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Posted to commits@airavata.apache.org by sc...@apache.org on 2015/06/18 22:51:11 UTC
[04/17] airavata git commit: Merge branch 'master' of
https://git-wip-us.apache.org/repos/asf/airavata
Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/8a0e6ce4
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/8a0e6ce4
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/8a0e6ce4
Branch: refs/heads/master
Commit: 8a0e6ce4439abece41e30522d635aafc7afaa10c
Parents: ce04fb9 7873292
Author: Supun Nakandala <sc...@apache.org>
Authored: Sat Jun 13 15:01:39 2015 +0530
Committer: Supun Nakandala <sc...@apache.org>
Committed: Sat Jun 13 15:01:39 2015 +0530
----------------------------------------------------------------------
.../server/handler/AiravataServerHandler.java | 417 +-
.../AiravataExperimentStatusUpdator.java | 14 +-
.../java/org/apache/airavata/api/Airavata.java | 6757 +++++++-----------
.../airavata/api/airavata_apiConstants.java | 72 +
.../org/apache/airavata/model/Workflow.java | 78 +-
.../ApplicationDeploymentDescription.java | 2 +-
.../appdeployment/ApplicationModule.java | 2 +-
.../appcatalog/appdeployment/SetEnvPaths.java | 2 +-
.../applicationDeploymentModelConstants.java | 56 -
.../application_deployment_modelConstants.java | 58 +
.../ApplicationInterfaceDescription.java | 78 +-
.../model/appcatalog/appinterface/DataType.java | 78 -
.../appinterface/InputDataObjectType.java | 1481 ----
.../appinterface/InputMetadataType.java | 62 -
.../appinterface/OutputDataObjectType.java | 1279 ----
.../applicationInterfaceModelConstants.java | 56 -
.../application_interface_modelConstants.java | 58 +
.../computeresource/AuthenticationMode.java | 70 -
.../appcatalog/computeresource/BatchQueue.java | 2 +-
.../computeresource/CloudJobSubmission.java | 2 +-
.../computeresource/CloundJobSubmission.java | 908 ---
.../ComputeResourceDescription.java | 2 +-
.../computeresource/DataMovementInterface.java | 2 +-
.../computeresource/GlobusJobSubmission.java | 2 +-
.../computeresource/GridFTPDataMovement.java | 2 +-
.../computeresource/JobSubmissionInterface.java | 2 +-
.../computeresource/LOCALDataMovement.java | 2 +-
.../computeresource/LOCALSubmission.java | 2 +-
.../computeresource/ResourceJobManager.java | 2 +-
.../computeresource/SCPDataMovement.java | 2 +-
.../computeresource/SSHJobSubmission.java | 2 +-
.../computeresource/UnicoreDataMovement.java | 2 +-
.../computeresource/UnicoreJobSubmission.java | 2 +-
.../computeResourceModelConstants.java | 56 -
.../compute_resource_modelConstants.java | 58 +
.../ComputeResourcePreference.java | 2 +-
.../gatewayprofile/GatewayResourceProfile.java | 2 +-
.../gatewayResourceProfileModelConstants.java | 56 -
.../airavata/model/application/io/DataType.java | 78 +
.../application/io/InputDataObjectType.java | 1481 ++++
.../application/io/OutputDataObjectType.java | 1279 ++++
.../airavata/model/commons/ErrorModel.java | 984 +++
.../model/commons/ValidationResults.java | 559 ++
.../airavata/model/commons/ValidatorResult.java | 521 ++
.../commons/airavata_commonsConstants.java | 58 +
.../error/AiravataClientConnectException.java | 32 -
.../model/error/AiravataClientException.java | 2 +-
.../model/error/AiravataSystemException.java | 2 +-
.../model/error/AuthenticationException.java | 2 +-
.../model/error/AuthorizationException.java | 2 +-
.../error/ExperimentNotFoundException.java | 2 +-
.../model/error/InvalidRequestException.java | 2 +-
.../model/error/LaunchValidationException.java | 521 --
.../model/error/ProjectNotFoundException.java | 2 +-
.../airavata/model/error/TimedOutException.java | 2 +-
.../airavata/model/error/ValidationResults.java | 559 --
.../airavata/model/error/ValidatorResult.java | 514 --
.../model/experiment/ExperimentModel.java | 2222 ++++++
.../experiment/ExperimentSearchFields.java | 74 +
.../model/experiment/ExperimentStatistics.java | 1332 ++++
.../experiment/ExperimentSummaryModel.java | 1139 +++
.../model/experiment/ExperimentType.java | 62 +
.../experiment/UserConfigurationDataModel.java | 1032 +++
.../org/apache/airavata/model/job/JobModel.java | 1043 +++
.../event/ExperimentStatusChangeEvent.java | 24 +-
.../model/messaging/event/JobIdentifier.java | 2 +-
.../messaging/event/JobStatusChangeEvent.java | 24 +-
.../event/JobStatusChangeRequestEvent.java | 24 +-
.../airavata/model/messaging/event/Message.java | 2 +-
.../messaging/event/ProcessSubmitEvent.java | 2 +-
.../model/messaging/event/TaskIdentifier.java | 2 +-
.../messaging/event/TaskOutputChangeEvent.java | 42 +-
.../messaging/event/TaskStatusChangeEvent.java | 24 +-
.../event/TaskStatusChangeRequestEvent.java | 24 +-
.../model/messaging/event/TaskSubmitEvent.java | 2 +-
.../messaging/event/TaskTerminateEvent.java | 2 +-
.../messaging/event/WorkflowIdentifier.java | 608 --
.../event/WorkflowNodeStatusChangeEvent.java | 524 --
.../event/messagingEventsConstants.java | 56 -
.../event/messaging_eventsConstants.java | 58 +
.../airavata/model/process/ProcessModel.java | 1856 +++++
.../ComputationalResourceSchedulingModel.java | 1020 +++
.../airavata/model/security/AuthzToken.java | 2 +-
.../airavata/model/status/ExperimentState.java | 83 +
.../airavata/model/status/ExperimentStatus.java | 644 ++
.../apache/airavata/model/status/JobState.java | 80 +
.../apache/airavata/model/status/JobStatus.java | 631 ++
.../airavata/model/status/ProcessState.java | 77 +
.../airavata/model/status/ProcessStatus.java | 631 ++
.../apache/airavata/model/status/TaskState.java | 71 +
.../airavata/model/status/TaskStatus.java | 631 ++
.../model/task/DataStagingTaskModel.java | 826 +++
.../apache/airavata/model/task/TaskModel.java | 1252 ++++
.../apache/airavata/model/task/TaskTypes.java | 75 +
.../model/workflowDataModelConstants.java | 56 -
.../model/workflow_data_modelConstants.java | 58 +
.../airavata/model/workspace/Gateway.java | 2 +-
.../apache/airavata/model/workspace/Group.java | 2 +-
.../airavata/model/workspace/Project.java | 7 +-
.../apache/airavata/model/workspace/User.java | 2 +-
.../workspace/experiment/ActionableGroup.java | 71 -
.../experiment/AdvancedInputDataHandling.java | 726 --
.../experiment/AdvancedOutputDataHandling.java | 625 --
.../workspace/experiment/ApplicationStatus.java | 513 --
.../ComputationalResourceScheduling.java | 1330 ----
.../workspace/experiment/CorrectiveAction.java | 65 -
.../experiment/DataTransferDetails.java | 728 --
.../workspace/experiment/ErrorCategory.java | 80 -
.../workspace/experiment/ErrorDetails.java | 1338 ----
.../workspace/experiment/ExecutionUnit.java | 68 -
.../model/workspace/experiment/Experiment.java | 2856 --------
.../experiment/ExperimentSearchFields.java | 74 -
.../workspace/experiment/ExperimentState.java | 89 -
.../experiment/ExperimentStatistics.java | 1332 ----
.../workspace/experiment/ExperimentStatus.java | 525 --
.../workspace/experiment/ExperimentSummary.java | 1139 ---
.../model/workspace/experiment/JobDetails.java | 1317 ----
.../model/workspace/experiment/JobState.java | 92 -
.../model/workspace/experiment/JobStatus.java | 525 --
.../experiment/QualityOfServiceParams.java | 623 --
.../model/workspace/experiment/TaskDetails.java | 2338 ------
.../model/workspace/experiment/TaskState.java | 95 -
.../model/workspace/experiment/TaskStatus.java | 525 --
.../workspace/experiment/TransferState.java | 95 -
.../workspace/experiment/TransferStatus.java | 525 --
.../experiment/UserConfigurationData.java | 1365 ----
.../workspace/experiment/ValidationResults.java | 559 --
.../workspace/experiment/ValidatorResult.java | 521 --
.../experiment/WorkflowNodeDetails.java | 1597 -----
.../workspace/experiment/WorkflowNodeState.java | 80 -
.../experiment/WorkflowNodeStatus.java | 525 --
.../experiment/experimentModelConstants.java | 60 -
.../exception/AiravataStartupException.java | 46 +
.../exception/AiravataStratupException.java | 9 -
.../airavata/common/logger/AiravataLogger.java | 677 --
.../common/logger/AiravataLoggerFactory.java | 34 -
.../common/logger/AiravataLoggerImpl.java | 323 -
.../apache/airavata/common/utils/Constants.java | 31 +-
.../common/utils/LocalEventPublisher.java | 47 +
.../airavata/common/utils/MonitorPublisher.java | 47 -
.../airavata/common/utils/ServerSettings.java | 74 +-
.../main/resources/airavata-server.properties | 153 +-
.../gfac/bes/provider/impl/BESProvider.java | 2 +-
.../gfac/bes/security/X509SecurityContext.java | 8 +-
.../gfac/bes/utils/DataTransferrer.java | 4 +-
.../apache/airavata/gfac/core/Constants.java | 82 -
.../org/apache/airavata/gfac/core/GFac.java | 4 +-
.../airavata/gfac/core/GFacConfiguration.java | 34 +-
.../airavata/gfac/core/GFacConstants.java | 86 +
.../gfac/core/GFacThreadPoolExecutor.java | 6 +-
.../apache/airavata/gfac/core/GFacUtils.java | 21 +-
.../apache/airavata/gfac/core/RequestData.java | 10 +-
.../apache/airavata/gfac/core/Scheduler.java | 22 +-
.../gfac/core/context/JobExecutionContext.java | 12 +-
.../gfac/core/context/ProcessContext.java | 89 +
.../gfac/core/handler/AbstractHandler.java | 6 +-
.../security/TokenizedMyProxyAuthInfo.java | 10 +-
.../gfac/impl/AiravataJobStatusUpdator.java | 10 +-
.../gfac/impl/AiravataTaskStatusUpdator.java | 12 +-
.../impl/AiravataWorkflowNodeStatusUpdator.java | 10 +-
.../airavata/gfac/impl/BetterGfacImpl.java | 94 +-
.../apache/airavata/gfac/impl/GFacEngine.java | 53 +
.../apache/airavata/gfac/impl/GFacWorker.java | 87 +
.../airavata/gfac/impl/OutHandlerWorker.java | 16 +-
.../gfac/local/provider/impl/LocalProvider.java | 10 +-
.../monitor/core/AiravataAbstractMonitor.java | 3 +-
.../gfac/monitor/email/EmailBasedMonitor.java | 2 +-
.../handlers/GridPullMonitorHandler.java | 2 +-
.../monitor/impl/pull/qstat/HPCPullMonitor.java | 16 +-
.../monitor/impl/push/amqp/AMQPMonitor.java | 16 +-
.../monitor/impl/push/amqp/BasicConsumer.java | 6 +-
.../gfac/ssh/handler/SSHOutputHandler.java | 4 +-
.../gfac/ssh/provider/impl/SSHProvider.java | 22 +-
.../gfac/ssh/security/TokenizedSSHAuthInfo.java | 10 +-
.../airavata/gfac/ssh/util/GFACSSHUtils.java | 4 +-
.../gfac/services/impl/LocalProviderTest.java | 4 +-
.../apache/airavata/job/AMQPMonitorTest.java | 10 +-
.../job/QstatMonitorTestWithMyProxyAuth.java | 6 +-
.../airavata/gfac/server/GfacServerHandler.java | 250 +-
.../registry/cpi/ApplicationInterface.java | 4 +-
.../engine/util/ProxyMonitorPublisher.java | 8 +-
.../airavata-api/airavata_api.thrift | 70 +-
.../airavata-api/airavata_commons.thrift | 54 +
.../airavata-api/airavata_data_models.thrift | 3 +
.../airavata-api/airavata_errors.thrift | 15 -
.../application_interface_model.thrift | 96 +-
.../airavata-api/application_io_models.thrift | 117 +
.../airavata-api/experiment_model.thrift | 391 +-
.../airavata-api/job_model.thrift | 37 +
.../airavata-api/messaging_events.thrift | 27 +-
.../airavata-api/process_model.thrift | 56 +
.../airavata-api/scheduling_model.thrift | 39 +
.../airavata-api/status_models.thrift | 102 +
.../airavata-api/task_model.thrift | 75 +
.../airavata-api/workflow_data_model.thrift | 6 +-
.../airavata-api/workspace_model.thrift | 4 +-
.../airavata_commons.thrift | 23 +-
.../experiment_model.thrift | 105 +
.../airavata-data-models/process_model.thrift | 23 +-
.../airavata-data-models/status_models.thrift | 56 +-
.../airavata-data-models/task_model.thrift | 4 +-
201 files changed, 24744 insertions(+), 36118 deletions(-)
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