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Posted to users@airavata.apache.org by K Yoshimoto <ke...@sdsc.edu> on 2015/04/01 20:58:01 UTC
how to retrieve output from an experiment
Hi,
I can create and launch an experiment with the php example gateway
on the test server, using 0.15, but I don't see how to retrieve
the output. Is there a method in the API for doing this? I'd like
to get stdout, stderr and return code from the command run in the experiment.
Thanks,
Kenneth
Re: how to retrieve output from an experiment
Posted by K Yoshimoto <ke...@sdsc.edu>.
Okay, just email me whenever you get a chance to try it out.
Kenneth
On Wed, Apr 01, 2015 at 03:54:05PM -0400, Suresh Marru wrote:
> Hi Kenneth,
>
> Let me check a python client with a simple /bin/date example so we can get on same page.
>
> Suresh
>
> > On Apr 1, 2015, at 3:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >
> > Suresh,
> >
> > I'd just like to know the appropriate way to retrieve experiment
> > stdout, stderr and return code. If I need to configure that
> > in the experimentModel somewhere that's fine. If there is no method
> > to do this currently, I'll create the JIRA issue.
> >
> > Kenneth
> >
> > On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
> >> Hi Kenneth,
> >>
> >> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
> >>
> >> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
> >>
> >> Thanks,
> >> Suresh
> >>
> >>> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >>>
> >>>
> >>> Hi,
> >>>
> >>> I can create and launch an experiment with the php example gateway
> >>> on the test server, using 0.15, but I don't see how to retrieve
> >>> the output. Is there a method in the API for doing this? I'd like
> >>> to get stdout, stderr and return code from the command run in the experiment.
> >>>
> >>> Thanks,
> >>> Kenneth
Re: how to retrieve output from an experiment
Posted by K Yoshimoto <ke...@sdsc.edu>.
Okay, just email me whenever you get a chance to try it out.
Kenneth
On Wed, Apr 01, 2015 at 03:54:05PM -0400, Suresh Marru wrote:
> Hi Kenneth,
>
> Let me check a python client with a simple /bin/date example so we can get on same page.
>
> Suresh
>
> > On Apr 1, 2015, at 3:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >
> > Suresh,
> >
> > I'd just like to know the appropriate way to retrieve experiment
> > stdout, stderr and return code. If I need to configure that
> > in the experimentModel somewhere that's fine. If there is no method
> > to do this currently, I'll create the JIRA issue.
> >
> > Kenneth
> >
> > On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
> >> Hi Kenneth,
> >>
> >> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
> >>
> >> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
> >>
> >> Thanks,
> >> Suresh
> >>
> >>> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >>>
> >>>
> >>> Hi,
> >>>
> >>> I can create and launch an experiment with the php example gateway
> >>> on the test server, using 0.15, but I don't see how to retrieve
> >>> the output. Is there a method in the API for doing this? I'd like
> >>> to get stdout, stderr and return code from the command run in the experiment.
> >>>
> >>> Thanks,
> >>> Kenneth
how to generate and register ssh keys?
Posted by K Yoshimoto <ke...@sdsc.edu>.
I am trying out the generateAndRegisterSSHKeys method,
with 'php_reference_gateway' and 'kenneth1' as args.
I've run an experiment as 'kenneth1', so I think that's in there.
I'm running into this:
Traceback (most recent call last):
File "/media/scigap/scigap/0.15/airavata/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata-remote", line 239, in <module>
pp.pprint(client.generateAndRegisterSSHKeys(args[0],args[1],))
File "/media/scigap/scigap/0.15/airavata/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py", line 2080, in generateAndRegisterSSHKeys
return self.recv_generateAndRegisterSSHKeys()
File "/media/scigap/scigap/0.15/airavata/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py", line 2109, in recv_generateAndRegisterSSHKeys
raise TApplicationException(TApplicationException.MISSING_RESULT, "generateAndRegisterSSHKeys failed: unknown result");
Has anyone seen this error?
Kenneth
On Wed, Apr 01, 2015 at 03:54:05PM -0400, Suresh Marru wrote:
> Hi Kenneth,
>
> Let me check a python client with a simple /bin/date example so we can get on same page.
>
> Suresh
>
> > On Apr 1, 2015, at 3:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >
> > Suresh,
> >
> > I'd just like to know the appropriate way to retrieve experiment
> > stdout, stderr and return code. If I need to configure that
> > in the experimentModel somewhere that's fine. If there is no method
> > to do this currently, I'll create the JIRA issue.
> >
> > Kenneth
> >
> > On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
> >> Hi Kenneth,
> >>
> >> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
> >>
> >> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
> >>
> >> Thanks,
> >> Suresh
> >>
> >>> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >>>
> >>>
> >>> Hi,
> >>>
> >>> I can create and launch an experiment with the php example gateway
> >>> on the test server, using 0.15, but I don't see how to retrieve
> >>> the output. Is there a method in the API for doing this? I'd like
> >>> to get stdout, stderr and return code from the command run in the experiment.
> >>>
> >>> Thanks,
> >>> Kenneth
how to generate and register ssh keys?
Posted by K Yoshimoto <ke...@sdsc.edu>.
I am trying out the generateAndRegisterSSHKeys method,
with 'php_reference_gateway' and 'kenneth1' as args.
I've run an experiment as 'kenneth1', so I think that's in there.
I'm running into this:
Traceback (most recent call last):
File "/media/scigap/scigap/0.15/airavata/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata-remote", line 239, in <module>
pp.pprint(client.generateAndRegisterSSHKeys(args[0],args[1],))
File "/media/scigap/scigap/0.15/airavata/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py", line 2080, in generateAndRegisterSSHKeys
return self.recv_generateAndRegisterSSHKeys()
File "/media/scigap/scigap/0.15/airavata/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py", line 2109, in recv_generateAndRegisterSSHKeys
raise TApplicationException(TApplicationException.MISSING_RESULT, "generateAndRegisterSSHKeys failed: unknown result");
Has anyone seen this error?
Kenneth
On Wed, Apr 01, 2015 at 03:54:05PM -0400, Suresh Marru wrote:
> Hi Kenneth,
>
> Let me check a python client with a simple /bin/date example so we can get on same page.
>
> Suresh
>
> > On Apr 1, 2015, at 3:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >
> > Suresh,
> >
> > I'd just like to know the appropriate way to retrieve experiment
> > stdout, stderr and return code. If I need to configure that
> > in the experimentModel somewhere that's fine. If there is no method
> > to do this currently, I'll create the JIRA issue.
> >
> > Kenneth
> >
> > On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
> >> Hi Kenneth,
> >>
> >> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
> >>
> >> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
> >>
> >> Thanks,
> >> Suresh
> >>
> >>> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >>>
> >>>
> >>> Hi,
> >>>
> >>> I can create and launch an experiment with the php example gateway
> >>> on the test server, using 0.15, but I don't see how to retrieve
> >>> the output. Is there a method in the API for doing this? I'd like
> >>> to get stdout, stderr and return code from the command run in the experiment.
> >>>
> >>> Thanks,
> >>> Kenneth
Re: how to retrieve output from an experiment
Posted by Suresh Marru <sm...@apache.org>.
Hi Kenneth,
Let me check a python client with a simple /bin/date example so we can get on same page.
Suresh
> On Apr 1, 2015, at 3:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>
> Suresh,
>
> I'd just like to know the appropriate way to retrieve experiment
> stdout, stderr and return code. If I need to configure that
> in the experimentModel somewhere that's fine. If there is no method
> to do this currently, I'll create the JIRA issue.
>
> Kenneth
>
> On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
>> Hi Kenneth,
>>
>> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
>>
>> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
>>
>> Thanks,
>> Suresh
>>
>>> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>>>
>>>
>>> Hi,
>>>
>>> I can create and launch an experiment with the php example gateway
>>> on the test server, using 0.15, but I don't see how to retrieve
>>> the output. Is there a method in the API for doing this? I'd like
>>> to get stdout, stderr and return code from the command run in the experiment.
>>>
>>> Thanks,
>>> Kenneth
Re: how to retrieve output from an experiment
Posted by Suresh Marru <sm...@apache.org>.
Hi Kenneth,
Let me check a python client with a simple /bin/date example so we can get on same page.
Suresh
> On Apr 1, 2015, at 3:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>
> Suresh,
>
> I'd just like to know the appropriate way to retrieve experiment
> stdout, stderr and return code. If I need to configure that
> in the experimentModel somewhere that's fine. If there is no method
> to do this currently, I'll create the JIRA issue.
>
> Kenneth
>
> On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
>> Hi Kenneth,
>>
>> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
>>
>> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
>>
>> Thanks,
>> Suresh
>>
>>> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>>>
>>>
>>> Hi,
>>>
>>> I can create and launch an experiment with the php example gateway
>>> on the test server, using 0.15, but I don't see how to retrieve
>>> the output. Is there a method in the API for doing this? I'd like
>>> to get stdout, stderr and return code from the command run in the experiment.
>>>
>>> Thanks,
>>> Kenneth
Re: how to retrieve output from an experiment
Posted by K Yoshimoto <ke...@sdsc.edu>.
Suresh,
I'd just like to know the appropriate way to retrieve experiment
stdout, stderr and return code. If I need to configure that
in the experimentModel somewhere that's fine. If there is no method
to do this currently, I'll create the JIRA issue.
Kenneth
On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
> Hi Kenneth,
>
> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
>
> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
>
> Thanks,
> Suresh
>
> > On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >
> > Hi,
> >
> > I can create and launch an experiment with the php example gateway
> > on the test server, using 0.15, but I don't see how to retrieve
> > the output. Is there a method in the API for doing this? I'd like
> > to get stdout, stderr and return code from the command run in the experiment.
> >
> > Thanks,
> > Kenneth
Re: how to retrieve output from an experiment
Posted by K Yoshimoto <ke...@sdsc.edu>.
Suresh,
I'd just like to know the appropriate way to retrieve experiment
stdout, stderr and return code. If I need to configure that
in the experimentModel somewhere that's fine. If there is no method
to do this currently, I'll create the JIRA issue.
Kenneth
On Wed, Apr 01, 2015 at 03:14:36PM -0400, Suresh Marru wrote:
> Hi Kenneth,
>
> I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
>
> Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
>
> Thanks,
> Suresh
>
> > On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >
> > Hi,
> >
> > I can create and launch an experiment with the php example gateway
> > on the test server, using 0.15, but I don't see how to retrieve
> > the output. Is there a method in the API for doing this? I'd like
> > to get stdout, stderr and return code from the command run in the experiment.
> >
> > Thanks,
> > Kenneth
Re: how to retrieve output from an experiment
Posted by Suresh Marru <sm...@apache.org>.
Hi Kenneth,
I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
Thanks,
Suresh
> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>
> Hi,
>
> I can create and launch an experiment with the php example gateway
> on the test server, using 0.15, but I don't see how to retrieve
> the output. Is there a method in the API for doing this? I'd like
> to get stdout, stderr and return code from the command run in the experiment.
>
> Thanks,
> Kenneth
Re: how to retrieve output from an experiment
Posted by Suresh Marru <sm...@apache.org>.
Hi Kenneth,
I will try to reproduce this and look into how it can be handled. Just to be clear, you are not redirecting the output to any file and it is supposed to show up on the scheduler output file right? It will be help if you can please write a PBS script for this scenario and illustrate what is expected.
Currently error codes are very implicit and Airavata is not cataloging them. Can you please create a JIRA issue, we we will look into it ASAP.
Thanks,
Suresh
> On Apr 1, 2015, at 2:58 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>
> Hi,
>
> I can create and launch an experiment with the php example gateway
> on the test server, using 0.15, but I don't see how to retrieve
> the output. Is there a method in the API for doing this? I'd like
> to get stdout, stderr and return code from the command run in the experiment.
>
> Thanks,
> Kenneth