Change in asterixdb[master]: Fix upsert deadlock and upsert with filtered primary only

["abdullah alamoudi (Code Review)" <do...@asterixdb.incubator.apache.org>]

Hello Jenkins,

I'd like you to reexamine a change.  Please visit

    https://asterix-gerrit.ics.uci.edu/1762

to look at the new patch set (#3).

Change subject: Fix upsert deadlock and upsert with filtered primary only
......................................................................

Fix upsert deadlock and upsert with filtered primary only

This change fixes a deadlock that happens when 3 operations
an upsert, a search and a flush happen simulteniously.
If all the memory components are full, the upsert
gets blocked, the upsert could've obtained a lock on the
search key which would block the search not allowing it
to exit the components and not allowing the components
to be cleared and reused.

In addition, the change refactors common LSM index
code.

Change-Id: I93fac0f27ab0b3cc071ff38aef90d850cbbce488
---
M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/dataflow/NoOpFrameOperationCallbackFactory.java
M asterixdb/asterix-external-data/src/main/java/org/apache/asterix/external/operators/ExternalFilesIndexModificationOperatorDescriptor.java
M asterixdb/asterix-external-data/src/main/java/org/apache/asterix/external/operators/ExternalIndexBulkModifyOperatorDescriptor.java
M asterixdb/asterix-external-data/src/main/java/org/apache/asterix/external/operators/ExternalIndexBulkModifyOperatorNodePushable.java
M asterixdb/asterix-metadata/src/main/java/org/apache/asterix/metadata/utils/SecondaryIndexOperationsHelper.java
M asterixdb/asterix-runtime/src/main/java/org/apache/asterix/runtime/operators/LSMPrimaryUpsertOperatorNodePushable.java
M hyracks-fullstack/hyracks/hyracks-api/src/main/java/org/apache/hyracks/api/exceptions/ErrorCode.java
M hyracks-fullstack/hyracks/hyracks-api/src/main/resources/errormsg/en.properties
M hyracks-fullstack/hyracks/hyracks-storage-am-btree/src/main/java/org/apache/hyracks/storage/am/btree/impls/BTree.java
M hyracks-fullstack/hyracks/hyracks-storage-am-btree/src/main/java/org/apache/hyracks/storage/am/btree/impls/BTreeCountingSearchCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-btree/src/main/java/org/apache/hyracks/storage/am/btree/impls/BTreeRangeSearchCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/api/ITreeIndexCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/impls/AbstractTreeIndex.java
M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/impls/TreeIndexDiskOrderScanCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/tuples/DualTupleReference.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTree.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTreeOpContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTreeWithBuddy.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTreeWithBuddyOpContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTree.java
A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeBulkLoader.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeFlushOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeMergeOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeOpContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreePointSearchCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeSearchCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeWithBuddyAbstractCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeWithBuddyMergeOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/IFrameOperationCallback.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMComponentFilterFactory.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMHarness.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIOOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIndex.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIndexAccessor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIndexOperationContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ITwoPCIndex.java
A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AbstractIoOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AbstractLSMIndex.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AbstractLSMIndexOperationContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AsynchronousScheduler.java
A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/FlushOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMComponentFilterFactory.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMHarness.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMIndexReplicationJob.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMIndexSearchCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMTreeIndexAccessor.java
A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/MergeOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndex.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexAccessor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexFlushOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexMergeOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexOpContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/AbstractLSMRTree.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/ExternalRTree.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/ExternalRTreeOpContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTree.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeAbstractCursor.java
A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeAccessor.java
A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeBulkLoader.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeFlushOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeMergeOperation.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeOpContext.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeWithAntiMatterTuples.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeWithAntiMatterTuplesFlushCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/TreeTupleSorter.java
M hyracks-fullstack/hyracks/hyracks-storage-am-rtree/src/main/java/org/apache/hyracks/storage/am/rtree/impls/RTreeSearchCursor.java
M hyracks-fullstack/hyracks/hyracks-storage-common/src/main/java/org/apache/hyracks/storage/common/IIndex.java
M hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-btree-test/src/test/java/org/apache/hyracks/storage/am/lsm/btree/multithread/LSMBTreeTestWorker.java
D hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/DummyTreeFactory.java
R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/component/TestLsmIndexFileManager.java
R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/LSMComponentFilterReferenceTest.java
R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/LSMIndexFileManagerTest.java
R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/VirtualBufferCacheTest.java
R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/VirtualFreePageManagerTest.java
M hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-rtree-test/src/test/java/org/apache/hyracks/storage/am/lsm/rtree/multithread/LSMRTreeTestWorker.java
M hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-rtree-test/src/test/java/org/apache/hyracks/storage/am/lsm/rtree/multithread/LSMRTreeWithAntiMatterTuplesTestWorker.java
76 files changed, 1,998 insertions(+), 2,835 deletions(-)


  git pull ssh://asterix-gerrit.ics.uci.edu:29418/asterixdb refs/changes/62/1762/3
-- 
To view, visit https://asterix-gerrit.ics.uci.edu/1762
To unsubscribe, visit https://asterix-gerrit.ics.uci.edu/settings

Gerrit-MessageType: newpatchset
Gerrit-Change-Id: I93fac0f27ab0b3cc071ff38aef90d850cbbce488
Gerrit-PatchSet: 3
Gerrit-Project: asterixdb
Gerrit-Branch: master
Gerrit-Owner: abdullah alamoudi <ba...@gmail.com>
Gerrit-Reviewer: Jenkins <je...@fulliautomatix.ics.uci.edu>
Gerrit-Reviewer: Murtadha Hubail <hu...@gmail.com>