[jira] [Updated] (ARROW-6957) [CI][Crossbow] Nightly R with sanitizers build fails installing dependencies

["ASF GitHub Bot (Jira)" <ji...@apache.org>]

     [ https://issues.apache.org/jira/browse/ARROW-6957?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

ASF GitHub Bot updated ARROW-6957:
----------------------------------
    Labels: pull-request-available  (was: )

> [CI][Crossbow] Nightly R with sanitizers build fails installing dependencies
> ----------------------------------------------------------------------------
>
>                 Key: ARROW-6957
>                 URL: https://issues.apache.org/jira/browse/ARROW-6957
>             Project: Apache Arrow
>          Issue Type: Bug
>          Components: Continuous Integration, R
>            Reporter: Neal Richardson
>            Priority: Major
>              Labels: pull-request-available
>
> See https://circleci.com/gh/ursa-labs/crossbow/4006 for example. Failure looks like this:
> {code}
> ...
> g++ -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/usr/local/RDsan/lib/R/include" -DNDEBUG  -I'/usr/local/RDsan/lib/R/site-library/Rcpp/include' -I'/usr/local/RD/lib/R/library/BH/include' -I/usr/local/include  -I. -Ircon -fpic  -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -Wall -pedantic  -c TokenizerWs.cpp -o TokenizerWs.o
> cc1plus: out of memory allocating 65536 bytes after a total of 31866880 bytes
> cc1plus: out of memory allocating 65536 bytes after a total of 52080640 bytes
> virtual memory exhausted: Cannot allocate memory
> virtual memory exhausted: Cannot allocate memory
> /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'Collector.o' failed
> make[1]: *** [Collector.o] Error 1
> make[1]: *** Waiting for unfinished jobs....
> /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'CollectorGuess.o' failed
> make[1]: *** [CollectorGuess.o] Error 1
> /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'Reader.o' failed
> make[1]: *** [Reader.o] Error 1
> /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'TokenizerWs.o' failed
> make[1]: *** [TokenizerWs.o] Error 1
> make[1]: Leaving directory '/tmp/RtmpvSXO7m/R.INSTALL992bafde57/readr/src'
> ERROR: compilation failed for package ‘readr’
> * removing ‘/usr/local/RDsan/lib/R/site-library/readr’
> Error: Failed to install 'decor' from GitHub:
>   (converted from warning) installation of one or more packages failed,
>   probably ‘readr’
> Execution halted
> ERROR: Service 'r-sanitizer' failed to build: The command '/bin/sh -c RDsan -e "remotes::install_github('romainfrancois/decor')"' returned a non-zero code: 1
> {code}
> Some thoughts: 
> * This dependency is not needed to run the tests--it is a developer dependency, only needed when you're editing the Rcpp code. So we could conditionally not install it if we're on CI.
> * The docker code around this changed in ARROW-6918 last week, around the time this started failing. The installation of this package was moved to a different part of the job, and it appears that {{MAKEVARS=-j8}} was added. Maybe that's causing more memory to be used concurrently? (Also, I would be shocked if CircleCI gave us a VM with 8 cores, so this seems wasteful and should probably be tuned to whatever the current system has.)
> cc [~apitrou][~fsaintjacques]



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