+Title: Taverna in use
+Notice: Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+ .
+ http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+<p>More than 350 organizations around the world, both academic and commercial, are known to use Taverna. It is employed in a significant number of differing domains to facilitate novel research or to accelerate, formalise or share existing research. See the <a href="http://prototype.taverna.org.uk/introduction/taverna-in-use/by-domain/" target="_blank">domains</a> where Taverna is in use or has been used.<br />
+Taverna applications have been implemented or deployed in several domains using a variety of platforms and technologies:<span id="more-91"></span></p>
+<ul>
+<li>Standalone Workbench (used by the majority of projects)</li>
+<li><a href="/introduction/taverna-in-use/server/">As a server</a></li>
+<li><a href="/introduction/taverna-in-use/grid/">On a grid or using services on a grid</a></li>
+<li><a href="/introduction/taverna-in-use/cloud/">On a cloud</a></li>
+<li><a href="/introduction/taverna-in-use/portal/">Behind a portal</a></li>
+<li><a href="/introduction/taverna-in-use/bundled-with-products/">Bundled with other products</a></li>
+</ul>
+<p>Table below shows the distribution of Taverna application domains per deployment infrastructure.</p>
+<p>View by <a href="/introduction/taverna-in-use-chronology">chronological</a> order of deployment.</p>
+<table id="taverna-usage-table" summary="Distribution of Taverna usage: domain vs. deployment" border="0" cellspacing="0">
+<caption class="taverna-usage-table">Table1. Distribution of Taverna usage: domain vs. deployment</caption>
+<tbody>
+<tr>
+<th class="nobg"></th>
+<th class="bg">Standalone</th>
+<th class="bg">Server</th>
+<th class="bg">Grid</th>
+<th class="bg">Cloud</th>
+<th class="bg">Portal</th>
+<th class="bg">Bundled</th>
+</tr>
+<tr>
+<th class="spec1">Annotation</th>
+<td class="alt1">[Genome annotation][1]<br />
+<a href="/introduction/taverna-in-use/annotation/taweka/">TaWeka</a><br />
+<a href="/introduction/taverna-in-use/annotation/adoption-by-moby/">Moby consortium</a><br />
+<a href="/introduction/related-projects/ispider/">iSpider</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1"><a href="/introduction/taverna-in-use/annotation/afawe/">AFAWE</a></td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Arts</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/arts/composition-of-music/">Composing music</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Astronomy</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/astronomy/sampo/">SAMPO</a></td>
+<td class="alt1"><a href="/introduction/related-projects/helio/">HELIO</a></td>
+<td class="alt1"><a href="/introduction/taverna-in-use/astronomy/astrogrid/">AstroGrid</a><br />
+<a href="/introduction/related-projects/helio/">HELIO</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Biodiversity</th>
+<td class="alt2"><a href="/introduction/related-projects/biovel">BioVeL</a></td>
+<td class="alt2"><a href="/introduction/related-projects/biovel">BioVeL</a></td>
+<td class="alt2">-</td>
+<td class="alt2"><a href="/introduction/related-projects/biovel">BioVel</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Bioinformatics</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/bioinformatics/lumc/">Mass spectrometry data analysis in proteomics</a><br />
+<a href="/introduction/taverna-in-use/bioinformatics/gene-expression-from-microarray/">MicroArray analysis</a><a href="/introduction/taverna-in-use/bioinformatics/measuring-enzyme-characteristics-of-yeast/"><br />
+Measuring yeast characteristics</a><br />
+<a href="/introduction/taverna-in-use/biology/enfin/">ENFIN</a><br />
+<a href="/introduction/taverna-in-use/biology/manchester-centre-for-integrative-systems-biology/">MCISB</a><br />
+<a href="/introduction/taverna-in-use/genome-and-gene-expression/casimir/">CASIMIR</a><br />
+<a href="/introduction/taverna-in-use/genome-and-gene-expression/dgemap/">DGEMap</a><br />
+<a href="/introduction/taverna-in-use/disease-research/graves-disease/">Graves disease</a><br />
+<a href="/introduction/taverna-in-use/bioinformatics/gene-expression-from-microarray/">MicroArray analysis</a><br />
+<a href="/introduction/taverna-in-use/genome-and-gene-expression/sigenae/">SIGENAE</a><br />
+<a href="/introduction/taverna-in-use/disease-research/trypanosomiasis/">Trypanosomiasis</a><br />
+<a href="/introduction/taverna-in-use/disease-research/williams-beuren-syndrome/">Williams-Beuren syndrome</a><br />
+<a href="/introduction/taverna-in-use/disease-research/analysis-of-anthrax-bacterium/">Anthrax analysis</a><br />
+<a href="/introduction/introduction/taverna-in-use/bioinformatics/planet/">PLANET</a><br />
+<a href="/introduction/introduction/taverna-in-use/annotation/annotation-of-genomes/">Annotation of genomes</a><br />
+<a href="/introduction/related-projects/shared-genomics/">Shared Genomics</a><br />
+<a href="/introduction/related-projects/e-fungi/">e-Fungi</a><br />
+<a href="/introduction/taverna-in-use/medicine/eu-adr/">EU-ADR</a><br />
+<a href="/introduction/taverna-in-use/databases/efamily/">eFamily</a><br />
+<a href="/introduction/related-projects/ispider/">iSpider</a></td>
+<td class="alt1"><a href="/introduction/taverna-in-use/disease-research/vph-dareit/">VPH-DATE@IT</a><br />
+<a href="/introduction/taverna-in-use/disease-research/vph-dareit/">VPH-SHARE</a><a href="/introduction/related-projects/shared-genomics/"><br />
+Shared Genomics</a><br />
+<a href="/introduction/related-projects/cagrid/">caGrid</a></td>
+<td class="alt1"><a href="/introduction/taverna-in-use/biology/tav4sb/">Tav4SB</a><br />
+<a href="/introduction/taverna-in-use/medical-imaging/knowarc/">KnowARC</a><br />
+<a href="/introduction/taverna-in-use/medical-imaging/miasgrid/">MIASGrid</a><br />
+<a href="/introduction/related-projects/cagrid/">caGrid</a><br />
+<a href="/introduction/taverna-in-use/databases/embrace/">EMBRACE</a></td>
+<td class="alt1"><a href="/introduction/taverna-in-use/genome-and-gene-expression/next-generation-sequencing">Next generation sequencing</a><br />
+<a href="/introduction/taverna-in-use/genome-and-gene-expression/tavernapbs/">TavernaPBS</a><br />
+<a href="/documentation/taverna-plugins/taverna-2-x-plugins/#opal">Opal</a><br />
+<a href="/introduction/related-projects/tsb/">TSB</a></td>
+<td class="alt1"><a href="/introduction/taverna-in-use/bioinformatics/biowep/">BioWEP</a><br />
+<a href="/introduction/taverna-in-use/biology/planet/">PLANET</a><br />
+<a href="/introduction/taverna-in-use/annotation/afawe/">AFAWE</a><br />
+<a href="/introduction/taverna-in-use/systems-biology/metware/">MetWare</a><br />
+<a href="/introduction/taverna-in-use/protein-and-proteomics/prodom/">ProDom</a><br />
+<a href="/introduction/taverna-in-use/systems-biology/ccpn/">CCPN</a></td>
+<td class="alt1"><a href="/introduction/taverna-in-use/bioinformatics/biolinux/">BioLinux</a><br />
+<a href="/introduction/taverna-in-use/biology/sb-os/">SB.OS</a></td>
+</tr>
+<tr>
+<th class="spec2">Chemistry</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/chemistry/chemistry-development-kit/">CDK</a><br />
+<a href="/introduction/taverna-in-use/chemistry/chemical-informatics-and-cyberinfrastructure-collaboratory/">CICC</a><br />
+<a href="/introduction/related-projects/chemtaverna">ChemTaverna</a><br />
+<a href="http://usefulchem.wikispaces.com/" target="_blank">UsefulChem</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Data and text mining</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/data-and-text-mining/aid/">AID</a><br />
+<a href="/introduction/taverna-in-use/multimedia/course-generator/">Course generator</a><br />
+<a href="/introduction/taverna-in-use/data-and-text-mining/refine/">REFINE</a><br />
+<a href="/introduction/taverna-in-use/data-and-text-mining/open-software-development-workflows/">Open software development wfs</a><br />
+<a href="/introduction/taverna-in-use/annotation/taweka/">TaWeka</a><br />
+<a href="/introduction/related-projects/e-lico">e-LICO</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Databases</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/multimedia/echase/">eCHASE</a><br />
+<a href="/introduction/taverna-in-use/databases/efamily/">eFamily</a><br />
+<a href="/introduction/related-projects/ispider/">iSpider</a><br />
+<a href="/introduction/taverna-in-use/databases/omixed/">omixed</a></td>
+<td class="alt2">-</td>
+<td class="alt2"><a href="/introduction/taverna-in-use/databases/embrace/">EMBRACE</a></td>
+<td class="alt2">-</td>
+<td class="alt2"><a href="/introduction/taverna-in-use/databases/prodom/">ProDom</a></td>
+<td class="alt2"><a href="http://code.google.com/p/calctav/" target="_blank">CalcTav</a></td>
+</tr>
+<tr>
+<th class="spec1">Document and image analysis/<br />
+Digital preservation</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/by-domain/document-analysis/islandora/">Islandora</a><a href="/introduction/related-projects/scape/"><br />
+SCAPE</a><br />
+<a href="/introduction/taverna-in-use/by-domain/document-analysis/impact">IMPACT</a><br />
+<a href="/introduction/taverna-in-use/by-domain/document-analysis/dae">DAE</a></td>
+<td class="alt1"><a href="http://blogs.loc.gov/digitalpreservation/2013/03/islandoras-open-source-ecosystem-and-digital-preservation-an-interview-with-mark-leggott/">Islandora</a><br />
+<a href="/introduction/related-projects/scape/">SCAPE</a><br />
+<a href="/introduction/taverna-in-use/by-domain/document-analysis/impact">IMPACT</a><br />
+<a href="/introduction/taverna-in-use/by-domain/document-analysis/dae">DAE</a></td>
+<td class="alt1">-</td>
+<td class="alt1"><a href="/introduction/related-projects/scape/">SCAPE</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Education</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/multimedia/course-generator/">Course generator</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Engineering</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/engineering/jpl/">JPL</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Geoinformatics</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/by-domain/geoinformatics/pml/">PML</a></td>
+<td class="alt2"><a href="/introduction/taverna-in-use/by-domain/geoinformatics/pml/">PML</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Information quality</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/information-quality/qurator/">Qurator<br />
+</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Multimedia</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/multimedia/course-generator/">Course generator<br />
+</a><a href="/introduction/taverna-in-use/multimedia/echase/">eCHASE</a><a href="/introduction/taverna-in-use/multimedia/course-generator/"><br />
+</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec2">Natural language processing</th>
+<td class="alt2"><a href="/introduction/taverna-in-use/by-domain/natural-language-processing/panacea/">PANACEA</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Service provision</th>
+<td class="alt1"><a href="/introduction/related-projects/engage/">ENGAGE</a></td>
+<td class="alt1"><a href="/introduction/related-projects/shared-genomics/">Shared Genomics</a></td>
+<td class="alt1">-</td>
+<td class="alt1"><a href="/documentation/taverna-plugins/plugins-in-progress/#esc">eScience Central</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Service testing</th>
+<td class="alt2"><a href="/introduction/related-projects/e-fungi/">e-Fungi</a><br />
+<a href="/introduction/taverna-in-use/annotation/adoption-by-moby/">Moby consortium</a><br />
+<a href="/introduction/taverna-in-use/arts/composition-of-music/">Music composition</a><br />
+<a href="/introduction/related-projects/ondex/">ONDEX</a></td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+</tr>
+<tr>
+<th class="spec1">Social sciences</th>
+<td class="alt1"><a href="/introduction/taverna-in-use/social-sciences/impact/">IMPACT</a></td>
+<td class="alt1"><a href="/introduction/introduction/related-projects/neiss/">NeISS</a></td>
+<td class="alt1">-</td>
+<td class="alt1">-</td>
+<td class="alt1"><a href="/introduction/introduction/related-projects/neiss/">NeISS</a></td>
+<td class="alt1">-</td>
+</tr>
+<tr>
+<th class="spec2">Other</th>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2"><a href="/introduction/taverna-in-use/on-a-grid/moteur/">MOTEUR</a><br />
+<a href="http://www.mygrid.org.uk/outreach/collaboration/collaboration-with-nbic/" target="_blank">NBIC</a><br />
+<a href="/introduction/taverna-in-use/on-a-grid/simdat/">SIMDAT</a><br />
+NGS</td>
+<td class="alt2">-</td>
+<td class="alt2">-</td>
+<td class="alt2"><a href="http://www.omii.ac.uk/wiki/SoftwareOverview" target="_blank">OMII</a><br />
+<a href="http://code.google.com/p/calctav/" target="_blank">CalcTav</a></td>
+</tr>
+</tbody>
+</table>
+
+
+ [1]: #annotation-of-genomes
\ No newline at end of file