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Posted to notifications@ctakes.apache.org by "Steven Kahn (JIRA)" <ji...@apache.org> on 2017/02/02 15:18:51 UTC

[jira] [Comment Edited] (CTAKES-412) Unable to Load AggregatePlaintextUMLSProcessor.XML

    [ https://issues.apache.org/jira/browse/CTAKES-412?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15850029#comment-15850029 ] 

Steven Kahn edited comment on CTAKES-412 at 2/2/17 3:18 PM:
------------------------------------------------------------

I have same issue when attempting to process the sample text file on fresh install of v3.2.2 (Windows 10, Java 1.8.0_121)

I checked that my UMLS access is good and it is.Though seeing this error in console (redacted):

 ERROR UmlsUserApprover -   UMLS Account at https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser is not valid for user xxxxxx, ctakes.umlspw=xxxxxx with CHANGEME


was (Author: sgk7777):
I have same issue on fresh install of v3.2.2 (Windows 10, Java 1.8.0_121)

I checked that my UMLS access is good and it is.Though seeing this error in console (redacted):

 ERROR UmlsUserApprover -   UMLS Account at https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser is not valid for user xxxxxx, ctakes.umlspw=xxxxxx with CHANGEME

> Unable to Load AggregatePlaintextUMLSProcessor.XML
> --------------------------------------------------
>
>                 Key: CTAKES-412
>                 URL: https://issues.apache.org/jira/browse/CTAKES-412
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-dictionary-lookup
>    Affects Versions: 3.2.1, 3.2.2
>         Environment: Windows 8.1 , Java 1.8.0_11 
>            Reporter: Rajesh Rajamani
>            Priority: Critical
>              Labels: newbie
>         Attachments: screenshot-1.png
>
>
> Have the following error when attempting to use the UMLS definitions . I attempted using both 3.2.1 and 3.2.2 and still have the same error . 
> Caused by: org.apache.uima.resource.ResourceInitializationException
> 	at org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator.initialize(UmlsDictionaryLookupAnnotator.java:85)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> 	... 55 more
> Caused by: java.net.UnknownHostException: uts-ws.nlm.nih.gov
> 	at java.net.AbstractPlainSocketImpl.connect(Unknown Source)
> 	at java.net.PlainSocketImpl.connect(Unknown Source)
> 	at java.net.SocksSocketImpl.connect(Unknown Source)
> 	at java.net.Socket.connect(Unknown Source)
> 	at sun.security.ssl.SSLSocketImpl.connect(Unknown Source)
> 	at sun.security.ssl.BaseSSLSocketImpl.connect(Unknown Source)
> 	at sun.net.NetworkClient.doConnect(Unknown Source)
> 	at sun.net.www.http.HttpClient.openServer(Unknown Source)
> 	at sun.net.www.http.HttpClient.openServer(Unknown Source)
> 	at sun.net.www.protocol.https.HttpsClient.<init>(Unknown Source)
> 	at sun.net.www.protocol.https.HttpsClient.New(Unknown Source)
> 	at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(Unknown Source)
> 	at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source)
> 	at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source)
> 	at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(Unknown Source)
> 	at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(Unknown Source)
> 	at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(Unknown Source)
> 	at sun.net.www.protocol.https.HttpsURLConnectionImpl.getOutputStream(Unknown Source)
> 	at org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator.isValidUMLSUser(UmlsDictionaryLookupAnnotator.java:99)
> 	at org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator.initialize(UmlsDictionaryLookupAnnotator.java:76)
> 	... 56 more



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