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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2013/07/18 23:44:50 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #351
See <https://builds.apache.org/job/ctakes-trunk-compiletest/351/changes>
Changes:
[mattcoarr] removed jcarafe-ext as it's not needed and it was causing depdency problems
CTAKES-76 and CTAKES-108
[mattcoarr] removed system dependencies (for the assertion module) from the two profiles for running CPE and CVD
as per Steve Bethard's comments on CTAKES-76
------------------------------------------
[...truncated 5789 lines...]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-assertion-zoner ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-assertion-zoner ---
[INFO] [INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion-zoner/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion-zoner/src/main/resources/org/apache/ctakes/assertion/zoner/types/TypeSystem.xml'.>
[INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Heading'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Heading_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Subzone'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Subzone_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Zone'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.assertion.zoner.types.Zone_Type'.
[INFO] --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-assertion-zoner ---
[INFO] [INFO] Compiling 6 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion-zoner/target/classes>
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-assertion-zoner ---
[debug] execute contextualize
[INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion-zoner/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-assertion-zoner ---
[INFO] [INFO] No sources to compile
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-assertion-zoner ---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion-zoner/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-assertion-zoner ---
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Assertion 3.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://repo.maven.apache.org/maven2/net/sf/carafe/jcarafe/jcarafe-core_2.9.1/0.9.8.3.RC4/jcarafe-core_2.9.1-0.9.8.3.RC4.pom
Downloaded: http://repo.maven.apache.org/maven2/net/sf/carafe/jcarafe/jcarafe-core_2.9.1/0.9.8.3.RC4/jcarafe-core_2.9.1-0.9.8.3.RC4.pom (3 KB at 10.8 KB/sec)
Downloading: http://repo.maven.apache.org/maven2/net/sf/mastif/mastif-i2b2/1.4/mastif-i2b2-1.4.pom
Downloaded: http://repo.maven.apache.org/maven2/net/sf/mastif/mastif-i2b2/1.4/mastif-i2b2-1.4.pom (7 KB at 31.7 KB/sec)
Downloading: http://repo.maven.apache.org/maven2/net/sf/carafe/jcarafe/jcarafe-ext_2.9.1/0.9.8.3.RC4/jcarafe-ext_2.9.1-0.9.8.3.RC4.pom
Downloaded: http://repo.maven.apache.org/maven2/net/sf/carafe/jcarafe/jcarafe-ext_2.9.1/0.9.8.3.RC4/jcarafe-ext_2.9.1-0.9.8.3.RC4.pom (3 KB at 13.4 KB/sec)
Downloading: http://repo.maven.apache.org/maven2/org/mitre/jcarafe-core_2.9.1/0.9.8.2/jcarafe-core_2.9.1-0.9.8.2.pom
Downloading: http://scala-tools.org/repo-snapshots/org/mitre/jcarafe-core_2.9.1/0.9.8.2/jcarafe-core_2.9.1-0.9.8.2.pom
Downloading: http://rcf.mitre.org/project/chatter/repo/org/mitre/jcarafe-core_2.9.1/0.9.8.2/jcarafe-core_2.9.1-0.9.8.2.pom
Downloading: http://scala-tools.org/repo-releases/org/mitre/jcarafe-core_2.9.1/0.9.8.2/jcarafe-core_2.9.1-0.9.8.2.pom
Downloading: http://repo.maven.apache.org/maven2/net/sf/trove4j/trove4j/3.0.2/trove4j-3.0.2.pom
Downloaded: http://repo.maven.apache.org/maven2/net/sf/trove4j/trove4j/3.0.2/trove4j-3.0.2.pom (2 KB at 128.0 KB/sec)
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [16.622s]
[INFO] Apache cTAKES common type system .................. SUCCESS [11.786s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.895s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.029s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.241s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.031s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [9.727s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.936s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.635s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [4.855s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [2.011s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [20.624s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.633s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1.437s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.298s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.359s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.152s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [4.767s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.025s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [3.277s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.364s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [15.101s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [40.821s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.064s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.295s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.706s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.011s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [2.309s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [9.447s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [2.131s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.185s]
[INFO] Apache cTAKES Resources pad-term-spotter-res ...... SUCCESS [1.795s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [7.096s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.441s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.511s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [3.093s]
[INFO] Apache cTAKES Assertion ........................... FAILURE [1.562s]
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4:17.886s
[INFO] Finished at: Thu Jul 18 21:44:35 UTC 2013
[INFO] Final Memory: 35M/153M
[INFO] ------------------------------------------------------------------------
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mavenExecutionResult exceptions not empty
message : Failed to execute goal on project ctakes-assertion: Could not resolve dependencies for project org.apache.ctakes:ctakes-assertion:jar:3.1.0-SNAPSHOT: Failed to collect dependencies for [org.apache.ctakes:ctakes-assertion-res:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-assertion-zoner:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-type-system:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-core:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-constituency-parser:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-utils:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-pos-tagger:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dependency-parser:jar:3.1.0-SNAPSHOT (compile), org.cleartk:cleartk-ml:jar:1.3.0 (compile), org.cleartk:cleartk-ml-libsvm:jar:1.2.0 (compile), org.cleartk:cleartk-ml-opennlp-maxent:jar:1.1.2 (compile), org.cleartk:cleartk-util:jar:0.9.2 (compile), org.cleartk:cleartk-eval:jar:0.9.2 (compile), args4j:args4j:jar:2.0.16 (compile), commons-io:commons-io:jar:2.0.1 (compile), commons-lang:commons-lang:jar:2.4 (compile), commons-logging:commons-logging:jar:1.1.1 (compile), com.google.guava:guava:jar:10.0 (compile), commons-cli:commons-cli:jar:1.2 (compile), com.carrotsearch:hppc:jar:0.4.1 (compile), jdom:jdom:jar:1.0 (compile), junit:junit:jar:[4.10,4.10] (test), log4j:log4j:jar:1.2.16 (compile), org.apache.opennlp:opennlp-maxent:jar:3.0.2-incubating (compile), org.apache.opennlp:opennlp-tools:jar:1.5.2-incubating (compile), org.apache.lucene:lucene-core:jar:4.0.0 (compile), tw.edu.ntu.csie:libsvm:jar:3.1 (compile), org.springframework:spring-core:jar:3.1.2.RELEASE (compile), org.uimafit:uimafit:jar:1.4.0 (compile), org.codehaus.jackson:jackson-core-asl:jar:1.5.0 (compile), org.codehaus.jackson:jackson-mapper-asl:jar:1.5.0 (compile), org.scala-lang:scala-library:jar:2.9.0 (compile), org.scala-tools.sbinary:sbinary_2.9.0:jar:0.4.0 (compile), net.sf.carafe.jcarafe:jcarafe-core_2.9.1:jar:0.9.8.3.RC4 (compile), net.sf.mastif:mastif-i2b2:jar:1.4 (compile), net.sf.mastif:mastif-zoner:jar:1.4 (compile), org.apache.ctakes:ctakes-lvg:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-chunker:jar:3.1.0-SNAPSHOT (compile)]
cause : Could not resolve dependencies for project org.apache.ctakes:ctakes-assertion:jar:3.1.0-SNAPSHOT: Failed to collect dependencies for [org.apache.ctakes:ctakes-assertion-res:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-assertion-zoner:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-type-system:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-core:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-constituency-parser:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-utils:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-pos-tagger:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dependency-parser:jar:3.1.0-SNAPSHOT (compile), org.cleartk:cleartk-ml:jar:1.3.0 (compile), org.cleartk:cleartk-ml-libsvm:jar:1.2.0 (compile), org.cleartk:cleartk-ml-opennlp-maxent:jar:1.1.2 (compile), org.cleartk:cleartk-util:jar:0.9.2 (compile), org.cleartk:cleartk-eval:jar:0.9.2 (compile), args4j:args4j:jar:2.0.16 (compile), commons-io:commons-io:jar:2.0.1 (compile), commons-lang:commons-lang:jar:2.4 (compile), commons-logging:commons-logging:jar:1.1.1 (compile), com.google.guava:guava:jar:10.0 (compile), commons-cli:commons-cli:jar:1.2 (compile), com.carrotsearch:hppc:jar:0.4.1 (compile), jdom:jdom:jar:1.0 (compile), junit:junit:jar:[4.10,4.10] (test), log4j:log4j:jar:1.2.16 (compile), org.apache.opennlp:opennlp-maxent:jar:3.0.2-incubating (compile), org.apache.opennlp:opennlp-tools:jar:1.5.2-incubating (compile), org.apache.lucene:lucene-core:jar:4.0.0 (compile), tw.edu.ntu.csie:libsvm:jar:3.1 (compile), org.springframework:spring-core:jar:3.1.2.RELEASE (compile), org.uimafit:uimafit:jar:1.4.0 (compile), org.codehaus.jackson:jackson-core-asl:jar:1.5.0 (compile), org.codehaus.jackson:jackson-mapper-asl:jar:1.5.0 (compile), org.scala-lang:scala-library:jar:2.9.0 (compile), org.scala-tools.sbinary:sbinary_2.9.0:jar:0.4.0 (compile), net.sf.carafe.jcarafe:jcarafe-core_2.9.1:jar:0.9.8.3.RC4 (compile), net.sf.mastif:mastif-i2b2:jar:1.4 (compile), net.sf.mastif:mastif-zoner:jar:1.4 (compile), org.apache.ctakes:ctakes-lvg:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-chunker:jar:3.1.0-SNAPSHOT (compile)]
Stack trace :
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal on project ctakes-assertion: Could not resolve dependencies for project org.apache.ctakes:ctakes-assertion:jar:3.1.0-SNAPSHOT: Failed to collect dependencies for [org.apache.ctakes:ctakes-assertion-res:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-assertion-zoner:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-type-system:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-core:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-constituency-parser:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-utils:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-pos-tagger:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dependency-parser:jar:3.1.0-SNAPSHOT (compile), org.cleartk:cleartk-ml:jar:1.3.0 (compile), org.cleartk:cleartk-ml-libsvm:jar:1.2.0 (compile), org.cleartk:cleartk-ml-opennlp-maxent:jar:1.1.2 (compile), org.cleartk:cleartk-util:jar:0.9.2 (compile), org.cleartk:cleartk-eval:jar:0.9.2 (compile), args4j:args4j:jar:2.0.16 (compile), commons-io:commons-io:jar:2.0.1 (compile), commons-lang:commons-lang:jar:2.4 (compile), commons-logging:commons-logging:jar:1.1.1 (compile), com.google.guava:guava:jar:10.0 (compile), commons-cli:commons-cli:jar:1.2 (compile), com.carrotsearch:hppc:jar:0.4.1 (compile), jdom:jdom:jar:1.0 (compile), junit:junit:jar:[4.10,4.10] (test), log4j:log4j:jar:1.2.16 (compile), org.apache.opennlp:opennlp-maxent:jar:3.0.2-incubating (compile), org.apache.opennlp:opennlp-tools:jar:1.5.2-incubating (compile), org.apache.lucene:lucene-core:jar:4.0.0 (compile), tw.edu.ntu.csie:libsvm:jar:3.1 (compile), org.springframework:spring-core:jar:3.1.2.RELEASE (compile), org.uimafit:uimafit:jar:1.4.0 (compile), org.codehaus.jackson:jackson-core-asl:jar:1.5.0 (compile), org.codehaus.jackson:jackson-mapper-asl:jar:1.5.0 (compile), org.scala-lang:scala-library:jar:2.9.0 (compile), org.scala-tools.sbinary:sbinary_2.9.0:jar:0.4.0 (compile), net.sf.carafe.jcarafe:jcarafe-core_2.9.1:jar:0.9.8.3.RC4 (compile), net.sf.mastif:mastif-i2b2:jar:1.4 (compile), net.sf.mastif:mastif-zoner:jar:1.4 (compile), org.apache.ctakes:ctakes-lvg:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-chunker:jar:3.1.0-SNAPSHOT (compile)]
at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:210)
at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies(LifecycleDependencyResolver.java:117)
at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved(MojoExecutor.java:258)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:201)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Caused by: org.apache.maven.project.DependencyResolutionException: Could not resolve dependencies for project org.apache.ctakes:ctakes-assertion:jar:3.1.0-SNAPSHOT: Failed to collect dependencies for [org.apache.ctakes:ctakes-assertion-res:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-assertion-zoner:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-type-system:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-core:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-constituency-parser:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-utils:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-pos-tagger:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dependency-parser:jar:3.1.0-SNAPSHOT (compile), org.cleartk:cleartk-ml:jar:1.3.0 (compile), org.cleartk:cleartk-ml-libsvm:jar:1.2.0 (compile), org.cleartk:cleartk-ml-opennlp-maxent:jar:1.1.2 (compile), org.cleartk:cleartk-util:jar:0.9.2 (compile), org.cleartk:cleartk-eval:jar:0.9.2 (compile), args4j:args4j:jar:2.0.16 (compile), commons-io:commons-io:jar:2.0.1 (compile), commons-lang:commons-lang:jar:2.4 (compile), commons-logging:commons-logging:jar:1.1.1 (compile), com.google.guava:guava:jar:10.0 (compile), commons-cli:commons-cli:jar:1.2 (compile), com.carrotsearch:hppc:jar:0.4.1 (compile), jdom:jdom:jar:1.0 (compile), junit:junit:jar:[4.10,4.10] (test), log4j:log4j:jar:1.2.16 (compile), org.apache.opennlp:opennlp-maxent:jar:3.0.2-incubating (compile), org.apache.opennlp:opennlp-tools:jar:1.5.2-incubating (compile), org.apache.lucene:lucene-core:jar:4.0.0 (compile), tw.edu.ntu.csie:libsvm:jar:3.1 (compile), org.springframework:spring-core:jar:3.1.2.RELEASE (compile), org.uimafit:uimafit:jar:1.4.0 (compile), org.codehaus.jackson:jackson-core-asl:jar:1.5.0 (compile), org.codehaus.jackson:jackson-mapper-asl:jar:1.5.0 (compile), org.scala-lang:scala-library:jar:2.9.0 (compile), org.scala-tools.sbinary:sbinary_2.9.0:jar:0.4.0 (compile), net.sf.carafe.jcarafe:jcarafe-core_2.9.1:jar:0.9.8.3.RC4 (compile), net.sf.mastif:mastif-i2b2:jar:1.4 (compile), net.sf.mastif:mastif-zoner:jar:1.4 (compile), org.apache.ctakes:ctakes-lvg:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-chunker:jar:3.1.0-SNAPSHOT (compile)]
at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:158)
at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:185)
... 30 more
Caused by: org.sonatype.aether.collection.DependencyCollectionException: Failed to collect dependencies for [org.apache.ctakes:ctakes-assertion-res:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-assertion-zoner:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-type-system:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-core:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-constituency-parser:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-utils:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-pos-tagger:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-dependency-parser:jar:3.1.0-SNAPSHOT (compile), org.cleartk:cleartk-ml:jar:1.3.0 (compile), org.cleartk:cleartk-ml-libsvm:jar:1.2.0 (compile), org.cleartk:cleartk-ml-opennlp-maxent:jar:1.1.2 (compile), org.cleartk:cleartk-util:jar:0.9.2 (compile), org.cleartk:cleartk-eval:jar:0.9.2 (compile), args4j:args4j:jar:2.0.16 (compile), commons-io:commons-io:jar:2.0.1 (compile), commons-lang:commons-lang:jar:2.4 (compile), commons-logging:commons-logging:jar:1.1.1 (compile), com.google.guava:guava:jar:10.0 (compile), commons-cli:commons-cli:jar:1.2 (compile), com.carrotsearch:hppc:jar:0.4.1 (compile), jdom:jdom:jar:1.0 (compile), junit:junit:jar:[4.10,4.10] (test), log4j:log4j:jar:1.2.16 (compile), org.apache.opennlp:opennlp-maxent:jar:3.0.2-incubating (compile), org.apache.opennlp:opennlp-tools:jar:1.5.2-incubating (compile), org.apache.lucene:lucene-core:jar:4.0.0 (compile), tw.edu.ntu.csie:libsvm:jar:3.1 (compile), org.springframework:spring-core:jar:3.1.2.RELEASE (compile), org.uimafit:uimafit:jar:1.4.0 (compile), org.codehaus.jackson:jackson-core-asl:jar:1.5.0 (compile), org.codehaus.jackson:jackson-mapper-asl:jar:1.5.0 (compile), org.scala-lang:scala-library:jar:2.9.0 (compile), org.scala-tools.sbinary:sbinary_2.9.0:jar:0.4.0 (compile), net.sf.carafe.jcarafe:jcarafe-core_2.9.1:jar:0.9.8.3.RC4 (compile), net.sf.mastif:mastif-i2b2:jar:1.4 (compile), net.sf.mastif:mastif-zoner:jar:1.4 (compile), org.apache.ctakes:ctakes-lvg:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.0-SNAPSHOT (compile), org.apache.ctakes:ctakes-chunker:jar:3.1.0-SNAPSHOT (compile)]
at org.sonatype.aether.impl.internal.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:258)
at org.sonatype.aether.impl.internal.DefaultRepositorySystem.collectDependencies(DefaultRepositorySystem.java:308)
at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:150)
... 31 more
Caused by: org.sonatype.aether.resolution.ArtifactDescriptorException: Failed to read artifact descriptor for org.mitre:jcarafe-core_2.9.1:jar:0.9.8.2
at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:296)
at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor(DefaultArtifactDescriptorReader.java:186)
at org.sonatype.aether.impl.internal.DefaultDependencyCollector.process(DefaultDependencyCollector.java:412)
at org.sonatype.aether.impl.internal.DefaultDependencyCollector.process(DefaultDependencyCollector.java:544)
at org.sonatype.aether.impl.internal.DefaultDependencyCollector.process(DefaultDependencyCollector.java:544)
at org.sonatype.aether.impl.internal.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:240)
... 33 more
Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not transfer artifact org.mitre:jcarafe-core_2.9.1:pom:0.9.8.2 from/to mitrechatterrepository (http://rcf.mitre.org/project/chatter/repo/): rcf.mitre.org
at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:538)
at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:216)
at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:193)
at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:281)
... 38 more
Caused by: org.sonatype.aether.transfer.ArtifactTransferException: Could not transfer artifact org.mitre:jcarafe-core_2.9.1:pom:0.9.8.2 from/to mitrechatterrepository (http://rcf.mitre.org/project/chatter/repo/): rcf.mitre.org
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:951)
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:941)
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:669)
at org.sonatype.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:60)
... 3 more
Caused by: org.apache.maven.wagon.TransferFailedException: rcf.mitre.org
at org.apache.maven.wagon.shared.http4.AbstractHttpClientWagon.fillInputData(AbstractHttpClientWagon.java:799)
at org.apache.maven.wagon.StreamWagon.getInputStream(StreamWagon.java:116)
at org.apache.maven.wagon.StreamWagon.getIfNewer(StreamWagon.java:88)
at org.apache.maven.wagon.StreamWagon.get(StreamWagon.java:61)
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:601)
... 4 more
Caused by: java.net.UnknownHostException: rcf.mitre.org
at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
at java.net.InetAddress$1.lookupAllHostAddr(InetAddress.java:876)
at java.net.InetAddress.getAddressFromNameService(InetAddress.java:1229)
at java.net.InetAddress.getAllByName0(InetAddress.java:1180)
at java.net.InetAddress.getAllByName(InetAddress.java:1110)
at java.net.InetAddress.getAllByName(InetAddress.java:1046)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.DefaultClientConnectionOperator.resolveHostname(DefaultClientConnectionOperator.java:242)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:130)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.AbstractPoolEntry.open(AbstractPoolEntry.java:149)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.AbstractPooledConnAdapter.open(AbstractPooledConnAdapter.java:121)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:573)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:425)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:820)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:754)
at org.apache.maven.wagon.shared.http4.AbstractHttpClientWagon.execute(AbstractHttpClientWagon.java:674)
at org.apache.maven.wagon.shared.http4.AbstractHttpClientWagon.fillInputData(AbstractHttpClientWagon.java:793)
... 8 more
Sending e-mails to: notifications@ctakes.apache.org mcoarr@mitre.org
channel stopped
Jenkins build is back to normal : ctakes-trunk-compiletest #356
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/356/changes>
Re: Build failed in Jenkins: ctakes-trunk-compiletest #355
Posted by "Coarr, Matt" <mc...@mitre.org>.
It's fixed and building correctly.
https://builds.apache.org/job/ctakes-trunk-compiletest/356/?auto_refresh=false
I had made some changes to update dependencies and then reverted back to the old version (all on 7/18), but in the mean time, a directory that was still needed was deleted. I'm very sorry for the mixup.
Matt
From: Steven Bethard <st...@Colorado.EDU>>
Reply-To: "dev@ctakes.apache.org<ma...@ctakes.apache.org>" <de...@ctakes.apache.org>>
Date: Monday, July 22, 2013 14:14
To: "dev@ctakes.apache.org<ma...@ctakes.apache.org>" <de...@ctakes.apache.org>>
Subject: Re: Build failed in Jenkins: ctakes-trunk-compiletest #355
Here's that error again:
On 22 Jul2013, at 12:05 , Apache Jenkins Server <je...@builds.apache.org>> wrote:
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
Could whoever is taking care of "ctakes-assertion-zoner" fix this? We haven't had a successful build since July 18…
Steve
Re: Build failed in Jenkins: ctakes-trunk-compiletest #355
Posted by Steven Bethard <st...@Colorado.EDU>.
Here's that error again:
On 22 Jul2013, at 12:05 , Apache Jenkins Server <je...@builds.apache.org> wrote:
> [ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
Could whoever is taking care of "ctakes-assertion-zoner" fix this? We haven't had a successful build since July 18…
Steve
Build failed in Jenkins: ctakes-trunk-compiletest #355
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/355/changes>
Changes:
[dligach] added a version of NP expander that simply returns the text of the enclosing NP
------------------------------------------
Started by an SCM change
Building remotely on ubuntu1 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-22T18:04:56.456 +0000'
U ctakes-clinical-pipeline/pom.xml
U ctakes-temporal/pom.xml
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimeAnnotator.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java
A ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CompareFeatureStructures.java
U ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java
U ctakes-core/src/test/java/org/apache/ctakes/core/ci/HyphenTextModifierImplTests.java
U ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileLocator.java
U ctakes-assertion-zoner/pom.xml
D ctakes-assertion/lib
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/CrossValidateChi2GridSearch.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/TrainAttributeModels.java
U ctakes-distribution/src/main/assembly/bin.xml
U ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/IdentifiedAnnotationExpander.java
At revision 1505751
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@7036f932:ubuntu1
at hudson.FilePath.act(FilePath.java:861)
at hudson.FilePath.act(FilePath.java:838)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
at hudson.model.Run.execute(Run.java:1568)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
... 11 more
Build failed in Jenkins: ctakes-trunk-compiletest #354
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/354/changes>
Changes:
[swu] some extra stuff for feature selection grid search and evaluations in general
[james-masanz] CTAKES-183 Update reference to resource that was moved to ctakes-core-res
[james-masanz] CTAKES-218 Have FileLocator also try the second method to resolve the file path if the first returns null (in addition to if the first throws an exception)
------------------------------------------
Started by an SCM change
Building remotely on ubuntu3 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-19T21:15:42.624 +0000'
U pom.xml
U ctakes-clinical-pipeline/pom.xml
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java
U ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileLocator.java
U ctakes-core/src/test/java/org/apache/ctakes/core/ci/HyphenTextModifierImplTests.java
U ctakes-assertion/pom.xml
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/CrossValidateChi2GridSearch.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/TrainAttributeModels.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java
At revision 1505025
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@119b94e5:ubuntu3
at hudson.FilePath.act(FilePath.java:861)
at hudson.FilePath.act(FilePath.java:838)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
at hudson.model.Run.execute(Run.java:1568)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
... 11 more
Build failed in Jenkins: ctakes-trunk-compiletest #353
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/353/changes>
Changes:
[clin] Make a Yate's parameter for Chi2 feature selection. So people may turn on or off the Yate's correction for Chi2 value calculation.
If Yate's correction is on (boolean Yates = true), small difference between observed value and expected value (<0.5) will be ignored. More features will be trimmed.
Else, small difference will be kept. Users have the freedom to keep all features.
------------------------------------------
Started by an SCM change
Building remotely on ubuntu2 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-19T17:02:30.717 +0000'
U ctakes-clinical-pipeline/pom.xml
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java
U ctakes-assertion/pom.xml
U pom.xml
At revision 1504942
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@32401cae:ubuntu2
at hudson.FilePath.act(FilePath.java:861)
at hudson.FilePath.act(FilePath.java:838)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
at hudson.model.Run.execute(Run.java:1568)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
... 11 more
Build failed in Jenkins: ctakes-trunk-compiletest #352
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/352/changes>
Changes:
[mattcoarr] temporarily reverting library changes so I don't break the build
------------------------------------------
Started by an SCM change
Building remotely on ubuntu4 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-18T23:09:22.926 +0000'
U ctakes-clinical-pipeline/pom.xml
U ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java
A ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CompareFeatureStructures.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/THYMEAnaforaXMLReader.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimeAnnotator.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/Evaluation_ImplBase.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java
U ctakes-temporal/pom.xml
U ctakes-assertion-zoner/pom.xml
D ctakes-assertion/lib
U ctakes-distribution/src/main/assembly/bin.xml
U KEYS
At revision 1504717
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@5f258d19:ubuntu4
at hudson.FilePath.act(FilePath.java:861)
at hudson.FilePath.act(FilePath.java:838)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
at hudson.model.Run.execute(Run.java:1568)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
... 11 more