[jira] [Created] (ARROW-14555) install.packages("arrow") fails on docker image rocker/r-ver:4.0.2

["Daniel Teske (Jira)" <ji...@apache.org>]

Daniel Teske created ARROW-14555:
------------------------------------

             Summary: install.packages("arrow") fails on docker image rocker/r-ver:4.0.2
                 Key: ARROW-14555
                 URL: https://issues.apache.org/jira/browse/ARROW-14555
             Project: Apache Arrow
          Issue Type: Bug
          Components: R
    Affects Versions: 6.0.0
            Reporter: Daniel Teske
         Attachments: complete-output.log

Since last week we cannot build our R environment because the the arrow lib fails on

 

 
{code:java}
install.packages("arrow"){code}
We use the rocker/r-vers:4.0.2 as our base image. It seems that it's possible to install arrow on Windows an Mac, but not on Linux.

The effected part of the Dockerimage is the following:
{code:java}
FROM rocker/r-ver:4.0.2 AS builder
RUN apt-get update && apt-get install -y \
    git-core \
    libcurl4-openssl-dev \
    libgit2-dev \
    libglpk-dev \
    libgmp-dev \
    libicu-dev \
    libssh2-1-dev \
    libssl-dev \
    libxml2-dev \
    make pandoc pandoc-citeproc zlib1g-dev && rm -rf /var/lib/apt/lists/*

RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site
RUN R -e 'install.packages("remotes")'
RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")'

# copy the setup script, run it, then delete it
COPY dependencies/setup.R /
RUN Rscript setup.R && rm setup.R
{code}
the dependencies/setup.R script contains 
{code:java}
install.packages(
  c(
    "arrow"
  ),
  quiet = FALSE,
  verbose = TRUE
)

arrow::install_arrow()
{code}
I attached the whole log output, but the interesting Part ist the following:
{code:java}
#12 55.88 * installing *source* package ‘arrow’ ...
#12 55.96 ** package ‘arrow’ successfully unpacked and MD5 sums checked
#12 55.96 ** using staged installation
#12 56.46 *** Found local C++ source: 'tools/cpp'
#12 56.46 *** Building C++ libraries
#12 56.53 **** cmake
#12 62.22 **** arrow  
#12 663.6 **** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information. 
#12 665.3 ------------------------- NOTE ---------------------------
#12 665.3 There was an issue preparing the Arrow C++ libraries.
#12 665.3 See https://arrow.apache.org/docs/r/articles/install.html
#12 665.3 ---------------------------------------------------------
#12 665.5 ERROR: configuration failed for package ‘arrow’
#12 665.5 * removing ‘/usr/local/lib/R/site-library/arrow’
#12 666.0 
#12 666.0 The downloaded source packages are in
#12 666.0       ‘/tmp/RtmpDWxSqL/downloaded_packages’
#12 666.0 Warning message:
#12 666.0 In install.packages(c("arrow"), quiet = FALSE, verbose = TRUE) :
#12 666.0   installation of package ‘arrow’ had non-zero exit status
#12 666.1 Error in loadNamespace(name) : there is no package called ‘arrow’
#12 666.1 Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
#12 666.1 Execution halted
------
executor failed running [/bin/sh -c Rscript setup.R && rm setup.R]: exit code: 1
{code}
 



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