You are viewing a plain text version of this content. The canonical link for it is here.
Posted to issues@beam.apache.org by "ASF GitHub Bot (Jira)" <ji...@apache.org> on 2021/09/20 20:21:00 UTC
[jira] [Work logged] (BEAM-12803) SqlTransform doesn't work on
python 3.9
[ https://issues.apache.org/jira/browse/BEAM-12803?focusedWorklogId=653180&page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel#worklog-653180 ]
ASF GitHub Bot logged work on BEAM-12803:
-----------------------------------------
Author: ASF GitHub Bot
Created on: 20/Sep/21 20:20
Start Date: 20/Sep/21 20:20
Worklog Time Spent: 10m
Work Description: JonathanHourany opened a new pull request #15539:
URL: https://github.com/apache/beam/pull/15539
In Python 3.9 the use of [ _field_types in NamedTuples is full deprecated](https://docs.python.org/3/whatsnew/3.9.html#removed) in favor of `__annotations__` and is the cause of `IndexError` exceptions when using `SqlTransformer` in Python 3.9. This PR swaps out the deprecated calls.
------------------------
Thank you for your contribution! Follow this checklist to help us incorporate your contribution quickly and easily:
- [ ] [**Choose reviewer(s)**](https://beam.apache.org/contribute/#make-your-change) and mention them in a comment (`R: @username`).
- [ ] Format the pull request title like `[BEAM-XXX] Fixes bug in ApproximateQuantiles`, where you replace `BEAM-XXX` with the appropriate JIRA issue, if applicable. This will automatically link the pull request to the issue.
- [ ] Update `CHANGES.md` with noteworthy changes.
- [ ] If this contribution is large, please file an Apache [Individual Contributor License Agreement](https://www.apache.org/licenses/icla.pdf).
See the [Contributor Guide](https://beam.apache.org/contribute) for more tips on [how to make review process smoother](https://beam.apache.org/contribute/#make-reviewers-job-easier).
`ValidatesRunner` compliance status (on master branch)
--------------------------------------------------------
<table>
<thead>
<tr>
<th>Lang</th>
<th>ULR</th>
<th>Dataflow</th>
<th>Flink</th>
<th>Samza</th>
<th>Spark</th>
<th>Twister2</th>
</tr>
</thead>
<tbody>
<tr>
<td>Go</td>
<td>---</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Go/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Go/lastCompletedBuild/badge/icon">
</a>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Go_VR_Flink/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Go_VR_Flink/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Go_VR_Samza/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Go_VR_Samza/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Go_VR_Spark/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Go_VR_Spark/lastCompletedBuild/badge/icon">
</a>
</td>
<td>---</td>
</tr>
<tr>
<td>Java</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_ULR/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_ULR/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow/lastCompletedBuild/badge/icon?subject=V1">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow_Streaming/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow_Streaming/lastCompletedBuild/badge/icon?subject=V1+Streaming">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow_Java11/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow_Java11/lastCompletedBuild/badge/icon?subject=V1+Java+11">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_VR_Dataflow_V2/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_VR_Dataflow_V2/lastCompletedBuild/badge/icon?subject=V2">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_VR_Dataflow_V2_Streaming/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_VR_Dataflow_V2_Streaming/lastCompletedBuild/badge/icon?subject=V2+Streaming">
</a><br>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink/lastCompletedBuild/badge/icon?subject=Java+8">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink_Java11/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink_Java11/lastCompletedBuild/badge/icon?subject=Java+11">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Flink_Batch/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Flink_Batch/lastCompletedBuild/badge/icon?subject=Portable">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Flink_Streaming/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Flink_Streaming/lastCompletedBuild/badge/icon?subject=Portable+Streaming">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Samza/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Samza/lastCompletedBuild/badge/icon">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Samza/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Samza/lastCompletedBuild/badge/icon?subject=Portable">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Spark/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Spark/lastCompletedBuild/badge/icon">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Spark_Batch/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_PVR_Spark_Batch/lastCompletedBuild/badge/icon?subject=Portable">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_SparkStructuredStreaming/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_SparkStructuredStreaming/lastCompletedBuild/badge/icon?subject=Structured+Streaming">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Twister2/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Twister2/lastCompletedBuild/badge/icon">
</a>
</td>
</tr>
<tr>
<td>Python</td>
<td>---</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Py_VR_Dataflow/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Py_VR_Dataflow/lastCompletedBuild/badge/icon?subject=V1">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Py_VR_Dataflow_V2/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Py_VR_Dataflow_V2/lastCompletedBuild/badge/icon?subject=V2">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Py_ValCont/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Py_ValCont/lastCompletedBuild/badge/icon?subject=ValCont">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Python_PVR_Flink_Cron/lastCompletedBuild/badge/icon?subject=Portable">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Python_VR_Flink/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Python_VR_Flink/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Python_VR_Samza/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Python_VR_Samza/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Python_VR_Spark/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Python_VR_Spark/lastCompletedBuild/badge/icon">
</a>
</td>
<td>---</td>
</tr>
<tr>
<td>XLang</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Direct/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Direct/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Dataflow/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Dataflow/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Flink/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Flink/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Samza/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Samza/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Spark/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_XVR_Spark/lastCompletedBuild/badge/icon">
</a>
</td>
<td>---</td>
</tr>
</tbody>
</table>
Examples testing status on various runners
--------------------------------------------------------
<table>
<thead>
<tr>
<th>Lang</th>
<th>ULR</th>
<th>Dataflow</th>
<th>Flink</th>
<th>Samza</th>
<th>Spark</th>
<th>Twister2</th>
</tr>
</thead>
<tbody>
<tr>
<td>Go</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
</tr>
<tr>
<td>Java</td>
<td>---</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Java_Examples_Dataflow_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Java_Examples_Dataflow_Cron/lastCompletedBuild/badge/icon?subject=V1">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Java_Examples_Dataflow_Java11_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Java_Examples_Dataflow_Java11_Cron/lastCompletedBuild/badge/icon?subject=V1+Java11">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java_Examples_Dataflow_V2/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java_Examples_Dataflow_V2/lastCompletedBuild/badge/icon?subject=V2">
</a><br>
</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
</tr>
<tr>
<td>Python</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
</tr>
<tr>
<td>XLang</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
<td>---</td>
</tr>
</tbody>
</table>
Post-Commit SDK/Transform Integration Tests Status (on master branch)
------------------------------------------------------------------------------------------------
<table>
<thead>
<tr>
<th>Go</th>
<th>Java</th>
<th>Python</th>
</tr>
</thead>
<tbody>
<tr>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Go/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Go/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Java/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Java/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Python36/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Python36/lastCompletedBuild/badge/icon?subject=3.6">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Python37/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Python37/lastCompletedBuild/badge/icon?subject=3.7">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PostCommit_Python38/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PostCommit_Python38/lastCompletedBuild/badge/icon?subject=3.8">
</a>
</td>
</tr>
</tbody>
</table>
Pre-Commit Tests Status (on master branch)
------------------------------------------------------------------------------------------------
<table>
<thead>
<tr>
<th>---</th>
<th>Java</th>
<th>Python</th>
<th>Go</th>
<th>Website</th>
<th>Whitespace</th>
<th>Typescript</th>
</tr>
</thead>
<tbody>
<tr>
<td>Non-portable</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Java_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Java_Cron/lastCompletedBuild/badge/icon">
</a><br>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Python_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Python_Cron/lastCompletedBuild/badge/icon?subject=Tests">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_PythonLint_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_PythonLint_Cron/lastCompletedBuild/badge/icon?subject=Lint">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_PythonDocker_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_PythonDocker_Cron/badge/icon?subject=Docker">
</a><br>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_PythonDocs_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_PythonDocs_Cron/badge/icon?subject=Docs">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Go_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Go_Cron/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Website_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Website_Cron/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Whitespace_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Whitespace_Cron/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Typescript_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Typescript_Cron/lastCompletedBuild/badge/icon">
</a>
</td>
</tr>
<tr>
<td>Portable</td>
<td>---</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_Portable_Python_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_Portable_Python_Cron/lastCompletedBuild/badge/icon">
</a>
</td>
<td>
<a href="https://ci-beam.apache.org/job/beam_PreCommit_GoPortable_Cron/lastCompletedBuild/">
<img alt="Build Status" src="https://ci-beam.apache.org/job/beam_PreCommit_GoPortable_Cron/lastCompletedBuild/badge/icon">
</a>
</td>
<td>---</td>
<td>---</td>
<td>---</td>
</tr>
</tbody>
</table>
See [.test-infra/jenkins/README](https://github.com/apache/beam/blob/master/.test-infra/jenkins/README.md) for trigger phrase, status and link of all Jenkins jobs.
GitHub Actions Tests Status (on master branch)
------------------------------------------------------------------------------------------------
[](https://github.com/apache/beam/actions?query=workflow%3A%22Build+python+source+distribution+and+wheels%22+branch%3Amaster+event%3Aschedule)
[](https://github.com/apache/beam/actions?query=workflow%3A%22Python+Tests%22+branch%3Amaster+event%3Aschedule)
[](https://github.com/apache/beam/actions?query=workflow%3A%22Java+Tests%22+branch%3Amaster+event%3Aschedule)
See [CI.md](https://github.com/apache/beam/blob/master/CI.md) for more information about GitHub Actions CI.
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@beam.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
Issue Time Tracking
-------------------
Worklog Id: (was: 653180)
Remaining Estimate: 0h
Time Spent: 10m
> SqlTransform doesn't work on python 3.9
> ---------------------------------------
>
> Key: BEAM-12803
> URL: https://issues.apache.org/jira/browse/BEAM-12803
> Project: Beam
> Issue Type: Bug
> Components: sdk-py-core
> Reporter: sean teeling
> Assignee: Brian Hulette
> Priority: P2
> Time Spent: 10m
> Remaining Estimate: 0h
>
> Working example below -(Is there no way to paste pre-formatted code into jira?!)- (EDIT: I added the appropriate "code" block)
> {code:python}
> import itertools
> import csv
> import io
> import apache_beam as beam
> from apache_beam.dataframe.io import read_csv
> from apache_beam.transforms.sql import SqlTransform
> def parse_csv(val):
> deflower_headers(iterator):
> return itertools.chain([next(iterator).lower()], iterator)
> return csv.DictReader(lower_headers(io.TextIOWrapper(val.open())))
> class BeamTransformBuilder():
> def build(self, pipeline):
> practices = (
> pipeline
> | beam.io.fileio.MatchFiles("data.csv")
> | beam.io.fileio.ReadMatches()
> | beam.Reshuffle()
> | beam.FlatMap(parse_csv)
> | beam.Map(lambda x: beam.Row(id="test-id"))
> | SqlTransform("""
> SELECT
> id
> FROM PCOLLECTION""")
> )
> practices | beam.Map(print)
> def main():
> builder = BeamTransformBuilder()
> with beam.Pipeline('DirectRunner') as p:
> builder.build(p)
> if __name__ == '__main__':
> main()
> {code}
>
> Results in the error:
>
> {code:java}
> File "/usr/local/lib/python3.9/site-packages/apache_beam/typehints/schemas.py", line 185, in typing_to_runner_api
> element_type = typing_to_runner_api(_get_args(type_)[0])
> IndexError: tuple index out of range
> {code}
>
>
> Tested on Python 3.9.6.
>
> Annoyingly, it is difficult to test this out on other python versions. There's no documentation for how to setup a docker container using DirectRunner and running it locally. There's barely any documentation on what python versions are supported. And using pyenv, and pip install apache-beam requires a lot of other downloads that have conflicts when other versions are already installed.
--
This message was sent by Atlassian Jira
(v8.3.4#803005)