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Posted to jira@arrow.apache.org by "Jed Phillips (Jira)" <ji...@apache.org> on 2022/06/03 09:39:00 UTC

[jira] [Updated] (ARROW-16748) [R] CRAN Installation error on CentOS cluster

     [ https://issues.apache.org/jira/browse/ARROW-16748?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jed Phillips updated ARROW-16748:
---------------------------------
    Description: 
I am trying to install R arrow on a university cluster that's running CentOS v 7.9.2009. I've tried all of the options on [https://arrow.apache.org/docs/r/,] but continually get the same cryptic error:

 
{code:R}
[ 34%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/c/bridge.cc.o
In file included from /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/c/bridge.cc:42:0:
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h: In member function ‘void arrow::internal::StaticVectorStorage<T, N, D>::move_construct(arrow::internal::StaticVectorStorage<T, N, D>&&)’:
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h:98:44: error: invalid use of qualified-name ‘::move_construct_several’
       storage_type::move_construct_several(other.static_data_, static_data_, size_, N);
                                            ^
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h: In member function ‘void arrow::internal::StaticVectorStorage<T, N, D>::clear()’:
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h:109:35: error: invalid use of qualified-name ‘::destroy_several’
     storage_type::destroy_several(static_data_, size_);
                                   ^
make[2]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/c/bridge.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/all] Error 2
gmake: *** [all] Error 2
 * 
 ** 
 *** 
 **** Error building Arrow C++.  
{code}

Here's the gcc/g++ backend that's loaded

{code}
[jm@login-17 r]$ /cluster/apps/gcc/5.2.0/bin/g++ --version
g++ (GCC) 5.2.0
[jm@login-17 r]$ /cluster/apps/gcc/5.2.0/bin/gcc --version
gcc (GCC) 5.2.0
{code}

I've also tried with gcc/g++ v 6.3.0, with the same error. And get this regardless of whether I try to build from source, install from specific repos, or fix the known issues for CentOS.

 

Any thoughts on what the problem is?

  was:
I am trying to install R arrow on a university cluster that's running CentOS v 7.9.2009. I've tried all of the options on [https://arrow.apache.org/docs/r/,] but continually get the same cryptic error:

 
[ 34%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/c/bridge.cc.o
In file included from /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/c/bridge.cc:42:0:
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h: In member function ‘void arrow::internal::StaticVectorStorage<T, N, D>::move_construct(arrow::internal::StaticVectorStorage<T, N, D>&&)’:
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h:98:44: error: invalid use of qualified-name ‘::move_construct_several’
       storage_type::move_construct_several(other.static_data_, static_data_, size_, N);
                                            ^
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h: In member function ‘void arrow::internal::StaticVectorStorage<T, N, D>::clear()’:
/tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h:109:35: error: invalid use of qualified-name ‘::destroy_several’
     storage_type::destroy_several(static_data_, size_);
                                   ^
make[2]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/c/bridge.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/all] Error 2
gmake: *** [all] Error 2
 * 
 ** 
 *** 
 **** Error building Arrow C++.  

Here's the gcc/g++ backend that's loaded


[jm@login-17 r]$ /cluster/apps/gcc/5.2.0/bin/g++ --version
g++ (GCC) 5.2.0
[jm@login-17 r]$ /cluster/apps/gcc/5.2.0/bin/gcc --version
gcc (GCC) 5.2.0


I've also tried with gcc/g++ v 6.3.0, with the same error. And get this regardless of whether I try to build from source, install from specific repos, or fix the known issues for CentOS.

 

Any thoughts on what the problem is?

        Summary: [R] CRAN Installation error on CentOS cluster   (was: [R} CRAN Installation error on CentOS cluster )

> [R] CRAN Installation error on CentOS cluster 
> ----------------------------------------------
>
>                 Key: ARROW-16748
>                 URL: https://issues.apache.org/jira/browse/ARROW-16748
>             Project: Apache Arrow
>          Issue Type: Bug
>         Environment: CentOS 7.9.2009
>            Reporter: Jed Phillips
>            Priority: Major
>
> I am trying to install R arrow on a university cluster that's running CentOS v 7.9.2009. I've tried all of the options on [https://arrow.apache.org/docs/r/,] but continually get the same cryptic error:
>  
> {code:R}
> [ 34%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/c/bridge.cc.o
> In file included from /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/c/bridge.cc:42:0:
> /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h: In member function ‘void arrow::internal::StaticVectorStorage<T, N, D>::move_construct(arrow::internal::StaticVectorStorage<T, N, D>&&)’:
> /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h:98:44: error: invalid use of qualified-name ‘::move_construct_several’
>        storage_type::move_construct_several(other.static_data_, static_data_, size_, N);
>                                             ^
> /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h: In member function ‘void arrow::internal::StaticVectorStorage<T, N, D>::clear()’:
> /tmp/RtmpIAcCpl/R.INSTALL352b6de22db6/arrow/tools/cpp/src/arrow/util/small_vector.h:109:35: error: invalid use of qualified-name ‘::destroy_several’
>      storage_type::destroy_several(static_data_, size_);
>                                    ^
> make[2]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/c/bridge.cc.o] Error 1
> make[2]: *** Waiting for unfinished jobs....
> make[1]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/all] Error 2
> gmake: *** [all] Error 2
>  * 
>  ** 
>  *** 
>  **** Error building Arrow C++.  
> {code}
> Here's the gcc/g++ backend that's loaded
> {code}
> [jm@login-17 r]$ /cluster/apps/gcc/5.2.0/bin/g++ --version
> g++ (GCC) 5.2.0
> [jm@login-17 r]$ /cluster/apps/gcc/5.2.0/bin/gcc --version
> gcc (GCC) 5.2.0
> {code}
> I've also tried with gcc/g++ v 6.3.0, with the same error. And get this regardless of whether I try to build from source, install from specific repos, or fix the known issues for CentOS.
>  
> Any thoughts on what the problem is?



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