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Posted to issues@spark.apache.org by "Andrei Stankevich (Jira)" <ji...@apache.org> on 2020/02/04 02:53:00 UTC
[jira] [Updated] (SPARK-30720) Spark framework hangs and becomes
inactive on Mesos UI if executor can not connect to shuffle external
service.
[ https://issues.apache.org/jira/browse/SPARK-30720?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Andrei Stankevich updated SPARK-30720:
--------------------------------------
Description:
We are using spark 2.4.3 with mesos and with external shuffle service. External shuffle service is launched using systemd by command `exec /*/spark/bin/spark-class org.apache.spark.deploy.mesos.MesosExternalShuffleService`
Sometimes spark executor has connection timeout when it tries to connect to external shuffle service. When it happens spark executor throws an exception
`ERROR BlockManager: Failed to connect to external shuffle server, will retry 4 more times after waiting 5 seconds...`
If connection timeout happens 4 more times spark executor throws an error
`ERROR CoarseGrainedExecutorBackend: Executor self-exiting due to : Unable to create executor due to Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337`
After this error Spark application just hangs. On Mesos UI it goes to inactive frameworks and on Spark Driver UI I can see few failed tasks and looks like it does nothing.
Full spark executor log is
```
20/01/31 16:27:09 ERROR BlockManager: Failed to connect to external shuffle server, will retry 1 more times after waiting 5 seconds...
java.io.IOException: Failed to connect to our-host.com/10.103.*.*:7337
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createUnmanagedClient(TransportClientFactory.java:201)
at org.apache.spark.network.shuffle.ExternalShuffleClient.registerWithShuffleServer(ExternalShuffleClient.java:142)
at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:295)
at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
at org.apache.spark.storage.BlockManager.registerWithExternalShuffleServer(BlockManager.scala:291)
at org.apache.spark.storage.BlockManager.initialize(BlockManager.scala:265)
at org.apache.spark.executor.Executor.<init>(Executor.scala:118)
at org.apache.spark.executor.CoarseGrainedExecutorBackend$$anonfun$receive$1.applyOrElse(CoarseGrainedExecutorBackend.scala:83)
at org.apache.spark.rpc.netty.Inbox.$anonfun$process$1(Inbox.scala:117)
at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:102)
at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection timed out: our-host.com/10.103.*.*:7337
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
... 1 more
Caused by: java.net.ConnectException: Connection timed out
... 11 more
20/01/31 16:29:25 ERROR CoarseGrainedExecutorBackend: Executor self-exiting due to : Unable to create executor due to Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337
org.apache.spark.SparkException: Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337
at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:304)
at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
at org.apache.spark.storage.BlockManager.registerWithExternalShuffleServer(BlockManager.scala:291)
at org.apache.spark.storage.BlockManager.initialize(BlockManager.scala:265)
at org.apache.spark.executor.Executor.<init>(Executor.scala:118)
at org.apache.spark.executor.CoarseGrainedExecutorBackend$$anonfun$receive$1.applyOrElse(CoarseGrainedExecutorBackend.scala:83)
at org.apache.spark.rpc.netty.Inbox.$anonfun$process$1(Inbox.scala:117)
at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:102)
at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.io.IOException: Failed to connect to our-host.com/10.103.*.*:7337
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createUnmanagedClient(TransportClientFactory.java:201)
at org.apache.spark.network.shuffle.ExternalShuffleClient.registerWithShuffleServer(ExternalShuffleClient.java:142)
at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:295)
... 12 more
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection timed out: our-host.com/10.103.*.*:7337
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
... 1 more
Caused by: java.net.ConnectException: Connection timed out
... 11 more
20/01/31 16:29:25 INFO DiskBlockManager: Shutdown hook called
20/01/31 16:29:25 INFO ShutdownHookManager: Shutdown hook called
I0131 16:29:25.446748 3768 executor.cpp:1039] Command exited with status 1 (pid: 3795)
I0131 16:29:26.447976 3794 process.cpp:935] Stopped the socket accept loop
```
was:
We are using spark 2.4.3 with mesos and with external shuffle service. External shuffle service is launched using systemd by command `
exec /*/spark/bin/spark-class org.apache.spark.deploy.mesos.MesosExternalShuffleService
`
Sometimes spark executor has connection timeout when it tries to connect to external shuffle service. When it happens spark executor throws an exception
`ERROR BlockManager: Failed to connect to external shuffle server, will retry 4 more times after waiting 5 seconds...`
If connection timeout happens 4 more times spark executor throws an error
`ERROR CoarseGrainedExecutorBackend: Executor self-exiting due to : Unable to create executor due to Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337`
After this error Spark application just hangs. On Mesos UI it goes to inactive frameworks and on Spark Driver UI I can see few failed tasks and looks like it does nothing.
Full spark executor log is
```
20/01/31 16:27:09 ERROR BlockManager: Failed to connect to external shuffle server, will retry 1 more times after waiting 5 seconds...
java.io.IOException: Failed to connect to our-host.com/10.103.*.*:7337
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createUnmanagedClient(TransportClientFactory.java:201)
at org.apache.spark.network.shuffle.ExternalShuffleClient.registerWithShuffleServer(ExternalShuffleClient.java:142)
at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:295)
at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
at org.apache.spark.storage.BlockManager.registerWithExternalShuffleServer(BlockManager.scala:291)
at org.apache.spark.storage.BlockManager.initialize(BlockManager.scala:265)
at org.apache.spark.executor.Executor.<init>(Executor.scala:118)
at org.apache.spark.executor.CoarseGrainedExecutorBackend$$anonfun$receive$1.applyOrElse(CoarseGrainedExecutorBackend.scala:83)
at org.apache.spark.rpc.netty.Inbox.$anonfun$process$1(Inbox.scala:117)
at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:102)
at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection timed out: our-host.com/10.103.*.*:7337
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
... 1 more
Caused by: java.net.ConnectException: Connection timed out
... 11 more
20/01/31 16:29:25 ERROR CoarseGrainedExecutorBackend: Executor self-exiting due to : Unable to create executor due to Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337
org.apache.spark.SparkException: Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337
at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:304)
at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
at org.apache.spark.storage.BlockManager.registerWithExternalShuffleServer(BlockManager.scala:291)
at org.apache.spark.storage.BlockManager.initialize(BlockManager.scala:265)
at org.apache.spark.executor.Executor.<init>(Executor.scala:118)
at org.apache.spark.executor.CoarseGrainedExecutorBackend$$anonfun$receive$1.applyOrElse(CoarseGrainedExecutorBackend.scala:83)
at org.apache.spark.rpc.netty.Inbox.$anonfun$process$1(Inbox.scala:117)
at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:102)
at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.io.IOException: Failed to connect to our-host.com/10.103.*.*:7337
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
at org.apache.spark.network.client.TransportClientFactory.createUnmanagedClient(TransportClientFactory.java:201)
at org.apache.spark.network.shuffle.ExternalShuffleClient.registerWithShuffleServer(ExternalShuffleClient.java:142)
at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:295)
... 12 more
Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection timed out: our-host.com/10.103.*.*:7337
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
... 1 more
Caused by: java.net.ConnectException: Connection timed out
... 11 more
20/01/31 16:29:25 INFO DiskBlockManager: Shutdown hook called
20/01/31 16:29:25 INFO ShutdownHookManager: Shutdown hook called
I0131 16:29:25.446748 3768 executor.cpp:1039] Command exited with status 1 (pid: 3795)
I0131 16:29:26.447976 3794 process.cpp:935] Stopped the socket accept loop
```
> Spark framework hangs and becomes inactive on Mesos UI if executor can not connect to shuffle external service.
> ---------------------------------------------------------------------------------------------------------------
>
> Key: SPARK-30720
> URL: https://issues.apache.org/jira/browse/SPARK-30720
> Project: Spark
> Issue Type: Bug
> Components: Spark Core
> Affects Versions: 2.4.3
> Reporter: Andrei Stankevich
> Priority: Major
>
> We are using spark 2.4.3 with mesos and with external shuffle service. External shuffle service is launched using systemd by command `exec /*/spark/bin/spark-class org.apache.spark.deploy.mesos.MesosExternalShuffleService`
> Sometimes spark executor has connection timeout when it tries to connect to external shuffle service. When it happens spark executor throws an exception
> `ERROR BlockManager: Failed to connect to external shuffle server, will retry 4 more times after waiting 5 seconds...`
> If connection timeout happens 4 more times spark executor throws an error
> `ERROR CoarseGrainedExecutorBackend: Executor self-exiting due to : Unable to create executor due to Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337`
>
> After this error Spark application just hangs. On Mesos UI it goes to inactive frameworks and on Spark Driver UI I can see few failed tasks and looks like it does nothing.
>
> Full spark executor log is
> ```
> 20/01/31 16:27:09 ERROR BlockManager: Failed to connect to external shuffle server, will retry 1 more times after waiting 5 seconds...
> java.io.IOException: Failed to connect to our-host.com/10.103.*.*:7337
> at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
> at org.apache.spark.network.client.TransportClientFactory.createUnmanagedClient(TransportClientFactory.java:201)
> at org.apache.spark.network.shuffle.ExternalShuffleClient.registerWithShuffleServer(ExternalShuffleClient.java:142)
> at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:295)
> at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
> at org.apache.spark.storage.BlockManager.registerWithExternalShuffleServer(BlockManager.scala:291)
> at org.apache.spark.storage.BlockManager.initialize(BlockManager.scala:265)
> at org.apache.spark.executor.Executor.<init>(Executor.scala:118)
> at org.apache.spark.executor.CoarseGrainedExecutorBackend$$anonfun$receive$1.applyOrElse(CoarseGrainedExecutorBackend.scala:83)
> at org.apache.spark.rpc.netty.Inbox.$anonfun$process$1(Inbox.scala:117)
> at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
> at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:102)
> at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection timed out: our-host.com/10.103.*.*:7337
> at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
> at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
> at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
> at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
> at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
> at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
> at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
> at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
> at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
> at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
> ... 1 more
> Caused by: java.net.ConnectException: Connection timed out
> ... 11 more
> 20/01/31 16:29:25 ERROR CoarseGrainedExecutorBackend: Executor self-exiting due to : Unable to create executor due to Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337
> org.apache.spark.SparkException: Unable to register with external shuffle server due to : Failed to connect to our-host.com/10.103.*.*:7337
> at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:304)
> at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
> at org.apache.spark.storage.BlockManager.registerWithExternalShuffleServer(BlockManager.scala:291)
> at org.apache.spark.storage.BlockManager.initialize(BlockManager.scala:265)
> at org.apache.spark.executor.Executor.<init>(Executor.scala:118)
> at org.apache.spark.executor.CoarseGrainedExecutorBackend$$anonfun$receive$1.applyOrElse(CoarseGrainedExecutorBackend.scala:83)
> at org.apache.spark.rpc.netty.Inbox.$anonfun$process$1(Inbox.scala:117)
> at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
> at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:102)
> at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.io.IOException: Failed to connect to our-host.com/10.103.*.*:7337
> at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:245)
> at org.apache.spark.network.client.TransportClientFactory.createUnmanagedClient(TransportClientFactory.java:201)
> at org.apache.spark.network.shuffle.ExternalShuffleClient.registerWithShuffleServer(ExternalShuffleClient.java:142)
> at org.apache.spark.storage.BlockManager.$anonfun$registerWithExternalShuffleServer$3(BlockManager.scala:295)
> ... 12 more
> Caused by: io.netty.channel.AbstractChannel$AnnotatedConnectException: Connection timed out: our-host.com/10.103.*.*:7337
> at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
> at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
> at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:323)
> at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:340)
> at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:633)
> at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:580)
> at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:497)
> at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:459)
> at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:858)
> at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:138)
> ... 1 more
> Caused by: java.net.ConnectException: Connection timed out
> ... 11 more
> 20/01/31 16:29:25 INFO DiskBlockManager: Shutdown hook called
> 20/01/31 16:29:25 INFO ShutdownHookManager: Shutdown hook called
> I0131 16:29:25.446748 3768 executor.cpp:1039] Command exited with status 1 (pid: 3795)
> I0131 16:29:26.447976 3794 process.cpp:935] Stopped the socket accept loop
> ```
>
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