You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@ctakes.apache.org by ch...@apache.org on 2014/12/18 18:42:56 UTC
svn commit: r1646497 - in /ctakes/trunk: ctakes-clinical-pipeline/
ctakes-clinical-pipeline/desc/analysis_engine/
ctakes-drug-ner/desc/analysis_engine/
Author: chenpei
Date: Thu Dec 18 17:42:56 2014
New Revision: 1646497
URL: http://svn.apache.org/r1646497
Log:
CTAKES-344 - Add DrugNER to clinical-pipeline
Add to default fast pipeline.
Remove redundant Aggregate and Dictionary descriptors inside drug ner.
It should just depend on Dictionary Lookup and not create it's own lookup dictionaries.
Removed:
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DictionaryLookupAnnotator.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DrugAggregateCDAProcessor.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DrugAggregateCDAUMLSProcessor.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextProcessor.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DrugAggregatePlaintextUMLSProcessor.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DrugCNP2LookupWindow.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/DrugLookupWindowAnnotator.xml
ctakes/trunk/ctakes-drug-ner/desc/analysis_engine/NegationDxAnnotator.xml
Modified:
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml
ctakes/trunk/ctakes-clinical-pipeline/pom.xml
Modified: ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml?rev=1646497&r1=1646496&r2=1646497&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml (original)
+++ ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml Thu Dec 18 17:42:56 2014
@@ -85,6 +85,10 @@
<delegateAnalysisEngine key="LvgAnnotator">
<import location="../../../ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml"/>
</delegateAnalysisEngine>
+
+ <delegateAnalysisEngine key="DrugNER">
+ <import location="../../../ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml"/>
+ </delegateAnalysisEngine>
<!--
<delegateAnalysisEngine key="AssertionAnnotator">
<import location="../../../ctakes-assertion/desc/AssertionMiniPipelineAnalysisEngine.xml"/>
@@ -171,6 +175,7 @@
<node>AdjustNounPhraseToIncludeFollowingPPNP</node>
<!--<node>LookupWindowAnnotator</node>-->
<node>DictionaryLookupAnnotatorDB</node>
+ <node>DrugNER</node>
<node>DependencyParser</node>
<node>SemanticRoleLabeler</node>
<node>ConstituencyParser</node>
Modified: ctakes/trunk/ctakes-clinical-pipeline/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/pom.xml?rev=1646497&r1=1646496&r2=1646497&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline/pom.xml (original)
+++ ctakes/trunk/ctakes-clinical-pipeline/pom.xml Thu Dec 18 17:42:56 2014
@@ -67,6 +67,10 @@
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-drug-ner</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-assertion</artifactId>
</dependency>
<dependency>