svn commit: r1389618 [1/22] - in /incubator/ctakes/trunk: ./ ctakes-chunker/ ctakes-chunker/desc/ ctakes-chunker/resources/launch/ ctakes-chunker/src/main/java/edu/ ctakes-chunker/src/main/java/org/ ctakes-chunker/src/main/java/org/apache/ ctakes-chunk...

[ch...@apache.org]

Author: chenpei
Date: Mon Sep 24 22:04:51 2012
New Revision: 1389618

URL: http://svn.apache.org/viewvc?rev=1389618&view=rev
Log:
https://issues.apache.org/jira/browse/CTAKES-54
First pass- updating namespaces from org.chboston, edu.mayo, edu.colorado, etc -> org.apach.ctakes)
java srcs, xml descriptor paths, eclipse launch scripts updated.

Added:
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-chunker/src/main/java/edu/mayo/bmi/uima/chunker/ChunkCreator.java
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-chunker/src/main/java/edu/mayo/bmi/uima/chunker/Chunker.java
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-chunker/src/main/java/edu/mayo/bmi/uima/chunker/DefaultChunkCreator.java
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-chunker/src/main/java/edu/mayo/bmi/uima/chunker/PhraseTypeChunkCreator.java
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-chunker/src/main/java/edu/mayo/bmi/uima/adjuster/
    incubator/ctakes/trunk/ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-chunker/src/main/java/edu/mayo/bmi/uima/adjuster/ChunkAdjuster.java
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinical/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/edu/mayo/bmi/uima/cni/ae/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/edu/mayo/bmi/uima/cni/ae/ExtractionPrepAnnotator.java
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/main/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/edu/mayo/bmi/ctakes/main/
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/main/cTAKESCPEGUI.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/edu/mayo/bmi/ctakes/main/cTAKESCPEGUI.java
    incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/main/cTAKESCVDGUI.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/edu/mayo/bmi/ctakes/main/cTAKESCVDGUI.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/MaxentParserWrapper.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ParserWrapper.java
      - copied, changed from r1388103, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/ParserWrapper.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java
      - copied, changed from r1388103, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ConstituencyParser.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ParserEvaluationAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/ae/ParserEvaluationAnnotator.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeExtractor.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeKernel.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/treekernel/TreeKernel.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/co/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/ParserTreeWriterConsumer.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/uima/co/ParserTreeWriterConsumer.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/AnnotationTreeUtils.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/AnnotationTreeUtils.java
    incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/TreeUtils.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-constituency-parser/src/main/java/org/chboston/cnlp/ctakes/parser/util/TreeUtils.java
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/context/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/edu/mayo/bmi/uima/cdt/ae/
    incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-context-tokenizer/src/main/java/edu/mayo/bmi/uima/cdt/ae/ContextDependentTokenizerAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/CopyAnnotator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/CopyAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/FilterAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/FilterAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/NullAnnotator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/NullAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/OverlapAnnotator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/OverlapAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SectionSegmentAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/SectionSegmentAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/SentenceDetector.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SimpleSegmentAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/SimpleSegmentAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SimpleSegmentWithTagsAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/SimpleSegmentWithTagsAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/TokenConverter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/TokenConverter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/TokenizerAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/TokenizerAnnotator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ae/TokenizerAnnotatorPTB.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ae/TokenizerAnnotatorPTB.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/CASConsumerTestDriver.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/CASConsumerTestDriver.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/CasConsumer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/CasConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/FilesInDirectoryCasConsumer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/FilesInDirectoryCasConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/HtmlTableCasConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/NonTerminalConsumer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/NonTerminalConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/NormalizedFilesInDirectoryCasConsumer.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/NormalizedFilesInDirectoryCasConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/TokenFreqCasConsumer.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/TokenFreqCasConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cc/TokenOffsetsCasConsumer.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cc/TokenOffsetsCasConsumer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ci/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ci/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ci/HyphenTextModifierImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ci/HyphenTextModifierImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ci/TextModification.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ci/TextModification.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/ci/TextModifier.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/ci/TextModifier.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cr/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cr/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionCyclicalReads.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cr/FilesInDirectoryCollectionCyclicalReads.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cr/FilesInDirectoryCollectionReader.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cr/JdbcCollectionReader.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/cr/LinesFromFileCollectionReader.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/cr/LinesFromFileCollectionReader.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/BaseTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/BaseTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/CharacterTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/CharacterTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/ContractionTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/ContractionTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/DecimalTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/DecimalTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/IntegerTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/IntegerTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/NewlineTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/NewlineTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/NumberTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/NumberTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/PunctuationTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/PunctuationTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/SymbolTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/SymbolTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/TextTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/TextTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/WordTokenAdapter.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/WordTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/adapters/package.html
      - copied unchanged from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/fsm/adapters/package.html
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/CombineCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/CombineCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/DayNightWordCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/DayNightWordCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/DecimalCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/DecimalCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/DecimalRangeCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/DecimalRangeCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/DecimalValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/DecimalValueCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/DisjoinCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/DisjoinCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/HourMinuteCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/HourMinuteCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/IntegerCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/IntegerCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/IntegerRangeCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/IntegerRangeCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/IntegerValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/IntegerValueCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/NegateCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/NegateCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/NumberCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/NumberCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/PunctuationValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/PunctuationValueCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/RangeCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/RangeCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/RomanNumeralCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/RomanNumeralCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/SymbolValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/SymbolValueCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/TextSetCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/TextSetCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/TextValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/TextValueCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/WordSetCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/WordSetCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/condition/WordValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/condition/WordValueCondition.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/DateFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/DateFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/FSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/FSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/FractionFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/FractionFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/MeasurementFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/NegationFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/NegationFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/PersonTitleFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/PersonTitleFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/RangeFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RomanNumeralFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/RomanNumeralFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/StatusIndicatorFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/StatusIndicatorFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/TimeFSM.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/machine/TimeFSM.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/BaseTokenImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/BaseTokenImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/DateToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/DateToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/FractionToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/FractionToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/MeasurementToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/MeasurementToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/NegationIndicator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/NegationIndicator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/PersonTitleToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/PersonTitleToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/RangeToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/RangeToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/RomanNumeralToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/RomanNumeralToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/StatusIndicator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/StatusIndicator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/output/TimeToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/output/TimeToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/state/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/state/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/state/NamedState.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/state/NamedState.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/state/NonTerminalEndState.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/state/NonTerminalEndState.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/BaseToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/BaseToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/CharacterToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/CharacterToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/ContractionToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/ContractionToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/DecimalToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/DecimalToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/EolToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/EolToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/IntegerToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/IntegerToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/NumberToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/NumberToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/PunctuationToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/PunctuationToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/SymbolToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/SymbolToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/TextToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/TextToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/WordToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/WordToken.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/BaseTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/BaseTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/CharacterTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/CharacterTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/DecimalTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/DecimalTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/IntegerTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/IntegerTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/NumberTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/NumberTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/PunctuationTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/PunctuationTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/TokenConverter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/TokenConverter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/token/adapter/WordTokenAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/fsm/token/adapter/WordTokenAdapter.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/ContractionResult.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/ContractionResult.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/ContractionsPTB.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/ContractionsPTB.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/HyphenatedPTB.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/HyphenatedPTB.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/OffsetComparator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/OffsetComparator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/Token.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/Token.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/Tokenizer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/Tokenizer.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/TokenizerHelper.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/TokenizerHelper.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/nlp/tokenizer/TokenizerPTB.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/nlp/tokenizer/TokenizerPTB.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileLocator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/FileLocator.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileResource.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/FileResource.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileResourceImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/FileResourceImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/JdbcConnectionResource.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/JdbcConnectionResource.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/JdbcConnectionResourceImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/JdbcConnectionResourceImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LinesFromFileStringsResourceImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/LinesFromFileStringsResourceImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LuceneIndexReaderResource.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/LuceneIndexReaderResource.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/LuceneIndexReaderResourceImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/LuceneIndexReaderResourceImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/MaxentModelResource.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/MaxentModelResource.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringIntegerMapResource.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/StringIntegerMapResource.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringIntegerMapResourceImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/StringIntegerMapResourceImpl.java
    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringMapResource.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-core/src/main/java/edu/mayo/bmi/uima/core/resource/StringMapResource.java
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/EndOfSentenceScannerImpl.java
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/DocumentSection.java
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/JCasUtil.java
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListFactory.java
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    incubator/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/ParamUtil.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/helpers/MatType.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/helpers/PairType.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/helpers/Span.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/helpers/SpanAlignment.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/helpers/SpanOffsetComparator.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/util/CorefConsts.java
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    incubator/ctakes/trunk/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/util/MarkableDepUtils.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/util/TestClearParserAnalysisEngines.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/util/WriteClearParserDescriptors.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/util/XMIReader.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/ClearDependencyUtility.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/Delim.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyPath.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyRegex.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyUtility.java
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    incubator/ctakes/trunk/ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/SRLUtility.java
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    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/BaseDictionaryImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/BaseDictionaryImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/BaseMetaDataHitImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/BaseMetaDataHitImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/Dictionary.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/Dictionary.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/DictionaryEngine.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/DictionaryEngine.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/DictionaryException.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/DictionaryException.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/GenericMetaDataHitImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/GenericMetaDataHitImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/MetaDataHit.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/MetaDataHit.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/MetaDataHitComparator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/MetaDataHitComparator.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/MetaDataHitConst.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/MetaDataHitConst.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/BaseLookupConsumerImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/BaseLookupConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/DebugConsumerImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/DebugConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/DictionaryLookupAnnotator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/DictionaryLookupAnnotator.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/DirectLookupInitializerImpl.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/DirectLookupInitializerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/FirstTokenPermLookupInitializerImpl.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/FirstTokenPermLookupInitializerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupAnnotationToJCasAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/LookupAnnotationToJCasAdapter.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupConsumer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/LookupConsumer.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupInitializer.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/LookupInitializer.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilities.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/LookupParseUtilities.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupSpec.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/LookupSpec.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/NamedEntityLookupConsumerImpl.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/NamedEntityLookupConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/OrangeBookFilterConsumerImpl.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/OrangeBookFilterConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/UmlsDictionaryLookupAnnotator.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedConsumerImpl.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/UmlsToSnomedConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedDbConsumerImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/UmlsToSnomedDbConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/uima/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/algorithms/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/DirectPassThroughImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/algorithms/DirectPassThroughImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/algorithms/FirstTokenPermutationImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/LookupAlgorithm.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/algorithms/LookupAlgorithm.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/PermutationUtil.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/algorithms/PermutationUtil.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/CollectionFilter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/CollectionFilter.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/FilterException.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/FilterException.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/MetaDataPostLookupFilterImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/MetaDataPostLookupFilterImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/PostLookupFilter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/PostLookupFilter.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/PostLookupFilterGroupImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/PostLookupFilterGroupImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/PreLookupFilter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/PreLookupFilter.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/SetValuePostLookupFilterImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/SetValuePostLookupFilterImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/StringPreLookupFilterImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/StringPreLookupFilterImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/filter/TruncateCollectionFilterImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/filter/TruncateCollectionFilterImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/jdbc/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/jdbc/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/jdbc/JdbcDictionaryImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/jdbc/JdbcDictionaryImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/lucene/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/lucene/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/lucene/LuceneDictionaryImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/lucene/LuceneDictionaryImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/lucene/LuceneDocumentMetaDataHitImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/lucene/LuceneDocumentMetaDataHitImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/phrasebuilder/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/phrasebuilder/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/phrasebuilder/PhraseBuilder.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/phrasebuilder/PhraseBuilder.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/phrasebuilder/VariantPhraseBuilderImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/phrasebuilder/VariantPhraseBuilderImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraint.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/FieldConstraint.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/FieldConstraintImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/StringTable.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/StringTable.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/StringTableDictionaryImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/StringTableDictionaryImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/StringTableFactory.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/StringTableFactory.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/StringTableRow.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/StringTableRow.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/StringTableRowMetaDataHitImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/dictionary/strtable/StringTableRowMetaDataHitImpl.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/vo/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/vo/
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/vo/LookupAnnotation.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/vo/LookupAnnotation.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/vo/LookupAnnotationToTokAdapter.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/vo/LookupAnnotationToTokAdapter.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/vo/LookupHit.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/vo/LookupHit.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/vo/LookupToken.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/vo/LookupToken.java
    incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/vo/LookupTokenComparator.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-dictionary-lookup/src/main/java/edu/mayo/bmi/lookup/vo/LookupTokenComparator.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drug/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drug/ner/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drug/ner/fsm/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/DrugMention.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/DrugMention.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/DrugModel.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/DrugModel.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/CopyDrugAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/ae/CopyDrugAnnotator.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/ae/DrugMentionAnnotator.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/impl/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/ae/impl/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/impl/NegContextInitializerImpl.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/ae/impl/NegContextInitializerImpl.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/cc/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/cc/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/cc/ConsumeNamedEntityRecordModel.java
      - copied, changed from r1388196, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/cc/ConsumeNamedEntityRecordModel.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/AssociatedCodeElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/AssociatedCodeElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/AssociatedPrimaryCodeElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/AssociatedPrimaryCodeElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/AssociatedSecondaryCodeElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/AssociatedSecondaryCodeElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/ConfidenceScoreElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/ConfidenceScoreElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/DosageElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/DosageElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/DrugChangeStatusElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/DrugChangeStatusElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/DurationElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/DurationElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/FormElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/FormElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/FrequencyElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/FrequencyElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/FrequencyUnitElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/FrequencyUnitElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/RouteElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/RouteElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/StartDateElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/StartDateElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/StrengthElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/StrengthElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/StrengthUnitElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/StrengthUnitElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/elements/TextMentionElement.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/uima/ner/elements/TextMentionElement.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/
      - copied from r1388049, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/ContainsSetTextValueCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/ContainsSetTextValueCondition.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/DecimalStrengthStatusCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/DecimalStrengthStatusCondition.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/DosageCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/DosageCondition.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/DrugChangeStatusCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/DrugChangeStatusCondition.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/FormCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/FormCondition.java
    incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/elements/conditions/FractionCondition.java
      - copied, changed from r1388092, incubator/ctakes/trunk/ctakes-drug-ner/src/main/java/edu/mayo/bmi/fsm/ner/elements/conditions/FractionCondition.java

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