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Posted to reviews@spark.apache.org by GitBox <gi...@apache.org> on 2021/09/01 08:03:37 UTC

[GitHub] [spark] HyukjinKwon opened a new pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

HyukjinKwon opened a new pull request #33887:
URL: https://github.com/apache/spark/pull/33887


   ### What changes were proposed in this pull request?
   
   This PR proposes to ask users if they want to download and install SparkR when they install SparkR from CRAN.
   
   `SPARKR_ASK_INSTALLATION` environment variable was added in case other notebook projects are affected.
   
   ### Why are the changes needed?
   
   This is required for CRAN. Currently SparkR is removed: https://cran.r-project.org/web/packages/SparkR/index.html.
   See also https://lists.apache.org/thread.html/r02b9046273a518e347dfe85f864d23d63d3502c6c1edd33df17a3b86%40%3Cdev.spark.apache.org%3E
   
   ### Does this PR introduce _any_ user-facing change?
   
   Yes, `sparkR.session(...)` will ask if users want to download and install Spark package or not if they are in the plain R shall or `Rscript`.
   
   ### How was this patch tested?
   
   Manually tested as below:
   **R**
   
   Valid input (`n`):
   
   ```
   > sparkR.session(master="local")
   Spark not found in SPARK_HOME:
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): n
   ```
   ```
   Error in sparkCheckInstall(sparkHome, master, deployMode) :
     Please make sure Spark package is installed in this machine.
   - If there is one, set the path in sparkHome parameter or environment variable SPARK_HOME.
   - If not, you may run install.spark function to do the job.
   ```
   
   Invalid input:
   
   ```
   > sparkR.session(master="local")
   Spark not found in SPARK_HOME:
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): abc
   ```
   ```
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n):
   ```
   
   Valid input (`y`):
   
   ```
   > sparkR.session(master="local")
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): y
   Spark not found in the cache directory. Installation will start.
   MirrorUrl not provided.
   Looking for preferred site from apache website...
   Preferred mirror site found: https://ftp.riken.jp/net/apache/spark
   Downloading spark-3.3.0 for Hadoop 2.7 from:
   - https://ftp.riken.jp/net/apache/spark/spark-3.3.0/spark-3.3.0-bin-hadoop2.7.tgz
   trying URL 'https://ftp.riken.jp/net/apache/spark/spark-3.3.0/spark-3.3.0-bin-hadoop2.7.tgz'
   ...
   ```
   
   
   **Rscript**
   
   ```
   cat tmp.R
   ```
   ```
   library(SparkR, lib.loc = c(file.path(".", "R", "lib")))
   sparkR.session(master="local")
   ```
   
   ```
   Rscript tmp.R
   ```
   
   Valid input (`n`):
   
   ```
   Spark not found in SPARK_HOME:
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): n
   ```
   ```
   Error in sparkCheckInstall(sparkHome, master, deployMode) :
     Please make sure Spark package is installed in this machine.
   - If there is one, set the path in sparkHome parameter or environment variable SPARK_HOME.
   - If not, you may run install.spark function to do the job.
   Calls: sparkR.session -> sparkCheckInstall
   ```
   
   Invalid input:
   
   ```
   Spark not found in SPARK_HOME:
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n): abc
   ```
   ```
   Will you download and install (or reuse if it exists) Spark package under the cache [/.../Caches/spark]? (y/n):
   ```
   
   Valid input (`y`):
   
   ```
   ...
   Spark not found in SPARK_HOME:
   Will you download and install (or reuse if it exists) Spark package under the cache [/Users/hyukjin.kwon/Library/Caches/spark]? (y/n): y
   Spark not found in the cache directory. Installation will start.
   MirrorUrl not provided.
   Looking for preferred site from apache website...
   Preferred mirror site found: https://ftp.riken.jp/net/apache/spark
   Downloading spark-3.3.0 for Hadoop 2.7 from:
   ...
   ```
   
   `bin/sparkR` and `bin/spark-submit *.R` are not affected (tested).
   
   


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[GitHub] [spark] AmplabJenkins removed a comment on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
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[GitHub] [spark] felixcheung commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
felixcheung commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910971326


   I’d collapse this
   
             if (interactive()) {
               answer <- readline(prompt = msg)
             } else {
               cat(msg)
               answer <- readLines("stdin", n = 1)
             }
             while (answer != "y" && answer != "n") {
               if (interactive()) {
                 answer <- readline(prompt = msg)
               } else {
                 cat(msg)
                 answer <- readLines("stdin", n = 1)
               }
             }
   
   
   To
   
   
             answer <- NA
             while (answer != "y" && answer != "n") {
               if (interactive()) {
                 answer <- readline(prompt = msg)
               } else {
                 cat(msg)
                 answer <- readLines("stdin", n = 1)
               }
             }
   
   
   


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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910081625


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Posted by GitBox <gi...@apache.org>.
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URL: https://github.com/apache/spark/pull/33887#issuecomment-910046477






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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910046477


   **[Test build #142910 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/142910/testReport)** for PR 33887 at commit [`f232f1a`](https://github.com/apache/spark/commit/f232f1aa476bb5b8d8efff24e5cf51cfdc635029).


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Posted by GitBox <gi...@apache.org>.
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URL: https://github.com/apache/spark/pull/33887#issuecomment-910090020






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[GitHub] [spark] shivaram commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
shivaram commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910828847


   Thanks @HyukjinKwon for making the change


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[GitHub] [spark] HyukjinKwon commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910041027


   cc @felixcheung @shivaram @gengliangwang @dongjoon-hyun FYI


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[GitHub] [spark] HyukjinKwon commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910041027


   cc @felixcheung @shivaram @gengliangwang @dongjoon-hyun FYI


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[GitHub] [spark] HyukjinKwon commented on a change in pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on a change in pull request #33887:
URL: https://github.com/apache/spark/pull/33887#discussion_r699980663



##########
File path: R/pkg/R/sparkR.R
##########
@@ -655,6 +655,45 @@ sparkCheckInstall <- function(sparkHome, master, deployMode) {
     } else {
       if (interactive() || isMasterLocal(master)) {
         message("Spark not found in SPARK_HOME: ", sparkHome)
+        # If EXISTING_SPARKR_BACKEND_PORT environment variable is set, assume
+        # that we're in Spark submit. spark-submit always sets Spark home
+        # so this case should not happen. This is just a safeguard.
+        isSparkRSubmit <- Sys.getenv("EXISTING_SPARKR_BACKEND_PORT", "") != ""

Review comment:
       This is the same way as above:
   https://github.com/apache/spark/blob/0494dc90af48ce7da0625485a4dc6917a244d580/R/pkg/R/sparkR.R#L153-L155




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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910052037


   **[Test build #142912 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/142912/testReport)** for PR 33887 at commit [`96730f1`](https://github.com/apache/spark/commit/96730f106ae7f5228e3426f2f8f495a4ec67afff).


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[GitHub] [spark] HyukjinKwon closed pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon closed pull request #33887:
URL: https://github.com/apache/spark/pull/33887


   


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[GitHub] [spark] SparkQA removed a comment on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
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[GitHub] [spark] felixcheung commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
felixcheung commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-911151875


   LGTM. Thanks, as always
   


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[GitHub] [spark] HyukjinKwon commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-911053498


   AppVeyor already passed at https://ci.appveyor.com/project/ApacheSoftwareFoundation/spark/builds/40602983. It's failed in the latest commit due to flakiness.


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Posted by GitBox <gi...@apache.org>.
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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910077846


   **[Test build #142912 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/142912/testReport)** for PR 33887 at commit [`96730f1`](https://github.com/apache/spark/commit/96730f106ae7f5228e3426f2f8f495a4ec67afff).
    * This patch passes all tests.
    * This patch merges cleanly.
    * This patch adds no public classes.


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[GitHub] [spark] HyukjinKwon commented on a change in pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on a change in pull request #33887:
URL: https://github.com/apache/spark/pull/33887#discussion_r699980663



##########
File path: R/pkg/R/sparkR.R
##########
@@ -655,6 +655,45 @@ sparkCheckInstall <- function(sparkHome, master, deployMode) {
     } else {
       if (interactive() || isMasterLocal(master)) {
         message("Spark not found in SPARK_HOME: ", sparkHome)
+        # If EXISTING_SPARKR_BACKEND_PORT environment variable is set, assume
+        # that we're in Spark submit. spark-submit always sets Spark home
+        # so this case should not happen. This is just a safeguard.
+        isSparkRSubmit <- Sys.getenv("EXISTING_SPARKR_BACKEND_PORT", "") != ""

Review comment:
       This is the same way as above:
   https://github.com/apache/spark/blob/0494dc90af48ce7da0625485a4dc6917a244d580/R/pkg/R/sparkR.R#L153-L155




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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910072263


   **[Test build #142910 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/142910/testReport)** for PR 33887 at commit [`f232f1a`](https://github.com/apache/spark/commit/f232f1aa476bb5b8d8efff24e5cf51cfdc635029).
    * This patch passes all tests.
    * This patch merges cleanly.
    * This patch adds no public classes.


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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

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SparkQA removed a comment on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910052037


   **[Test build #142912 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/142912/testReport)** for PR 33887 at commit [`96730f1`](https://github.com/apache/spark/commit/96730f106ae7f5228e3426f2f8f495a4ec67afff).


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[GitHub] [spark] HyukjinKwon commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-911153371


   Thanks guys.
   
   Merged to master and branch-3.2.


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[GitHub] [spark] SparkQA commented on pull request #33887: [SPARK-36631][R] Ask users if they want to download and install SparkR in non Spark scripts

Posted by GitBox <gi...@apache.org>.
SparkQA commented on pull request #33887:
URL: https://github.com/apache/spark/pull/33887#issuecomment-910046477






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