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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/04/14 16:36:29 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #788
See <https://builds.apache.org/job/ctakes-trunk-compiletest/788/changes>
Changes:
[clin] enable "test-on-train" parameter.
remove timex-induced relations
------------------------------------------
[...truncated 12716 lines...]
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
14 Apr 2016 14:35:37 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
14 Apr 2016 14:35:37 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14 Apr 2016 14:35:37 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
14 Apr 2016 14:35:38 INFO SentenceDetector - Starting processing.
14 Apr 2016 14:35:38 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14 Apr 2016 14:35:38 INFO LvgAnnotator - process(JCas)
14 Apr 2016 14:35:38 INFO ContextDependentTokenizerAnnotator - process(JCas)
14 Apr 2016 14:35:38 INFO POSTagger - process(JCas)
14 Apr 2016 14:35:38 INFO BackwardsTimeAnnotatorTest - Event: recently
14 Apr 2016 14:35:38 INFO BackwardsTimeAnnotatorTest - Event: 6 months ago
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.493 sec
Running org.apache.ctakes.temporal.ae.DocTimeRelAnnotatorTest
14 Apr 2016 14:35:41 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
14 Apr 2016 14:35:51 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
14 Apr 2016 14:35:51 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
14 Apr 2016 14:35:51 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties
14 Apr 2016 14:35:51 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties
14 Apr 2016 14:35:51 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
14 Apr 2016 14:35:51 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
14 Apr 2016 14:35:51 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
14 Apr 2016 14:35:51 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14 Apr 2016 14:35:51 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
14 Apr 2016 14:35:52 INFO SentenceDetector - Starting processing.
14 Apr 2016 14:35:52 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14 Apr 2016 14:35:52 INFO LvgAnnotator - process(JCas)
14 Apr 2016 14:35:52 INFO ContextDependentTokenizerAnnotator - process(JCas)
14 Apr 2016 14:35:52 INFO POSTagger - process(JCas)
14 Apr 2016 14:35:52 INFO DocTimeRelAnnotatorTest - Event: old DocTimeRel:OVERLAP
14 Apr 2016 14:35:52 INFO DocTimeRelAnnotatorTest - Event: referred DocTimeRel:BEFORE
14 Apr 2016 14:35:52 INFO DocTimeRelAnnotatorTest - Event: diagnosed DocTimeRel:BEFORE
14 Apr 2016 14:35:52 INFO DocTimeRelAnnotatorTest - Event: cancer DocTimeRel:OVERLAP
14 Apr 2016 14:35:52 INFO DocTimeRelAnnotatorTest - Event: blood DocTimeRel:OVERLAP
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.69 sec
Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest
14 Apr 2016 14:35:55 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
....Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x000000072fd80000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory.
# An error report file with more information is saved as:
# <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/hs_err_pid4985.log>
Results :
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.850s]
[INFO] Apache cTAKES common type system .................. SUCCESS [10.773s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.704s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [1.364s]
[INFO] Apache cTAKES core ................................ SUCCESS [31.399s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.661s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.647s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.279s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.187s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.918s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [17.832s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.609s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.850s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1:01.562s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.756s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.384s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.309s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.471s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.045s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.408s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.234s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.801s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [23.496s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.477s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [8.637s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.400s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [5.374s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.340s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [6.576s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [2.192s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.702s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.748s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [5.684s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.343s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.922s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.310s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [2.575s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [9.157s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.267s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [7.140s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [7.363s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.992s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [50.100s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:03.182s
[INFO] Finished at: Thu Apr 14 14:35:57 UTC 2016
[INFO] Final Memory: 110M/648M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org clin@yelp.com
channel stopped
Jenkins build is back to normal : ctakes-trunk-compiletest #790
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/790/changes>
Build failed in Jenkins: ctakes-trunk-compiletest #789
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/789/>
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[...truncated 14134 lines...]
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal ---
[INFO] Compiling 6 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/test-classes>
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.temporal.ae.BackwardsTimeAnnotatorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
14 Apr 2016 18:15:07 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
14 Apr 2016 18:15:18 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
14 Apr 2016 18:15:18 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
14 Apr 2016 18:15:18 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties
14 Apr 2016 18:15:18 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties
14 Apr 2016 18:15:18 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
14 Apr 2016 18:15:18 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
14 Apr 2016 18:15:18 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
14 Apr 2016 18:15:18 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14 Apr 2016 18:15:18 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
14 Apr 2016 18:15:19 INFO SentenceDetector - Starting processing.
14 Apr 2016 18:15:19 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14 Apr 2016 18:15:19 INFO LvgAnnotator - process(JCas)
14 Apr 2016 18:15:19 INFO ContextDependentTokenizerAnnotator - process(JCas)
14 Apr 2016 18:15:19 INFO POSTagger - process(JCas)
14 Apr 2016 18:15:19 INFO BackwardsTimeAnnotatorTest - Event: recently
14 Apr 2016 18:15:19 INFO BackwardsTimeAnnotatorTest - Event: 6 months ago
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.984 sec
Running org.apache.ctakes.temporal.ae.DocTimeRelAnnotatorTest
14 Apr 2016 18:15:22 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
......
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.108s]
[INFO] Apache cTAKES common type system .................. SUCCESS [11.234s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.599s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [1.946s]
[INFO] Apache cTAKES core ................................ SUCCESS [33.810s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.550s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.022s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.429s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.447s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.914s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [18.984s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.746s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.780s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [28.924s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.770s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.502s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.665s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.553s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.350s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.694s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.266s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.157s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [26.874s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.931s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [10.167s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.414s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.202s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.328s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [7.328s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.354s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.665s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.404s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [9.176s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [2.707s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.046s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.298s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [2.509s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [10.908s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.504s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [7.034s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [13.209s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.452s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [41.792s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5:49.236s
[INFO] Finished at: Thu Apr 14 18:15:26 UTC 2016
[INFO] Final Memory: 108M/788M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
channel stopped