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[GitHub] [spark] dongjoon-hyun opened a new pull request #30130: [WIP][SPARK-32354][K8S][TESTS] Re-enable RTestsSuite
dongjoon-hyun opened a new pull request #30130:
URL: https://github.com/apache/spark/pull/30130
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[GitHub] [spark] dongjoon-hyun commented on pull request #30130: [SPARK-33408][SPARK-32354][K8S][R] Use R 4.0 in K8s R image and re-enable RTestsSuite
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on pull request #30130:
URL: https://github.com/apache/spark/pull/30130#issuecomment-724509010
Hmm. It seems that there is another reason. I'll take a look again.
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[GitHub] [spark] HyukjinKwon closed pull request #30130: [SPARK-33408][SPARK-32354][K8S][R] Use R 3.6.3 in K8s R image and re-enable RTestsSuite
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HyukjinKwon closed pull request #30130:
URL: https://github.com/apache/spark/pull/30130
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[GitHub] [spark] dongjoon-hyun commented on pull request #30130: [SPARK-33408][SPARK-32354][K8S][R] Use R 3.6.3 in K8s R image and re-enable RTestsSuite
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dongjoon-hyun commented on pull request #30130:
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Hi, @viirya . Could you review this? This recovers K8s R integration test for Apache Spark 3.1.
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[GitHub] [spark] dongjoon-hyun commented on pull request #30130: [SPARK-33408][SPARK-32354][K8S][R] Use R 4.0 in K8s R image and re-enable RTestsSuite
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dongjoon-hyun commented on pull request #30130:
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Retest this please.
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Hi, @HyukjinKwon
Could you review this again?
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Hi, @viirya . Could you review this? This recovers K8s R integration test for Apache Spark 3.1.
All tests including K8s IT passed.
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* This patch passes all tests.
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* This patch adds no public classes.
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Thank you, @HyukjinKwon .
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[GitHub] [spark] HyukjinKwon commented on a change in pull request #30130: [SPARK-33408][SPARK-32354][K8S][R] Use R 3.6.3 in K8s R image and re-enable RTestsSuite
Posted by GitBox <gi...@apache.org>.
HyukjinKwon commented on a change in pull request #30130:
URL: https://github.com/apache/spark/pull/30130#discussion_r534859502
##########
File path: resource-managers/kubernetes/docker/src/main/dockerfiles/spark/bindings/R/Dockerfile
##########
@@ -25,7 +25,14 @@ USER 0
RUN mkdir ${SPARK_HOME}/R
-RUN apt-get update && apt install -y r-base r-base-dev && rm -rf /var/cache/apt/*
+# Install R 3.6.3 (http://cloud.r-project.org/bin/linux/debian/)
+RUN \
+ echo "deb http://cloud.r-project.org/bin/linux/debian buster-cran35/" >> /etc/apt/sources.list && \
+ apt install -y gnupg && \
+ apt-key adv --keyserver keys.gnupg.net --recv-key 'E19F5F87128899B192B1A2C2AD5F960A256A04AF' && \
Review comment:
@dongjoon-hyun, I am very sorry to leave a comment late like this but have you ever faced an error message such as:
```
Setting up gpgsm (2.2.12-1+deb10u1) ...
Setting up dirmngr (2.2.12-1+deb10u1) ...
Setting up gpg-wks-server (2.2.12-1+deb10u1) ...
Setting up gpg-wks-client (2.2.12-1+deb10u1) ...
Setting up gnupg (2.2.12-1+deb10u1) ...
Processing triggers for libc-bin (2.28-10) ...
Warning: apt-key output should not be parsed (stdout is not a terminal)
Executing: /tmp/apt-key-gpghome.XSaWDqGyN4/gpg.1.sh --keyserver keys.gnupg.net --recv-key E19F5F87128899B192B1A2C2AD5F960A256A04AF
gpg: keyserver receive failed: No name
The command '/bin/sh -c echo "deb http://cloud.r-project.org/bin/linux/debian buster-cran35/" >> /etc/apt/sources.list && apt install -y gnupg && apt-key adv --keyserver keys.gnupg.net --recv-key 'E19F5F87128899B192B1A2C2AD5F960A256A04AF' && apt-get update && apt install -y -t buster-cran35 r-base r-base-dev && rm -rf /var/cache/apt/*' returned a non-zero code: 2
Failed to build SparkR Docker image, please refer to Docker build output for details.
[ERROR] Command execution failed.
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1)
at org.apache.commons.exec.DefaultExecutor.executeInternal (DefaultExecutor.java:404)
at org.apache.commons.exec.DefaultExecutor.execute (DefaultExecutor.java:166)
at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:804)
at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:751)
at org.codehaus.mojo.exec.ExecMojo.execute (ExecMojo.java:313)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406)
at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347)
```
before when you run IT tests locally?
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Merged to master.
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* This patch passes all tests.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] [spark] dongjoon-hyun commented on a change in pull request #30130: [SPARK-33408][SPARK-32354][K8S][R] Use R 3.6.3 in K8s R image and re-enable RTestsSuite
Posted by GitBox <gi...@apache.org>.
dongjoon-hyun commented on a change in pull request #30130:
URL: https://github.com/apache/spark/pull/30130#discussion_r535434225
##########
File path: resource-managers/kubernetes/docker/src/main/dockerfiles/spark/bindings/R/Dockerfile
##########
@@ -25,7 +25,14 @@ USER 0
RUN mkdir ${SPARK_HOME}/R
-RUN apt-get update && apt install -y r-base r-base-dev && rm -rf /var/cache/apt/*
+# Install R 3.6.3 (http://cloud.r-project.org/bin/linux/debian/)
+RUN \
+ echo "deb http://cloud.r-project.org/bin/linux/debian buster-cran35/" >> /etc/apt/sources.list && \
+ apt install -y gnupg && \
+ apt-key adv --keyserver keys.gnupg.net --recv-key 'E19F5F87128899B192B1A2C2AD5F960A256A04AF' && \
Review comment:
No, I didn't see that. Is it a DNS error?
> gpg: keyserver receive failed: No name
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Retest this please
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Thank you, @HyukjinKwon and @viirya !
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