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Posted to builds@beam.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2022/06/16 22:47:11 UTC
Build failed in Jenkins: beam_PreCommit_Python_PVR_Flink_Cron #2489
See <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/2489/display/redirect?page=changes>
Changes:
[noreply] Remove dataframe warnings from py38-docs logs (#21861)
[noreply] Update references to Jira to GH for the Java SDK (#21836)
[noreply] [21709] - Fix for "beam_PostCommit_Java_ValidatesRunner_Samza Failing"
[noreply] Update references to jira to GH for the Runners (#21835)
[noreply] Update remaining references to Jira to GH (#21834)
------------------------------------------
[...truncated 57.64 KB...]
github.com/apache/beam/sdks/v2/java/container,https://github.com/apache/beam/blob/sdks/v2.39.0/sdks/LICENSE,Apache-2.0
github.com/golang/protobuf,https://github.com/golang/protobuf/blob/v1.5.2/LICENSE,BSD-3-Clause
golang.org/x/net,https://cs.opensource.google/go/x/net/+/27dd8689:LICENSE,BSD-3-Clause
golang.org/x/sys,https://cs.opensource.google/go/x/sys/+/4e6760a1:LICENSE,BSD-3-Clause
golang.org/x/text,https://cs.opensource.google/go/x/text/+/v0.3.7:LICENSE,BSD-3-Clause
google.golang.org/genproto/googleapis/rpc/status,https://github.com/googleapis/go-genproto/blob/9aa15565e42a/LICENSE,Apache-2.0
google.golang.org/grpc,https://github.com/grpc/grpc-go/blob/v1.44.0/LICENSE,Apache-2.0
google.golang.org/protobuf,https://github.com/protocolbuffers/protobuf-go/blob/v1.27.1/LICENSE,BSD-3-Clause
+ chmod -R a+w /output/licenses
> Task :sdks:java:harness:shadowJar FROM-CACHE
> Task :sdks:python:test-suites:portable:py39:setupVirtualenv
Collecting protobuf<4.0dev,>=3.5.0.post1
Using cached protobuf-3.20.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.0 MB)
Collecting pyparsing!=3.0.5,>=2.0.2
Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Collecting platformdirs<3,>=2
Using cached platformdirs-2.5.2-py3-none-any.whl (14 kB)
> Task :sdks:java:extensions:sql:compileJava FROM-CACHE
> Task :sdks:java:extensions:sql:classes
> Task :sdks:java:extensions:sql:jar
> Task :sdks:java:extensions:sql:zetasql:compileJava FROM-CACHE
> Task :sdks:java:extensions:sql:zetasql:classes UP-TO-DATE
> Task :sdks:java:extensions:sql:zetasql:jar
> Task :sdks:java:extensions:sql:expansion-service:compileJava FROM-CACHE
> Task :sdks:java:extensions:sql:expansion-service:classes UP-TO-DATE
> Task :sdks:java:extensions:sql:expansion-service:jar
> Task :sdks:java:container:java8:copyDockerfileDependencies
> Task :sdks:python:test-suites:portable:py39:setupVirtualenv
Installing collected packages: distlib, wheel, toml, six, setuptools, pyparsing, py, protobuf, pluggy, platformdirs, filelock, virtualenv, packaging, mypy-protobuf, grpcio, tox, grpcio-tools
Attempting uninstall: setuptools
Found existing installation: setuptools 58.1.0
Uninstalling setuptools-58.1.0:
Successfully uninstalled setuptools-58.1.0
Successfully installed distlib-0.3.1 filelock-3.7.1 grpcio-1.46.3 grpcio-tools-1.37.0 mypy-protobuf-1.18 packaging-21.3 platformdirs-2.5.2 pluggy-1.0.0 protobuf-3.20.1 py-1.11.0 pyparsing-3.0.9 setuptools-62.4.0 six-1.16.0 toml-0.10.2 tox-3.20.1 virtualenv-20.14.1 wheel-0.37.1
> Task :release:go-licenses:java:createLicenses
> Task :sdks:java:container:java8:copyGolangLicenses
> Task :sdks:java:container:pullLicenses
Collecting pip
Using cached pip-22.1.2-py3-none-any.whl (2.1 MB)
Collecting setuptools
Using cached setuptools-62.4.0-py3-none-any.whl (1.2 MB)
Collecting wheel
Using cached wheel-0.37.1-py2.py3-none-any.whl (35 kB)
Installing collected packages: pip, setuptools, wheel
Attempting uninstall: pip
Found existing installation: pip 20.0.2
Uninstalling pip-20.0.2:
Successfully uninstalled pip-20.0.2
Attempting uninstall: setuptools
Found existing installation: setuptools 44.0.0
Uninstalling setuptools-44.0.0:
Successfully uninstalled setuptools-44.0.0
Successfully installed pip-22.1.2 setuptools-62.4.0 wheel-0.37.1
Collecting beautifulsoup4<5.0,>=4.9.0
Using cached beautifulsoup4-4.11.1-py3-none-any.whl (128 kB)
Collecting pyyaml<6.0.0,>=3.12
Using cached PyYAML-5.4.1-cp38-cp38-manylinux1_x86_64.whl (662 kB)
Collecting tenacity<6.0,>=5.0.2
Using cached tenacity-5.1.5-py2.py3-none-any.whl (34 kB)
Collecting soupsieve>1.2
Using cached soupsieve-2.3.2.post1-py3-none-any.whl (37 kB)
Collecting six>=1.9.0
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: soupsieve, six, pyyaml, tenacity, beautifulsoup4
Successfully installed beautifulsoup4-4.11.1 pyyaml-5.4.1 six-1.16.0 soupsieve-2.3.2.post1 tenacity-5.1.5
Executing python <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/license_scripts/pull_licenses_java.py> --license_index=<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/build/reports/dependency-license/index.json> --output_dir=<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/build/target/java_third_party_licenses> --dep_url_yaml=<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/license_scripts/dep_urls_java.yaml> --manual_license_path=<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/license_scripts/manual_licenses>
INFO:root:Pulling license for 242 dependencies using 16 threads.
> Task :sdks:python:sdist
org/apache/beam/model/interactive/v1/beam_interactive_api.proto:36:1: warning: Import google/protobuf/timestamp.proto is unused.
Writing mypy to org/apache/beam/model/pipeline/v1/external_transforms_pb2.pyi
Writing mypy to org/apache/beam/model/pipeline/v1/beam_runner_api_pb2.pyi
Writing mypy to org/apache/beam/model/pipeline/v1/standard_window_fns_pb2.pyi
Writing mypy to org/apache/beam/model/pipeline/v1/metrics_pb2.pyi
Writing mypy to org/apache/beam/model/pipeline/v1/endpoints_pb2.pyi
Writing mypy to org/apache/beam/model/pipeline/v1/schema_pb2.pyi
Writing mypy to org/apache/beam/model/job_management/v1/beam_artifact_api_pb2.pyi
Writing mypy to org/apache/beam/model/job_management/v1/beam_expansion_api_pb2.pyi
Writing mypy to org/apache/beam/model/job_management/v1/beam_job_api_pb2.pyi
Writing mypy to org/apache/beam/model/fn_execution/v1/beam_provision_api_pb2.pyi
Writing mypy to org/apache/beam/model/fn_execution/v1/beam_fn_api_pb2.pyi
Writing mypy to org/apache/beam/model/interactive/v1/beam_interactive_api_pb2.pyi
<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/build/gradleenv/1922375555/lib/python3.8/site-packages/setuptools/dist.py>:531: UserWarning: Normalizing '2.41.0.dev' to '2.41.0.dev0'
warnings.warn(tmpl.format(**locals()))
warning: no files found matching 'README.md'
warning: no files found matching 'NOTICE'
warning: no files found matching 'LICENSE'
warning: no files found matching 'LICENSE.python'
warning: sdist: standard file not found: should have one of README, README.rst, README.txt, README.md
> Task :sdks:java:container:pullLicenses
INFO:root:Replaced local file URL with file://<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/license_scripts/manual_licenses/xz/COPYING> for xz-1.5
> Task :runners:flink:1.15:compileJava
> Task :sdks:java:extensions:sql:expansion-service:shadowJar
> Task :sdks:java:container:pullLicenses
INFO:root:pull_licenses_java.py succeed. It took 10.79551 seconds with 16 threads.
Copying licenses from <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/build/target/java_third_party_licenses> to <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/build/target/third_party_licenses.>
Finished license_scripts.sh
> Task :sdks:java:container:goPrepare UP-TO-DATE
> Task :sdks:java:container:java8:copyJavaThirdPartyLicenses
> Task :sdks:java:container:goBuild
/home/jenkins/go/bin/go1.18.1 build -o ./build/target/linux_amd64/boot boot.go boot_test.go
> Task :sdks:java:container:java8:copySdkHarnessLauncher
Execution optimizations have been disabled for task ':sdks:java:container:java8:copySdkHarnessLauncher' to ensure correctness due to the following reasons:
- Gradle detected a problem with the following location: '<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/build/target'.> Reason: Task ':sdks:java:container:java8:copySdkHarnessLauncher' uses this output of task ':sdks:java:container:downloadCloudProfilerAgent' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4/userguide/validation_problems.html#implicit_dependency for more details about this problem.
- Gradle detected a problem with the following location: '<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/java/container/build/target'.> Reason: Task ':sdks:java:container:java8:copySdkHarnessLauncher' uses this output of task ':sdks:java:container:pullLicenses' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4/userguide/validation_problems.html#implicit_dependency for more details about this problem.
> Task :sdks:java:container:java8:dockerPrepare
> Task :sdks:java:container:java8:docker
> Task :runners:flink:1.15:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
> Task :runners:flink:1.15:classes
> Task :runners:flink:1.15:jar
> Task :runners:flink:1.15:job-server:compileJava NO-SOURCE
> Task :runners:flink:1.15:job-server:classes UP-TO-DATE
> Task :runners:flink:1.15:job-server:shadowJar
> Task :sdks:python:test-suites:portable:py39:flinkCompatibilityMatrixLOOPBACK
[1mflink-runner-test create: <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/target/.tox-flink-runner-test/flink-runner-test>
[0m[1mflink-runner-test installdeps: -rbuild-requirements.txt
[0m[1mflink-runner-test inst: <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/target/.tox-flink-runner-test/.tmp/package/1/apache-beam.tar.gz>
[0m[1mflink-runner-test installed: apache-beam @ file://<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/target/.tox-flink-runner-test/.tmp/package/1/apache-beam.tar.gz,atomicwrites==1.4.0,attrs==21.4.0,certifi==2022.6.15,cffi==1.15.0,charset-normalizer==2.0.12,cloudpickle==2.1.0,crcmod==1.7,cryptography==37.0.2,deprecation==2.1.0,dill==0.3.1.1,distlib==0.3.1,docker==5.0.3,docopt==0.6.2,execnet==1.9.0,fastavro==1.5.1,freezegun==1.2.1,greenlet==1.1.2,grpcio==1.46.3,grpcio-tools==1.37.0,hdfs==2.7.0,httplib2==0.20.4,idna==3.3,joblib==1.1.0,mock==2.0.0,more-itertools==8.13.0,mypy-protobuf==1.18,numpy==1.22.4,orjson==3.7.2,packaging==21.3,pandas==1.4.2,parameterized==0.7.5,pbr==5.9.0,pluggy==0.13.1,proto-plus==1.20.6,protobuf==3.20.1,psycopg2-binary==2.9.3,py==1.11.0,pyarrow==7.0.0,pycparser==2.21,pydot==1.4.2,PyHamcrest==1.10.1,pymongo==3.12.3,PyMySQL==1.0.2,pyparsing==3.0.9,pytest==4.6.11,pytest-forked==1.4.0,pytest-timeout==1.4.2,pytest-xdist==1.34.0,python-dateutil==2.8.2,pytz==2022.1,PyYAML==6.0,requests==2.28.0,requests-mock==1.9.3,scikit-learn==1.1.1,scipy==1.8.1,six==1.16.0,SQLAlchemy==1.4.37,tenacity==5.1.5,testcontainers==3.6.0,threadpoolctl==3.1.0,typing_extensions==4.2.0,urllib3==1.26.9,wcwidth==0.2.5,websocket-client==1.3.2,wrapt==1.14.1>
[0m[1mflink-runner-test run-test-pre: PYTHONHASHSEED='35844111'
[0m[1mflink-runner-test run-test-pre: commands[0] | python --version
[0mPython 3.9.10
[1mflink-runner-test run-test-pre: commands[1] | pip --version
[0mpip 22.1.2 from <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/target/.tox-flink-runner-test/flink-runner-test/lib/python3.9/site-packages/pip> (python 3.9)
[1mflink-runner-test run-test-pre: commands[2] | pip check
[0mNo broken requirements found.
[1mflink-runner-test run-test-pre: commands[3] | bash <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/scripts/run_tox_cleanup.sh>
[0m[1mflink-runner-test run-test: commands[0] | <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/scripts/pytest_validates_runner.sh> flink-runner-test <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/apache_beam/runners/portability/flink_runner_test.py> '--flink_job_server_jar=<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/runners/flink/1.15/job-server/build/libs/beam-runners-flink-1.15-job-server-2.41.0-SNAPSHOT.jar> --environment_type=LOOPBACK'
[0m============================= test session starts ==============================
platform linux -- Python 3.9.10, pytest-4.6.11, py-1.11.0, pluggy-0.13.1
cachedir: target/.tox-flink-runner-test/flink-runner-test/.pytest_cache
rootdir: <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python,> inifile: pytest.ini
plugins: xdist-1.34.0, timeout-1.4.2, forked-1.4.0, requests-mock-1.9.3
timeout: 600.0s
timeout method: signal
timeout func_only: False
collected 207 items
apache_beam/runners/portability/flink_runner_test.py ......s...s...ss... [ 9%]
.........s....s...s..s............s..ss.....ss.s........s...s...ss...sss [ 43%]
......s....s...s..s............s..ss.....ssss..F.....s...s...ss......... [ 78%]
...s....s...s..s............s..ss.....ss.s.. [100%]
=================================== FAILURES ===================================
__________________ FlinkRunnerTestStreaming.test_assert_that ___________________
RuntimeError: Pipeline timed out waiting for job service subprocess.
During handling of the above exception, another exception occurred:
self = <apache_beam.runners.portability.flink_runner_test.FlinkRunnerTestStreaming testMethod=test_assert_that>
def test_assert_that(self):
# TODO: figure out a way for fn_api_runner to parse and raise the
# underlying exception.
with self.assertRaisesRegex(Exception, 'Failed assert'):
with self.create_pipeline() as p:
> assert_that(p | beam.Create(['a', 'b']), equal_to(['a']))
E AssertionError: "Failed assert" does not match "Pipeline timed out waiting for job service subprocess."
apache_beam/runners/portability/fn_api_runner/fn_runner_test.py:113: AssertionError
----------------------------- Captured stderr call -----------------------------
Jun 16, 2022 10:35:02 PM software.amazon.awssdk.regions.internal.util.EC2MetadataUtils getItems
WARNING: Unable to retrieve the requested metadata.
Jun 16, 2022 10:35:03 PM org.apache.beam.runners.jobsubmission.JobServerDriver createArtifactStagingService
INFO: ArtifactStagingService started on localhost:38781
Jun 16, 2022 10:35:03 PM org.apache.beam.runners.jobsubmission.JobServerDriver createExpansionService
INFO: Java ExpansionService started on localhost:43133
Jun 16, 2022 10:35:03 PM org.apache.beam.runners.jobsubmission.JobServerDriver createJobServer
INFO: JobService started on localhost:49931
Jun 16, 2022 10:35:03 PM org.apache.beam.runners.jobsubmission.JobServerDriver run
INFO: Job server now running, terminate with Ctrl+C
=============================== warnings summary ===============================
target/.tox-flink-runner-test/flink-runner-test/lib/python3.9/site-packages/tenacity/_asyncio.py:42
<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/target/.tox-flink-runner-test/flink-runner-test/lib/python3.9/site-packages/tenacity/_asyncio.py>:42: DeprecationWarning: "@coroutine" decorator is deprecated since Python 3.8, use "async def" instead
def call(self, fn, *args, **kwargs):
apache_beam/runners/portability/flink_runner_test.py::FlinkRunnerTest::test_element_to_batch_pardo
apache_beam/runners/portability/flink_runner_test.py::FlinkRunnerTestOptimized::test_element_to_batch_pardo
apache_beam/runners/portability/flink_runner_test.py::FlinkRunnerTestStreaming::test_element_to_batch_pardo
<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/apache_beam/runners/worker/operations.py>:352: InefficientExecutionWarning: Input to operation <DoOperation ParDo(ArrayMultiplyDoFn) output_tags=['None'], receivers=[GeneralPurposeConsumerSet[ParDo(ArrayMultiplyDoFn).out0, coder=WindowedValueCoder[FastPrimitivesCoder], len(consumers)=1]]> must be rebatched from type NumpyArray[dtype('int64')] to NumpyArray[dtype('O')].
This is very inefficient, consider re-structuring your pipeline or adding a DoFn to directly convert between these types.
warnings.warn(
apache_beam/runners/portability/flink_runner_test.py::FlinkRunnerTest::test_element_to_batch_pardo
apache_beam/runners/portability/flink_runner_test.py::FlinkRunnerTestOptimized::test_element_to_batch_pardo
apache_beam/runners/portability/flink_runner_test.py::FlinkRunnerTestStreaming::test_element_to_batch_pardo
<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/apache_beam/runners/common.py>:1701: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
self.main_receivers.receive_batch(windowed_batch)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
- generated xml file: <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/pytest_flink-runner-test.xml> -
======= 1 failed, 160 passed, 46 skipped, 7 warnings in 2023.66 seconds ========
[31mERROR: InvocationError for command <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/scripts/pytest_validates_runner.sh> flink-runner-test apache_beam/runners/portability/flink_runner_test.py '--flink_job_server_jar=<https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/runners/flink/1.15/job-server/build/libs/beam-runners-flink-1.15-job-server-2.41.0-SNAPSHOT.jar> --environment_type=LOOPBACK' (exited with code 1)
[0m[1mflink-runner-test run-test-post: commands[0] | bash <https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/ws/src/sdks/python/test-suites/portable/py39/build/srcs/sdks/python/scripts/run_tox_cleanup.sh>
[0m___________________________________ summary ____________________________________
[31mERROR: flink-runner-test: commands failed
[0m
> Task :sdks:python:test-suites:portable:py39:flinkCompatibilityMatrixLOOPBACK FAILED
FAILURE: Build failed with an exception.
* What went wrong:
Execution failed for task ':sdks:python:test-suites:portable:py39:flinkCompatibilityMatrixLOOPBACK'.
> Process 'command 'sh'' finished with non-zero exit value 1
* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.
* Get more help at https://help.gradle.org
Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
See https://docs.gradle.org/7.4/userguide/command_line_interface.html#sec:command_line_warnings
Execution optimizations have been disabled for 1 invalid unit(s) of work during this build to ensure correctness.
Please consult deprecation warnings for more details.
BUILD FAILED in 44m 6s
147 actionable tasks: 101 executed, 42 from cache, 4 up-to-date
Publishing build scan...
https://gradle.com/s/a3g5gxaretn6q
Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure
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