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Posted to dev@ctakes.apache.org by "Bjarnadottir,Ragnhildur I" <ri...@ufl.edu> on 2017/06/30 15:10:58 UTC
Inquiry about using cTakes with sql
Good morning,
I am attempting to use cTakes for some NLP analysis on a corpus of clinical nursing progress notes. Currently I am only looking to use the core NLP pipeline. My data is in a MySQL database, do you have any documentation on using cTakes with MySQL or similar databases?
Thank you
Best,
Raga
[cid:image001.jpg@01D2F191.949684D0]
RE: Inquiry about using cTakes with sql [EXTERNAL]
Posted by "Mullane, Sean *HS" <SP...@hscmail.mcc.virginia.edu>.
I don't know about using only ctakes-core, but FWIW I have had success with using the YTEX classes to read from and write to a database. We are using MSSQL but from what I have seen I expect MySQL to work as well.
Sean
From: Finan, Sean [mailto:Sean.Finan@childrens.harvard.edu]
Sent: Friday, June 30, 2017 2:36 PM
To: dev@ctakes.apache.org
Subject: RE: Inquiry about using cTakes with sql [EXTERNAL]
Hi Raga,
The topic of grabbing data from a db has come up several times within the last six months or so. There are some classes in ctakes-core cr/ that deal with databases, but they are not documented and do require configuration for site-specific schema.
Is anybody out there familiar with them enough to write up a wiki page?
Thanks,
Sean
From: Bjarnadottir,Ragnhildur I [mailto:rib@ufl.edu]
Sent: Friday, June 30, 2017 11:11 AM
To: dev@ctakes.apache.org<ma...@ctakes.apache.org>
Subject: Inquiry about using cTakes with sql [EXTERNAL]
Good morning,
I am attempting to use cTakes for some NLP analysis on a corpus of clinical nursing progress notes. Currently I am only looking to use the core NLP pipeline. My data is in a MySQL database, do you have any documentation on using cTakes with MySQL or similar databases?
Thank you
Best,
Raga
[cid:image002.jpg@01D2F1AE.27609410]
RE: Inquiry about using cTakes with sql [EXTERNAL]
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Raga,
The topic of grabbing data from a db has come up several times within the last six months or so. There are some classes in ctakes-core cr/ that deal with databases, but they are not documented and do require configuration for site-specific schema.
Is anybody out there familiar with them enough to write up a wiki page?
Thanks,
Sean
From: Bjarnadottir,Ragnhildur I [mailto:rib@ufl.edu]
Sent: Friday, June 30, 2017 11:11 AM
To: dev@ctakes.apache.org
Subject: Inquiry about using cTakes with sql [EXTERNAL]
Good morning,
I am attempting to use cTakes for some NLP analysis on a corpus of clinical nursing progress notes. Currently I am only looking to use the core NLP pipeline. My data is in a MySQL database, do you have any documentation on using cTakes with MySQL or similar databases?
Thank you
Best,
Raga
[cid:image002.jpg@01D2F1AE.27609410]