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Posted to dev@ctakes.apache.org by Clayton Turner <ca...@g.cofc.edu> on 2014/07/24 20:02:06 UTC
ytex examples
I've been following the usage component guide for ctakes 3.2 and ytex, but
I'm having an issue.
I get to the point where I want to export my data as a bag of words (or
cuis), but the documentation on the wiki seems to be really out of date
when it comes to the exporting for data mining step.
The YTEX home directory doesn't seem to actually be a thing and there's no
fracture example directory with a cui/word folder for the examples anymore.
Is there an updated version of this documentation in the works or can
someone just give me pointers on how to execute the command over the
command prompt (Windows)?
Thank you,
Clayton
Re: ytex examples
Posted by Clayton Turner <ca...@g.cofc.edu>.
Hi again:
This issue is still persisting. I can only find the SparseDataExporterImpl
class outside of the ctakes snapshot and, even using that version, I cannot
get the exporter to work, regardless of the parameters I pass to it.
On Thu, Jul 24, 2014 at 3:18 PM, Clayton Turner <ca...@g.cofc.edu>
wrote:
> Hm, okay, so I've bumped into a slightly different issue.
>
> I've got my export.xml built and put into a directory, but I still can't
> seem to find the sparsedataexportimpl class. My guess is that it needs to
> be added to the java path via the setenv.bat file, but the only reference
> to a built version of this file that I can find is outside of the ctakes
> snapshot that I compiled with maven (so not within the ctakes home
> directory structure).
>
> Should I point there with my java path or is there some other location I'm
> just missing which contains these libraries (maybe they're in a jar that
> I'm somehow not including?)
>
>
> On Thu, Jul 24, 2014 at 2:24 PM, Clayton Turner <ca...@g.cofc.edu>
> wrote:
>
>> Hi,
>>
>> Alright, I planned on using weka, but it might not be a bad idea to just
>> jump in with either R or Python.
>>
>> I'll check out that link.
>>
>> Thanks!
>>
>>
>> On Thu, Jul 24, 2014 at 2:11 PM, vijay garla <vn...@gmail.com> wrote:
>>
>>> Hi Clayton,
>>>
>>> Haven't gotten around to upgrading the docs
>>> look here for examples:
>>>
>>> https://code.google.com/p/ytex/source/browse/#svn%2Ftrunk%2Fworkspace%2Fexamples%2Ffracture
>>>
>>> If you are using R/Matlab/Python it is easy to generate a sparse matrix
>>> directly via database queries, I can give you a few examples
>>>
>>> Best,
>>>
>>> VJ
>>>
>>>
>>> On Thu, Jul 24, 2014 at 8:02 PM, Clayton Turner <ca...@g.cofc.edu>
>>> wrote:
>>>
>>> > I've been following the usage component guide for ctakes 3.2 and ytex,
>>> but
>>> > I'm having an issue.
>>> >
>>> > I get to the point where I want to export my data as a bag of words (or
>>> > cuis), but the documentation on the wiki seems to be really out of date
>>> > when it comes to the exporting for data mining step.
>>> >
>>> > The YTEX home directory doesn't seem to actually be a thing and
>>> there's no
>>> > fracture example directory with a cui/word folder for the examples
>>> anymore.
>>> >
>>> > Is there an updated version of this documentation in the works or can
>>> > someone just give me pointers on how to execute the command over the
>>> > command prompt (Windows)?
>>> >
>>> > Thank you,
>>> > Clayton
>>> >
>>>
>>
>>
>>
>> --
>> --
>> Clayton Turner
>> email: caturner3@g.cofc.edu
>> phone: (843)-424-3784
>> web: claytonturner.blogspot.com
>>
>> -------------------------------------------------------------------------------------------------
>> “When scientifically investigating the natural world, the only thing
>> worse than a blind believer is a seeing denier.”
>> - Neil deGrasse Tyson
>>
>
>
>
> --
> --
> Clayton Turner
> email: caturner3@g.cofc.edu
> phone: (843)-424-3784
> web: claytonturner.blogspot.com
>
> -------------------------------------------------------------------------------------------------
> “When scientifically investigating the natural world, the only thing worse
> than a blind believer is a seeing denier.”
> - Neil deGrasse Tyson
>
--
--
Clayton Turner
email: caturner3@g.cofc.edu
phone: (843)-424-3784
web: claytonturner.blogspot.com
-------------------------------------------------------------------------------------------------
“When scientifically investigating the natural world, the only thing worse
than a blind believer is a seeing denier.”
- Neil deGrasse Tyson
Re: ytex examples
Posted by Clayton Turner <ca...@g.cofc.edu>.
Hm, okay, so I've bumped into a slightly different issue.
I've got my export.xml built and put into a directory, but I still can't
seem to find the sparsedataexportimpl class. My guess is that it needs to
be added to the java path via the setenv.bat file, but the only reference
to a built version of this file that I can find is outside of the ctakes
snapshot that I compiled with maven (so not within the ctakes home
directory structure).
Should I point there with my java path or is there some other location I'm
just missing which contains these libraries (maybe they're in a jar that
I'm somehow not including?)
On Thu, Jul 24, 2014 at 2:24 PM, Clayton Turner <ca...@g.cofc.edu>
wrote:
> Hi,
>
> Alright, I planned on using weka, but it might not be a bad idea to just
> jump in with either R or Python.
>
> I'll check out that link.
>
> Thanks!
>
>
> On Thu, Jul 24, 2014 at 2:11 PM, vijay garla <vn...@gmail.com> wrote:
>
>> Hi Clayton,
>>
>> Haven't gotten around to upgrading the docs
>> look here for examples:
>>
>> https://code.google.com/p/ytex/source/browse/#svn%2Ftrunk%2Fworkspace%2Fexamples%2Ffracture
>>
>> If you are using R/Matlab/Python it is easy to generate a sparse matrix
>> directly via database queries, I can give you a few examples
>>
>> Best,
>>
>> VJ
>>
>>
>> On Thu, Jul 24, 2014 at 8:02 PM, Clayton Turner <ca...@g.cofc.edu>
>> wrote:
>>
>> > I've been following the usage component guide for ctakes 3.2 and ytex,
>> but
>> > I'm having an issue.
>> >
>> > I get to the point where I want to export my data as a bag of words (or
>> > cuis), but the documentation on the wiki seems to be really out of date
>> > when it comes to the exporting for data mining step.
>> >
>> > The YTEX home directory doesn't seem to actually be a thing and there's
>> no
>> > fracture example directory with a cui/word folder for the examples
>> anymore.
>> >
>> > Is there an updated version of this documentation in the works or can
>> > someone just give me pointers on how to execute the command over the
>> > command prompt (Windows)?
>> >
>> > Thank you,
>> > Clayton
>> >
>>
>
>
>
> --
> --
> Clayton Turner
> email: caturner3@g.cofc.edu
> phone: (843)-424-3784
> web: claytonturner.blogspot.com
>
> -------------------------------------------------------------------------------------------------
> “When scientifically investigating the natural world, the only thing worse
> than a blind believer is a seeing denier.”
> - Neil deGrasse Tyson
>
--
--
Clayton Turner
email: caturner3@g.cofc.edu
phone: (843)-424-3784
web: claytonturner.blogspot.com
-------------------------------------------------------------------------------------------------
“When scientifically investigating the natural world, the only thing worse
than a blind believer is a seeing denier.”
- Neil deGrasse Tyson
Re: ytex examples
Posted by Clayton Turner <ca...@g.cofc.edu>.
Hi,
Alright, I planned on using weka, but it might not be a bad idea to just
jump in with either R or Python.
I'll check out that link.
Thanks!
On Thu, Jul 24, 2014 at 2:11 PM, vijay garla <vn...@gmail.com> wrote:
> Hi Clayton,
>
> Haven't gotten around to upgrading the docs
> look here for examples:
>
> https://code.google.com/p/ytex/source/browse/#svn%2Ftrunk%2Fworkspace%2Fexamples%2Ffracture
>
> If you are using R/Matlab/Python it is easy to generate a sparse matrix
> directly via database queries, I can give you a few examples
>
> Best,
>
> VJ
>
>
> On Thu, Jul 24, 2014 at 8:02 PM, Clayton Turner <ca...@g.cofc.edu>
> wrote:
>
> > I've been following the usage component guide for ctakes 3.2 and ytex,
> but
> > I'm having an issue.
> >
> > I get to the point where I want to export my data as a bag of words (or
> > cuis), but the documentation on the wiki seems to be really out of date
> > when it comes to the exporting for data mining step.
> >
> > The YTEX home directory doesn't seem to actually be a thing and there's
> no
> > fracture example directory with a cui/word folder for the examples
> anymore.
> >
> > Is there an updated version of this documentation in the works or can
> > someone just give me pointers on how to execute the command over the
> > command prompt (Windows)?
> >
> > Thank you,
> > Clayton
> >
>
--
--
Clayton Turner
email: caturner3@g.cofc.edu
phone: (843)-424-3784
web: claytonturner.blogspot.com
-------------------------------------------------------------------------------------------------
“When scientifically investigating the natural world, the only thing worse
than a blind believer is a seeing denier.”
- Neil deGrasse Tyson
Re: ytex examples
Posted by vijay garla <vn...@gmail.com>.
Hi Clayton,
Haven't gotten around to upgrading the docs
look here for examples:
https://code.google.com/p/ytex/source/browse/#svn%2Ftrunk%2Fworkspace%2Fexamples%2Ffracture
If you are using R/Matlab/Python it is easy to generate a sparse matrix
directly via database queries, I can give you a few examples
Best,
VJ
On Thu, Jul 24, 2014 at 8:02 PM, Clayton Turner <ca...@g.cofc.edu>
wrote:
> I've been following the usage component guide for ctakes 3.2 and ytex, but
> I'm having an issue.
>
> I get to the point where I want to export my data as a bag of words (or
> cuis), but the documentation on the wiki seems to be really out of date
> when it comes to the exporting for data mining step.
>
> The YTEX home directory doesn't seem to actually be a thing and there's no
> fracture example directory with a cui/word folder for the examples anymore.
>
> Is there an updated version of this documentation in the works or can
> someone just give me pointers on how to execute the command over the
> command prompt (Windows)?
>
> Thank you,
> Clayton
>