RE: Apache cTAKES 4.0.0.1 : UMLS Authentication Patch [EXTERNAL] [SUSPICIOUS]

["Savova, Guergana" <Gu...@childrens.harvard.edu>]

+1
Amazing effort by the community led by Sean and Peter, thank you!
--Guergana

-----Original Message-----
From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu] 
Sent: Thursday, January 21, 2021 7:16 AM
To: dev@ctakes.apache.org
Subject: Re: Apache cTAKES 4.0.0.1 : UMLS Authentication Patch [EXTERNAL] [SUSPICIOUS]

* External Email - Caution *


Seconded, thanks a lot Sean and Peter for getting this working and turned around so quickly! 
Tim

On Wed, 2021-01-20 at 23:13 +0100, Peter Abramowitsch wrote:
> * External Email - Caution *
> 
> 
> Thanks Sean!
> 
> Peter
> 
> On Wed, Jan 20, 2021 at 4:25 PM Finan, Sean < 
> Sean.Finan@childrens.harvard.edu> wrote:
> 
> > ???As some have experienced, the U.S.A. National Library of Medicine 
> > (NLM) has changed the authentication method for using the Unified 
> > Medical Language System (UMLS).
> > 
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__www.nlm.nih.gov
> > _research_umls_index.html&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZM
> > SdioCoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrH
> > Eo8uYx6674h&m=KoUGdRx91vEVMVc0CokYc1Uhsfa38K34Dhhd8GDDdhA&s=CVA7xXHE
> > y4dOSNfEju1Or1cr6KZd3QY7bnY4yIDye3I&e=
> > 
> > 
> > Though a bit late in its arrival, Apache cTAKES now has a patch 
> > release that supports the new UMLS authentication method.
> > 
> > 
> > The release number is 4.0.0.1, an update of the previous release 
> > version
> > 4.0.0 with a single change to enable the new UMLS authentication.
> > 
> > No other code or functionality has been modified and there are no 
> > enhancements to the previous release 4.0.0
> > 
> > 
> > There are instructions for use on the Apache cTAKES wiki.
> > 
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.or
> > g_confluence_display_CTAKES_cTAKES-2B4.0.0.1&d=DwIBaQ&c=qS4goWBT7pop
> > lM69zy_3xhKwEW14JZMSdioCoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDR
> > RNQXipowRLRjx0ibQrHEo8uYx6674h&m=KoUGdRx91vEVMVc0CokYc1Uhsfa38K34Dhh
> > d8GDDdhA&s=5Fxduqd71TO5P2AWuZyzAYmaBG1BiOM7G3mWXN-ljqo&e=
> > 
> > 
> > The source code is available in the 4.0.0.1 tag Subversion (svn) 
> > repository.
> > 
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__svn.apache.org_
> > repos_asf_ctakes_tags_ctakes-2D4.0.0.1_&d=DwIBaQ&c=qS4goWBT7poplM69z
> > y_3xhKwEW14JZMSdioCoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXi
> > powRLRjx0ibQrHEo8uYx6674h&m=KoUGdRx91vEVMVc0CokYc1Uhsfa38K34Dhhd8GDD
> > dhA&s=1jNLJHU_4gH08DUNZDjfC4BLGsPSKdiOe63D48Qqekw&e=
> > 
> > 
> > The jar and pom files are available from maven central and any 
> > Applications utilizing Apache cTAKES as an Apache Maven dependency 
> > should update their pom files.
> > 
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__search.maven.or
> > g_search-3Fq-3Dctakes&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdio
> > CoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8u
> > Yx6674h&m=KoUGdRx91vEVMVc0CokYc1Uhsfa38K34Dhhd8GDDdhA&s=7ICwdr1JlzQe
> > T2skY6TMXmU_u3WAZlxTYKpIZGmGQfs&e=
> > 
> > 
> > At this time the Apache infra script that points mirror download 
> > servers to the pre-built zip/archive files has not run.  I hope that 
> > the mirror servers are updated in a day or two.
> > 
> > When the mirror servers are updated the buttons on the "Downloads"
> > page of
> > ctakes.apache.org should trigger a download of the patch version.  
> > Until then you will get a "page not found" error.
> > 
> > Until the pre-built archive downloads are available through the 
> > website, you can find them in the release repository.
> > 
> > 
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__repository.apac
> > he.org_content_repositories_releases_org_apache_ctakes_ctakes-2Dcore
> > _4.0.0.1_&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=H
> > eup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=Ko
> > UGdRx91vEVMVc0CokYc1Uhsfa38K34Dhhd8GDDdhA&s=uM_5s0vlGN8eJc1nK4s9RPxN
> > Q2o5KB3vWRC1M0qo2HU&e=
> > 
> > 
> > For more information please visit the wiki page on the Apache cTAKES
> > 4.0.0.1 patch release.
> > 
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.or
> > g_confluence_display_CTAKES_cTAKES-2B4.0.0.1&d=DwIBaQ&c=qS4goWBT7pop
> > lM69zy_3xhKwEW14JZMSdioCoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDR
> > RNQXipowRLRjx0ibQrHEo8uYx6674h&m=KoUGdRx91vEVMVc0CokYc1Uhsfa38K34Dhh
> > d8GDDdhA&s=5Fxduqd71TO5P2AWuZyzAYmaBG1BiOM7G3mWXN-ljqo&e=
> > 
> > 
> > 
> > A very special thanks goes to Peter Abramowitsch for conception and 
> > original implementation of the authentication code and workflow.
> > 
> > 
> > Many thanks to those who boldly tested, documented and otherwise 
> > made this patch and its trunk equivalent possible, including
> > 
> > Kean Kaufmann
> > 
> > Gandhi Rajan
> > 
> > Eugenia Monogyiou
> > 
> > Timothy Miller
> > 
> > and anybody else that I have forgotten (apologies).
> > 
> > 
> > ?And for those of you gave gave me a bit of prodding to get this 
> > wrapped up and published ... in the end I am grateful and you have 
> > done us all a service.
> > 
> > 
> > Cheers,
> > 
> > Sean
> > 
> >