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Posted to commits@uima.apache.org by sc...@apache.org on 2008/08/28 23:28:16 UTC

svn commit: r689997 [32/32] - in /incubator/uima/uimaj/trunk/uima-docbooks: ./ src/ src/docbook/overview_and_setup/ src/docbook/references/ src/docbook/tools/ src/docbook/tutorials_and_users_guides/ src/docbook/uima/organization/ src/olink/references/

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/pdf-target.db
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/pdf-target.db?rev=689997&r1=689996&r2=689997&view=diff
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--- incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/pdf-target.db (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/pdf-target.db Thu Aug 28 14:28:14 2008
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-<div element="book" href="#d0e2" number="" lang="en"><ttl>UIMA References</ttl><xreftext>UIMA References</xreftext><div element="chapter" href="#ugr.ref.javadocs" number="1" targetptr="ugr.ref.javadocs"><ttl>Javadocs</ttl><xreftext>Chapter 1, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">Javadocs</fo:inline></xreftext><div element="section" href="#ugr.ref.javadocs.libraries" number="1.1" targetptr="ugr.ref.javadocs.libraries"><ttl>Using named Eclipse User Libraries</ttl><xreftext>Section 1.1, “Using named Eclipse User Libraries”</xreftext></div></div><div element="chapter" href="#ugr.ref.xml.component_descriptor" number="2" targetptr="ugr.ref.xml.component_descriptor"><ttl>Component Descriptor Reference</ttl><xreftext>Chapter 2, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">Component Descriptor Reference</fo:inli
 ne></xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.notation" number="2.1" targetptr="ugr.ref.xml.component_descriptor.notation"><ttl>Notation</ttl><xreftext>Section 2.1, “Notation”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.imports" number="2.2" targetptr="ugr.ref.xml.component_descriptor.imports"><ttl>Imports</ttl><xreftext>Section 2.2, “Imports”</xreftext><obj element="para" href="#ugr.ref.xml.component_descriptor.datapath" number="" targetptr="ugr.ref.xml.component_descriptor.datapath"><ttl>???TITLE???</ttl><xreftext>Section 2.2, “Imports”</xreftext></obj></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system" number="2.3" targetptr="ugr.ref.xml.component_descriptor.type_system"><ttl>Type System Descriptors</ttl><xreftext>Section 2.3, “Type System Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.ty
 pe_system.imports" number="2.3.1" targetptr="ugr.ref.xml.component_descriptor.type_system.imports"><ttl>Imports</ttl><xreftext>Section 2.3.1, “Imports”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.types" number="2.3.2" targetptr="ugr.ref.xml.component_descriptor.type_system.types"><ttl>Types</ttl><xreftext>Section 2.3.2, “Types”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.features" number="2.3.3" targetptr="ugr.ref.xml.component_descriptor.type_system.features"><ttl>Features</ttl><xreftext>Section 2.3.3, “Features”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.string_subtypes" number="2.3.4" targetptr="ugr.ref.xml.component_descriptor.type_system.string_subtypes"><ttl>String Subtypes</ttl><xreftext>Section 2.3.4, “String Subtypes”</xreftext></div></div><div element="section" href="#ugr.re
 f.xml.component_descriptor.aes" number="2.4" targetptr="ugr.ref.xml.component_descriptor.aes"><ttl>Analysis Engine Descriptors</ttl><xreftext>Section 2.4, “Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive" number="2.4.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive"><ttl>Primitive Analysis Engine Descriptors</ttl><xreftext>Section 2.4.1, “Primitive Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.basic" number="2.4.1.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.basic"><ttl>Basic Structure</ttl><xreftext>Section 2.4.1.1, “Basic Structure”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.metadata" number="2.4.1.2" targetptr="ugr.ref.xml.component_descriptor.aes.metadata"><ttl>Analysis Engine MetaData</ttl><xreftext>Section 2.4.1.2, “Anal
 ysis Engine MetaData”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration" number="2.4.1.3" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration"><ttl>Configuration Parameter Declaration</ttl><xreftext>Section 2.4.1.3, “Configuration Parameter Declaration”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example"><ttl>Example</ttl><xreftext>the section called “Example”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings" number="2.4.1.4" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings"><ttl>Configuration Parameter Settings</ttl><xreftext>Section 2.4.1.4, “Configuration Parameter
  Settings”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example"><ttl>Example</ttl><xreftext>the section called “Example”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_system" number="2.4.1.5" targetptr="ugr.ref.xml.component_descriptor.aes.type_system"><ttl>Type System Definition</ttl><xreftext>Section 2.4.1.5, “Type System Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_priority" number="2.4.1.6" targetptr="ugr.ref.xml.component_descriptor.aes.type_priority"><ttl>Type Priority Definition</ttl><xreftext>Section 2.4.1.6, “Type Priority Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.index" number="2.4.1.7" targetptr="ugr.ref.xml
 .component_descriptor.aes.index"><ttl>Index Definition</ttl><xreftext>Section 2.4.1.7, “Index Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.capabilities" number="2.4.1.8" targetptr="ugr.ref.xml.component_descriptor.aes.capabilities"><ttl>Capabilities</ttl><xreftext>Section 2.4.1.8, “Capabilities”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.operational_properties" number="2.4.1.9" targetptr="ugr.ref.xml.component_descriptor.aes.operational_properties"><ttl>OperationalProperties</ttl><xreftext>Section 2.4.1.9, “OperationalProperties”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies" number="2.4.1.10" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies"><ttl>External Resource Dependencies</ttl><xreftext>Section 2.4.1.10, “External Reso
 urce Dependencies”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration" number="2.4.1.11" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration"><ttl>Resource Manager Configuration</ttl><xreftext>Section 2.4.1.11, “Resource Manager Configuration”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.environment_variable_references" number="2.4.1.12" targetptr="ugr.ref.xml.component_descriptor.aes.environment_variable_references"><ttl>Environment Variable References</ttl><xreftext>Section 2.4.1.12, “Environment Variable References”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate" number="2.4.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate"><ttl>Aggregate Analysis Engine Descriptors</ttl><xreftext>Section 2.4.2, “Aggregate Analysis Engine Des
 criptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.delegates" number="2.4.2.1" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.delegates"><ttl>Delegate Analysis Engine Specifiers</ttl><xreftext>Section 2.4.2.1, “Delegate Analysis Engine Specifiers”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller" number="2.4.2.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller"><ttl>FlowController</ttl><xreftext>Section 2.4.2.2, “FlowController”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints" number="2.4.2.3" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints"><ttl>FlowConstraints</ttl><xreftext>Section 2.4.2.3, “FlowConstraints”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_co
 nstraints.fixed_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.fixed_flow"><ttl>Fixed Flow</ttl><xreftext>the section called “Fixed Flow”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow"><ttl>Capability Language Flow</ttl><xreftext>the section called “Capability Language Flow”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides" number="2.4.2.4" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides"><ttl>Configuration Parameter Overrides</ttl><xreftext>Section 2.4.2.4, “Configuration Parameter Overrides”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.ag
 gregate.external_resource_bindings" number="2.4.2.5" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.external_resource_bindings"><ttl>External Resource Bindings</ttl><xreftext>Section 2.4.2.5, “External Resource Bindings”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings" number="2.4.2.6" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings"><ttl>Sofa Mappings</ttl><xreftext>Section 2.4.2.6, “Sofa Mappings”</xreftext></div></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.flow_controller" number="2.5" targetptr="ugr.ref.xml.component_descriptor.flow_controller"><ttl>Flow Controller Descriptors</ttl><xreftext>Section 2.5, “Flow Controller Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts" number="2.6" targetptr="ugr.ref.xml.component_descriptor.collection_proc
 essing_parts"><ttl>Collection Processing Component Descriptors</ttl><xreftext>Section 2.6, “Collection Processing Component Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader" number="2.6.1" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader"><ttl>Collection Reader Descriptors</ttl><xreftext>Section 2.6.1, “Collection Reader Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer" number="2.6.2" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer"><ttl>CAS Initializer Descriptors (deprecated)</ttl><xreftext>Section 2.6.2, “CAS Initializer Descriptors (deprecated)”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer" number="2.6.3" targetp
 tr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer"><ttl>CAS Consumer Descriptors</ttl><xreftext>Section 2.6.3, “CAS Consumer Descriptors”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.service_client" number="2.7" targetptr="ugr.ref.xml.component_descriptor.service_client"><ttl>Service Client Descriptors</ttl><xreftext>Section 2.7, “Service Client Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.custom_resource_specifiers" number="2.8" targetptr="ugr.ref.xml.component_descriptor.custom_resource_specifiers"><ttl>Custom Resource Specifiers</ttl><xreftext>Section 2.8, “Custom Resource Specifiers”</xreftext></div></div><div element="chapter" href="#ugr.ref.xml.cpe_descriptor" number="3" targetptr="ugr.ref.xml.cpe_descriptor"><ttl>Collection Processing Engine Descriptor Reference</ttl><xreftext>Chapter 3, <fo:inline xmlns:fo="http:
 //www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">Collection Processing Engine Descriptor Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.overview" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview"><ttl>CPE Overview</ttl><xreftext>Section 3.1, “CPE Overview”</xreftext><obj element="figure" href="#ugr.ref.xml.cpe_descriptor.overview.fig.runtime" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview.fig.runtime"><ttl>CPE Runtime Overview</ttl><xreftext>Figure 3.1, “CPE Runtime Overview”</xreftext></obj></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.notation" number="3.2" targetptr="ugr.ref.xml.cpe_descriptor.notation"><ttl>Notation</ttl><xreftext>Section 3.2, “Notation”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.imports" number="3.3" targetptr="ugr.ref.xml.cpe_descriptor.imports"><ttl>Imports</
 ttl><xreftext>Section 3.3, “Imports”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor" number="3.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor"><ttl>CPE Descriptor Overview</ttl><xreftext>Section 3.4, “CPE Descriptor Overview”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader" number="3.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader"><ttl>Collection Reader</ttl><xreftext>Section 3.5, “Collection Reader”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling" number="3.5.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling"><ttl>Error handling for Collection Readers</ttl><xreftext>Section 3.5.1, “Error handling for Collection Readers”</xreftext></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.c
 as_processors" number="3.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors"><ttl>CAS Processors</ttl><xreftext>Section 3.6, “CAS Processors”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual" number="3.6.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual"><ttl>Specifying an Individual CAS Processor</ttl><xreftext>Section 3.6.1, “Specifying an Individual CAS Processor”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor" number="3.6.1.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor"><ttl>&lt;descriptor&gt; Element</ttl><xreftext>Section 3.6.1.1, “&lt;descriptor&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings" number="3.6.1.2" targetp
 tr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings"><ttl>&lt;configurationParameterSettings&gt; Element</ttl><xreftext>Section 3.6.1.2, “&lt;configurationParameterSettings&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings" number="3.6.1.3" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings"><ttl>&lt;sofaNameMappings&gt; Element</ttl><xreftext>Section 3.6.1.3, “&lt;sofaNameMappings&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process" number="3.6.1.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process"><ttl>&lt;runInSeparateProcess&gt; Element</ttl><xreftext>Section 3.6.1.4, “&lt;runInSeparateProcess&gt; Element”</xreftext></div><div elem
 ent="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters" number="3.6.1.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters"><ttl>&lt;deploymentParameters&gt; Element</ttl><xreftext>Section 3.6.1.5, “&lt;deploymentParameters&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter" number="3.6.1.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter"><ttl>&lt;filter&gt; Element</ttl><xreftext>Section 3.6.1.6, “&lt;filter&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling" number="3.6.1.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling"><ttl>&lt;errorHandling&gt; Element</ttl><xreftext>Section 3.6.1.7, “&lt;errorHandl
 ing&gt; Element”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action" number="" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action"><ttl>Retry action taken on a timeout</ttl><xreftext>the section called “Retry action taken on a timeout”</xreftext></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint" number="3.6.1.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint"><ttl>&lt;checkpoint&gt; Element</ttl><xreftext>Section 3.6.1.8, “&lt;checkpoint&gt; Element”</xreftext></div></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters" number="3.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters"><ttl>CPE Operational Parameters</ttl><xreftex
 t>Section 3.7, “CPE Operational Parameters”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration" number="3.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration"><ttl>Resource Manager Configuration</ttl><xreftext>Section 3.8, “Resource Manager Configuration”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.example" number="3.9" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.example"><ttl>Example CPE Descriptor</ttl><xreftext>Section 3.9, “Example CPE Descriptor”</xreftext></div></div><div element="chapter" href="#ugr.ref.cas" number="4" targetptr="ugr.ref.cas"><ttl>CAS Reference</ttl><xreftext>Chapter 4, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">CAS Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.cas.javadocs"
  number="4.1" targetptr="ugr.ref.cas.javadocs"><ttl>Javadocs</ttl><xreftext>Section 4.1, “Javadocs”</xreftext></div><div element="section" href="#ugr.ref.cas.overview" number="4.2" targetptr="ugr.ref.cas.overview"><ttl>CAS Overview</ttl><xreftext>Section 4.2, “CAS Overview”</xreftext><div element="section" href="#ugr.ref.cas.type_system" number="4.2.1" targetptr="ugr.ref.cas.type_system"><ttl>The Type System</ttl><xreftext>Section 4.2.1, “The Type System”</xreftext></div><div element="section" href="#ugr.ref.cas.creating_accessing_manipulating_data" number="4.2.2" targetptr="ugr.ref.cas.creating_accessing_manipulating_data"><ttl>Creating, accessing and manipulating data</ttl><xreftext>Section 4.2.2, “Creating/Accessing/Changing data”</xreftext></div><div element="section" href="#ugr.ref.cas.creating_using_indexes" number="4.2.3" targetptr="ugr.ref.cas.creating_using_indexes"><ttl>Creating and using indexes</ttl><xreftext>Se
 ction 4.2.3, “Creating and using indexes”</xreftext></div></div><div element="section" href="#ugr.ref.cas.builtin_types" number="4.3" targetptr="ugr.ref.cas.builtin_types"><ttl>Built-in CAS Types</ttl><xreftext>Section 4.3, “Built-in CAS Types”</xreftext><obj element="para" href="#ugr.ref.cas.document_annotation" number="" targetptr="ugr.ref.cas.document_annotation"><ttl>???TITLE???</ttl><xreftext>Section 4.3, “Built-in CAS Types”</xreftext></obj></div><div element="section" href="#ugr.ref.cas.accessing_the_type_system" number="4.4" targetptr="ugr.ref.cas.accessing_the_type_system"><ttl>Accessing the type system</ttl><xreftext>Section 4.4, “Accessing the type system”</xreftext><div element="section" href="#ugr.ref.cas.type_system.printer_example" number="4.4.1" targetptr="ugr.ref.cas.type_system.printer_example"><ttl>TypeSystemPrinter example</ttl><xreftext>Section 4.4.1, “TypeSystemPrinter example”</xreftext><
 /div><div element="section" href="#ugr.ref.cas.cas_apis_create_modify_feature_structures" number="4.4.2" targetptr="ugr.ref.cas.cas_apis_create_modify_feature_structures"><ttl>Using the CAS APIs to create and modify feature structures</ttl><xreftext>Section 4.4.2, “Using CAS APIs: Feature Structures”</xreftext></div></div><div element="section" href="#ugr.ref.cas.creating_feature_structures" number="4.5" targetptr="ugr.ref.cas.creating_feature_structures"><ttl>Creating feature structures</ttl><xreftext>Section 4.5, “Creating feature structures”</xreftext></div><div element="section" href="#ugr.ref.cas.accessing_modifying_features_of_feature_structures" number="4.6" targetptr="ugr.ref.cas.accessing_modifying_features_of_feature_structures"><ttl>Accessing or modifying features of feature structures</ttl><xreftext>Section 4.6, “Accessing or modifying Features”</xreftext></div><div element="section" href="#ugr.ref.cas.indexes_and_iterators"
  number="4.7" targetptr="ugr.ref.cas.indexes_and_iterators"><ttl>Indexes and Iterators</ttl><xreftext>Section 4.7, “Indexes and Iterators”</xreftext><div element="section" href="#ugr.ref.cas.index.built_in_indexes" number="4.7.1" targetptr="ugr.ref.cas.index.built_in_indexes"><ttl>Built-in Indexes</ttl><xreftext>Section 4.7.1, “Built-in Indexes”</xreftext></div><div element="section" href="#ugr.ref.cas.index.adding_to_indexes" number="4.7.2" targetptr="ugr.ref.cas.index.adding_to_indexes"><ttl>Adding Feature Structures to the Indexes</ttl><xreftext>Section 4.7.2, “Adding Feature Structures to the Indexes”</xreftext></div><div element="section" href="#ugr.ref.cas.index.iterators" number="4.7.3" targetptr="ugr.ref.cas.index.iterators"><ttl>Iterators</ttl><xreftext>Section 4.7.3, “Iterators”</xreftext></div><div element="section" href="#ugr.ref.cas.index.annotation_index" number="4.7.4" targetptr="ugr.ref.cas.index.annotation_
 index"><ttl>Special iterators for Annotation types</ttl><xreftext>Section 4.7.4, “Special iterators for Annotation types”</xreftext></div><div element="section" href="#ugr.ref.cas.index.constraints_and_filtered_iterators" number="4.7.5" targetptr="ugr.ref.cas.index.constraints_and_filtered_iterators"><ttl>Constraints and Filtered iterators</ttl><xreftext>Section 4.7.5, “Constraints and Filtered iterators”</xreftext></div></div><div element="section" href="#ugr.ref.cas.guide_to_javadocs" number="4.8" targetptr="ugr.ref.cas.guide_to_javadocs"><ttl>The CAS API's – a guide to the Javadocs</ttl><xreftext>Section 4.8, “CAS API's Javadocs”</xreftext><div element="section" href="#ugr.ref.cas.javadocs.cas_package" number="4.8.1" targetptr="ugr.ref.cas.javadocs.cas_package"><ttl>APIs in the CAS package</ttl><xreftext>Section 4.8.1, “APIs in the CAS package”</xreftext><obj element="figure" href="#ugr.ref.cas.fig.api_hierarchy" nu
 mber="4.1" targetptr="ugr.ref.cas.fig.api_hierarchy"><ttl>CAS Object hierarchy</ttl><xreftext>Figure 4.1, “CAS Object hierarchy”</xreftext></obj></div></div></div><div element="chapter" href="#ugr.ref.jcas" number="5" targetptr="ugr.ref.jcas"><ttl>JCas Reference</ttl><xreftext>Chapter 5, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">JCas Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.jcas.name_spaces" number="5.1" targetptr="ugr.ref.jcas.name_spaces"><ttl>Name Spaces</ttl><xreftext>Section 5.1, “Name Spaces”</xreftext></div><div element="section" href="#ugr.ref.jcas.use_of_description" number="5.2" targetptr="ugr.ref.jcas.use_of_description"><ttl>XML description element</ttl><xreftext>Section 5.2, “Use of XML Description”</xreftext></div><div element="section" href="#ugr.ref.jcas.mapping_built_ins" number="5.3" targetptr="ugr.ref.jcas.mapp
 ing_built_ins"><ttl>Mapping built-in CAS types to Java types</ttl><xreftext>Section 5.3, “Mapping built-in CAS types to Java types”</xreftext></div><div element="section" href="#ugr.ref.jcas.augmenting_generated_code" number="5.4" targetptr="ugr.ref.jcas.augmenting_generated_code"><ttl>Augmenting the generated Java Code</ttl><xreftext>Section 5.4, “Augmenting the generated Java Code”</xreftext><div element="section" href="#ugr.ref.jcas.keeping_augmentations_when_regenerating" number="5.4.1" targetptr="ugr.ref.jcas.keeping_augmentations_when_regenerating"><ttl>Keeping hand-coded augmentations when regenerating</ttl><xreftext>Section 5.4.1, “Keeping hand-coded augmentations when regenerating”</xreftext></div><div element="section" href="#ugr.ref.jcas.additional_constructors" number="5.4.2" targetptr="ugr.ref.jcas.additional_constructors"><ttl>Additional Constructors</ttl><xreftext>Section 5.4.2, “Additional Constructors”</xre
 ftext><div element="section" href="#ugr.ref.jcas.using_readobject" number="5.4.2.1" targetptr="ugr.ref.jcas.using_readobject"><ttl>Using readObject</ttl><xreftext>Section 5.4.2.1, “Using readObject”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.modifying_generated_items" number="5.4.3" targetptr="ugr.ref.jcas.modifying_generated_items"><ttl>Modifying generated items</ttl><xreftext>Section 5.4.3, “Modifying generated items”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.merging_types_from_other_specs" number="5.5" targetptr="ugr.ref.jcas.merging_types_from_other_specs"><ttl>Merging types</ttl><xreftext>Section 5.5, “Merging Types”</xreftext><div element="section" href="#ugr.ref.jcas.merging_types.aggregates_and_cpes" number="5.5.1" targetptr="ugr.ref.jcas.merging_types.aggregates_and_cpes"><ttl>Aggregate AEs and CPEs as sources of types</ttl><xreftext>Section 5.5.1, “Aggregate AEs and CPEs as 
 sources of types”</xreftext></div><div element="section" href="#ugr.ref.jcas.merging_types.jcasgen_support" number="5.5.2" targetptr="ugr.ref.jcas.merging_types.jcasgen_support"><ttl>JCasGen support for type merging</ttl><xreftext>Section 5.5.2, “JCasGen support for type merging”</xreftext></div><div element="section" href="#ugr.ref.jcas.impact_of_type_merging_on_composability" number="5.5.3" targetptr="ugr.ref.jcas.impact_of_type_merging_on_composability"><ttl>Impact of Type Merging on Composability of Annotators</ttl><xreftext>Section 5.5.3, “Type Merging impacts on Composability”</xreftext></div><div element="section" href="#ugr.ref.jcas.documentannotation_issues" number="5.5.4" targetptr="ugr.ref.jcas.documentannotation_issues"><ttl>Adding Features to DocumentAnnotation</ttl><xreftext>Section 5.5.4, “Adding Features to DocumentAnnotation”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.using_within_an_annotator
 " number="5.6" targetptr="ugr.ref.jcas.using_within_an_annotator"><ttl>Using JCas within an Annotator</ttl><xreftext>Section 5.6, “Using JCas within an Annotator”</xreftext><div element="section" href="#ugr.ref.jcas.new_instances" number="5.6.1" targetptr="ugr.ref.jcas.new_instances"><ttl>Creating new instances using the Java “new” operator</ttl><xreftext>Section 5.6.1, “Creating new instances”</xreftext></div><div element="section" href="#ugr.ref.jcas.getters_and_setters" number="5.6.2" targetptr="ugr.ref.jcas.getters_and_setters"><ttl>Getters and Setters</ttl><xreftext>Section 5.6.2, “Getters and Setters”</xreftext></div><div element="section" href="#ugr.ref.jcas.obtaining_refs_to_indexes" number="5.6.3" targetptr="ugr.ref.jcas.obtaining_refs_to_indexes"><ttl>Obtaining references to Indexes</ttl><xreftext>Section 5.6.3, “Obtaining references to Indexes”</xreftext></div><div element="section" href="#ugr.ref.jcas.
 adding_removing_instances_to_indexes" number="5.6.4" targetptr="ugr.ref.jcas.adding_removing_instances_to_indexes"><ttl>Adding (and removing) instances to (from) indexes</ttl><xreftext>Section 5.6.4, “Updating Indexes”</xreftext></div><div element="section" href="#ugr.ref.jcas.using_iterators" number="5.6.5" targetptr="ugr.ref.jcas.using_iterators"><ttl>Using Iterators</ttl><xreftext>Section 5.6.5, “Using Iterators”</xreftext></div><div element="section" href="#ugr.ref.jcas.class_loaders" number="5.6.6" targetptr="ugr.ref.jcas.class_loaders"><ttl>Class Loaders in UIMA</ttl><xreftext>Section 5.6.6, “Class Loaders in UIMA”</xreftext><div element="section" href="#ugr.ref.jcas.class_loaders.optional" number="5.6.6.1" targetptr="ugr.ref.jcas.class_loaders.optional"><ttl>Use of Class Loaders is optional</ttl><xreftext>Section 5.6.6.1, “Use of Class Loaders is optional”</xreftext></div></div><div element="section" href="#ugr.ref.j
 cas.accessing_jcas_objects_outside_uima_components" number="5.6.7" targetptr="ugr.ref.jcas.accessing_jcas_objects_outside_uima_components"><ttl>Issues accessing JCas objects outside of UIMA Engine Components</ttl><xreftext>Section 5.6.7, “Issues accessing JCas objects outside of UIMA Engine Components”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.setting_up_classpath" number="5.7" targetptr="ugr.ref.jcas.setting_up_classpath"><ttl>Setting up Classpath for JCas</ttl><xreftext>Section 5.7, “Setting up Classpath for JCas”</xreftext></div><div element="section" href="#ugr.ref.jcas.pear_support" number="5.8" targetptr="ugr.ref.jcas.pear_support"><ttl>PEAR isolation</ttl><xreftext>Section 5.8, “PEAR isolation”</xreftext></div></div><div element="chapter" href="#ugr.ref.pear" number="6" targetptr="ugr.ref.pear"><ttl>PEAR Reference</ttl><xreftext>Chapter 6, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xli
 nk="http://www.w3.org/1999/xlink" font-style="italic">PEAR Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.pear.packaging_a_component" number="6.1" targetptr="ugr.ref.pear.packaging_a_component"><ttl>Packaging a UIMA component</ttl><xreftext>Section 6.1, “Packaging a UIMA component”</xreftext><div element="section" href="#ugr.ref.pear.creating_pear_structure" number="6.1.1" targetptr="ugr.ref.pear.creating_pear_structure"><ttl>Creating the PEAR structure</ttl><xreftext>Section 6.1.1, “Creating the PEAR structure”</xreftext><obj element="figure" href="#ugr.ref.pear.fig.pear_structure" number="6.1" targetptr="ugr.ref.pear.fig.pear_structure"><ttl>The PEAR Structure</ttl><xreftext>Figure 6.1, “The PEAR Structure”</xreftext></obj></div><div element="section" href="#ugr.ref.pear.populating_pear_structure" number="6.1.2" targetptr="ugr.ref.pear.populating_pear_structure"><ttl>Populating the PEAR structure</ttl><xreftext>
 Section 6.1.2, “Populating the PEAR structure”</xreftext><div element="section" href="#ugr.ref.pear.package_type.standard" number="6.1.2.1" targetptr="ugr.ref.pear.package_type.standard"><ttl>Standard Type</ttl><xreftext>Section 6.1.2.1, “Standard Type”</xreftext></div><div element="section" href="#ugr.ref.pear.package_type.service" number="6.1.2.2" targetptr="ugr.ref.pear.package_type.service"><ttl>Service Type</ttl><xreftext>Section 6.1.2.2, “Service Type”</xreftext></div><div element="section" href="#ugr.ref.pear.package_type.network" number="6.1.2.3" targetptr="ugr.ref.pear.package_type.network"><ttl>Network Type</ttl><xreftext>Section 6.1.2.3, “Network Type”</xreftext></div></div><div element="section" href="#ugr.ref.pear.creating_installation_descriptor" number="6.1.3" targetptr="ugr.ref.pear.creating_installation_descriptor"><ttl>Creating the installation descriptor</ttl><xreftext>Section 6.1.3, “Creating the
  installation descriptor”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor" number="6.1.4" targetptr="ugr.ref.pear.installation_descriptor"><ttl>
+<div element="book" href="#d0e2" number="" lang="en"><ttl>UIMA References</ttl><xreftext>UIMA References</xreftext><div element="chapter" href="#ugr.ref.javadocs" number="1" targetptr="ugr.ref.javadocs"><ttl>Javadocs</ttl><xreftext>Chapter 1, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">Javadocs</fo:inline></xreftext><div element="section" href="#ugr.ref.javadocs.libraries" number="1.1" targetptr="ugr.ref.javadocs.libraries"><ttl>Using named Eclipse User Libraries</ttl><xreftext>Section 1.1, “Using named Eclipse User Libraries”</xreftext></div></div><div element="chapter" href="#ugr.ref.xml.component_descriptor" number="2" targetptr="ugr.ref.xml.component_descriptor"><ttl>Component Descriptor Reference</ttl><xreftext>Chapter 2, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">Component Descriptor Reference</fo:inli
 ne></xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.notation" number="2.1" targetptr="ugr.ref.xml.component_descriptor.notation"><ttl>Notation</ttl><xreftext>Section 2.1, “Notation”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.imports" number="2.2" targetptr="ugr.ref.xml.component_descriptor.imports"><ttl>Imports</ttl><xreftext>Section 2.2, “Imports”</xreftext><obj element="para" href="#ugr.ref.xml.component_descriptor.datapath" number="" targetptr="ugr.ref.xml.component_descriptor.datapath"><ttl>???TITLE???</ttl><xreftext>Section 2.2, “Imports”</xreftext></obj></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system" number="2.3" targetptr="ugr.ref.xml.component_descriptor.type_system"><ttl>Type System Descriptors</ttl><xreftext>Section 2.3, “Type System Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.ty
 pe_system.imports" number="2.3.1" targetptr="ugr.ref.xml.component_descriptor.type_system.imports"><ttl>Imports</ttl><xreftext>Section 2.3.1, “Imports”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.types" number="2.3.2" targetptr="ugr.ref.xml.component_descriptor.type_system.types"><ttl>Types</ttl><xreftext>Section 2.3.2, “Types”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.features" number="2.3.3" targetptr="ugr.ref.xml.component_descriptor.type_system.features"><ttl>Features</ttl><xreftext>Section 2.3.3, “Features”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.string_subtypes" number="2.3.4" targetptr="ugr.ref.xml.component_descriptor.type_system.string_subtypes"><ttl>String Subtypes</ttl><xreftext>Section 2.3.4, “String Subtypes”</xreftext></div></div><div element="section" href="#ugr.re
 f.xml.component_descriptor.aes" number="2.4" targetptr="ugr.ref.xml.component_descriptor.aes"><ttl>Analysis Engine Descriptors</ttl><xreftext>Section 2.4, “Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive" number="2.4.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive"><ttl>Primitive Analysis Engine Descriptors</ttl><xreftext>Section 2.4.1, “Primitive Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.basic" number="2.4.1.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.basic"><ttl>Basic Structure</ttl><xreftext>Section 2.4.1.1, “Basic Structure”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.metadata" number="2.4.1.2" targetptr="ugr.ref.xml.component_descriptor.aes.metadata"><ttl>Analysis Engine MetaData</ttl><xreftext>Section 2.4.1.2, “Anal
 ysis Engine MetaData”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration" number="2.4.1.3" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration"><ttl>Configuration Parameter Declaration</ttl><xreftext>Section 2.4.1.3, “Configuration Parameter Declaration”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example"><ttl>Example</ttl><xreftext>the section called “Example”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings" number="2.4.1.4" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings"><ttl>Configuration Parameter Settings</ttl><xreftext>Section 2.4.1.4, “Configuration Parameter
  Settings”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example"><ttl>Example</ttl><xreftext>the section called “Example”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_system" number="2.4.1.5" targetptr="ugr.ref.xml.component_descriptor.aes.type_system"><ttl>Type System Definition</ttl><xreftext>Section 2.4.1.5, “Type System Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_priority" number="2.4.1.6" targetptr="ugr.ref.xml.component_descriptor.aes.type_priority"><ttl>Type Priority Definition</ttl><xreftext>Section 2.4.1.6, “Type Priority Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.index" number="2.4.1.7" targetptr="ugr.ref.xml
 .component_descriptor.aes.index"><ttl>Index Definition</ttl><xreftext>Section 2.4.1.7, “Index Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.capabilities" number="2.4.1.8" targetptr="ugr.ref.xml.component_descriptor.aes.capabilities"><ttl>Capabilities</ttl><xreftext>Section 2.4.1.8, “Capabilities”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.operational_properties" number="2.4.1.9" targetptr="ugr.ref.xml.component_descriptor.aes.operational_properties"><ttl>OperationalProperties</ttl><xreftext>Section 2.4.1.9, “OperationalProperties”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies" number="2.4.1.10" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies"><ttl>External Resource Dependencies</ttl><xreftext>Section 2.4.1.10, “External Reso
 urce Dependencies”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration" number="2.4.1.11" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration"><ttl>Resource Manager Configuration</ttl><xreftext>Section 2.4.1.11, “Resource Manager Configuration”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.environment_variable_references" number="2.4.1.12" targetptr="ugr.ref.xml.component_descriptor.aes.environment_variable_references"><ttl>Environment Variable References</ttl><xreftext>Section 2.4.1.12, “Environment Variable References”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate" number="2.4.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate"><ttl>Aggregate Analysis Engine Descriptors</ttl><xreftext>Section 2.4.2, “Aggregate Analysis Engine Des
 criptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.delegates" number="2.4.2.1" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.delegates"><ttl>Delegate Analysis Engine Specifiers</ttl><xreftext>Section 2.4.2.1, “Delegate Analysis Engine Specifiers”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller" number="2.4.2.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller"><ttl>FlowController</ttl><xreftext>Section 2.4.2.2, “FlowController”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints" number="2.4.2.3" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints"><ttl>FlowConstraints</ttl><xreftext>Section 2.4.2.3, “FlowConstraints”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_co
 nstraints.fixed_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.fixed_flow"><ttl>Fixed Flow</ttl><xreftext>the section called “Fixed Flow”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow"><ttl>Capability Language Flow</ttl><xreftext>the section called “Capability Language Flow”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides" number="2.4.2.4" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides"><ttl>Configuration Parameter Overrides</ttl><xreftext>Section 2.4.2.4, “Configuration Parameter Overrides”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.ag
 gregate.external_resource_bindings" number="2.4.2.5" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.external_resource_bindings"><ttl>External Resource Bindings</ttl><xreftext>Section 2.4.2.5, “External Resource Bindings”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings" number="2.4.2.6" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings"><ttl>Sofa Mappings</ttl><xreftext>Section 2.4.2.6, “Sofa Mappings”</xreftext></div></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.flow_controller" number="2.5" targetptr="ugr.ref.xml.component_descriptor.flow_controller"><ttl>Flow Controller Descriptors</ttl><xreftext>Section 2.5, “Flow Controller Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts" number="2.6" targetptr="ugr.ref.xml.component_descriptor.collection_proc
 essing_parts"><ttl>Collection Processing Component Descriptors</ttl><xreftext>Section 2.6, “Collection Processing Component Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader" number="2.6.1" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader"><ttl>Collection Reader Descriptors</ttl><xreftext>Section 2.6.1, “Collection Reader Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer" number="2.6.2" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer"><ttl>CAS Initializer Descriptors (deprecated)</ttl><xreftext>Section 2.6.2, “CAS Initializer Descriptors (deprecated)”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer" number="2.6.3" targetp
 tr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer"><ttl>CAS Consumer Descriptors</ttl><xreftext>Section 2.6.3, “CAS Consumer Descriptors”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.service_client" number="2.7" targetptr="ugr.ref.xml.component_descriptor.service_client"><ttl>Service Client Descriptors</ttl><xreftext>Section 2.7, “Service Client Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.custom_resource_specifiers" number="2.8" targetptr="ugr.ref.xml.component_descriptor.custom_resource_specifiers"><ttl>Custom Resource Specifiers</ttl><xreftext>Section 2.8, “Custom Resource Specifiers”</xreftext></div></div><div element="chapter" href="#ugr.ref.xml.cpe_descriptor" number="3" targetptr="ugr.ref.xml.cpe_descriptor"><ttl>Collection Processing Engine Descriptor Reference</ttl><xreftext>Chapter 3, <fo:inline xmlns:fo="http:
 //www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">Collection Processing Engine Descriptor Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.overview" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview"><ttl>CPE Overview</ttl><xreftext>Section 3.1, “CPE Overview”</xreftext><obj element="figure" href="#ugr.ref.xml.cpe_descriptor.overview.fig.runtime" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview.fig.runtime"><ttl>CPE Runtime Overview</ttl><xreftext>Figure 3.1, “CPE Runtime Overview”</xreftext></obj></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.notation" number="3.2" targetptr="ugr.ref.xml.cpe_descriptor.notation"><ttl>Notation</ttl><xreftext>Section 3.2, “Notation”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.imports" number="3.3" targetptr="ugr.ref.xml.cpe_descriptor.imports"><ttl>Imports</
 ttl><xreftext>Section 3.3, “Imports”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor" number="3.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor"><ttl>CPE Descriptor Overview</ttl><xreftext>Section 3.4, “CPE Descriptor Overview”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader" number="3.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader"><ttl>Collection Reader</ttl><xreftext>Section 3.5, “Collection Reader”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling" number="3.5.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling"><ttl>Error handling for Collection Readers</ttl><xreftext>Section 3.5.1, “Error handling for Collection Readers”</xreftext></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.c
 as_processors" number="3.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors"><ttl>CAS Processors</ttl><xreftext>Section 3.6, “CAS Processors”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual" number="3.6.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual"><ttl>Specifying an Individual CAS Processor</ttl><xreftext>Section 3.6.1, “Specifying an Individual CAS Processor”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor" number="3.6.1.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor"><ttl>&lt;descriptor&gt; Element</ttl><xreftext>Section 3.6.1.1, “&lt;descriptor&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings" number="3.6.1.2" targetp
 tr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings"><ttl>&lt;configurationParameterSettings&gt; Element</ttl><xreftext>Section 3.6.1.2, “&lt;configurationParameterSettings&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings" number="3.6.1.3" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings"><ttl>&lt;sofaNameMappings&gt; Element</ttl><xreftext>Section 3.6.1.3, “&lt;sofaNameMappings&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process" number="3.6.1.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process"><ttl>&lt;runInSeparateProcess&gt; Element</ttl><xreftext>Section 3.6.1.4, “&lt;runInSeparateProcess&gt; Element”</xreftext></div><div elem
 ent="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters" number="3.6.1.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters"><ttl>&lt;deploymentParameters&gt; Element</ttl><xreftext>Section 3.6.1.5, “&lt;deploymentParameters&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter" number="3.6.1.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter"><ttl>&lt;filter&gt; Element</ttl><xreftext>Section 3.6.1.6, “&lt;filter&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling" number="3.6.1.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling"><ttl>&lt;errorHandling&gt; Element</ttl><xreftext>Section 3.6.1.7, “&lt;errorHandl
 ing&gt; Element”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action" number="" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action"><ttl>Retry action taken on a timeout</ttl><xreftext>the section called “Retry action taken on a timeout”</xreftext></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint" number="3.6.1.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint"><ttl>&lt;checkpoint&gt; Element</ttl><xreftext>Section 3.6.1.8, “&lt;checkpoint&gt; Element”</xreftext></div></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters" number="3.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters"><ttl>CPE Operational Parameters</ttl><xreftex
 t>Section 3.7, “CPE Operational Parameters”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration" number="3.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration"><ttl>Resource Manager Configuration</ttl><xreftext>Section 3.8, “Resource Manager Configuration”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.example" number="3.9" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.example"><ttl>Example CPE Descriptor</ttl><xreftext>Section 3.9, “Example CPE Descriptor”</xreftext></div></div><div element="chapter" href="#ugr.ref.cas" number="4" targetptr="ugr.ref.cas"><ttl>CAS Reference</ttl><xreftext>Chapter 4, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">CAS Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.cas.javadocs"
  number="4.1" targetptr="ugr.ref.cas.javadocs"><ttl>Javadocs</ttl><xreftext>Section 4.1, “Javadocs”</xreftext></div><div element="section" href="#ugr.ref.cas.overview" number="4.2" targetptr="ugr.ref.cas.overview"><ttl>CAS Overview</ttl><xreftext>Section 4.2, “CAS Overview”</xreftext><div element="section" href="#ugr.ref.cas.type_system" number="4.2.1" targetptr="ugr.ref.cas.type_system"><ttl>The Type System</ttl><xreftext>Section 4.2.1, “The Type System”</xreftext></div><div element="section" href="#ugr.ref.cas.creating_accessing_manipulating_data" number="4.2.2" targetptr="ugr.ref.cas.creating_accessing_manipulating_data"><ttl>Creating, accessing and manipulating data</ttl><xreftext>Section 4.2.2, “Creating/Accessing/Changing data”</xreftext></div><div element="section" href="#ugr.ref.cas.creating_using_indexes" number="4.2.3" targetptr="ugr.ref.cas.creating_using_indexes"><ttl>Creating and using indexes</ttl><xreftext>Se
 ction 4.2.3, “Creating and using indexes”</xreftext></div></div><div element="section" href="#ugr.ref.cas.builtin_types" number="4.3" targetptr="ugr.ref.cas.builtin_types"><ttl>Built-in CAS Types</ttl><xreftext>Section 4.3, “Built-in CAS Types”</xreftext><obj element="para" href="#ugr.ref.cas.document_annotation" number="" targetptr="ugr.ref.cas.document_annotation"><ttl>???TITLE???</ttl><xreftext>Section 4.3, “Built-in CAS Types”</xreftext></obj></div><div element="section" href="#ugr.ref.cas.accessing_the_type_system" number="4.4" targetptr="ugr.ref.cas.accessing_the_type_system"><ttl>Accessing the type system</ttl><xreftext>Section 4.4, “Accessing the type system”</xreftext><div element="section" href="#ugr.ref.cas.type_system.printer_example" number="4.4.1" targetptr="ugr.ref.cas.type_system.printer_example"><ttl>TypeSystemPrinter example</ttl><xreftext>Section 4.4.1, “TypeSystemPrinter example”</xreftext><
 /div><div element="section" href="#ugr.ref.cas.cas_apis_create_modify_feature_structures" number="4.4.2" targetptr="ugr.ref.cas.cas_apis_create_modify_feature_structures"><ttl>Using the CAS APIs to create and modify feature structures</ttl><xreftext>Section 4.4.2, “Using CAS APIs: Feature Structures”</xreftext></div></div><div element="section" href="#ugr.ref.cas.creating_feature_structures" number="4.5" targetptr="ugr.ref.cas.creating_feature_structures"><ttl>Creating feature structures</ttl><xreftext>Section 4.5, “Creating feature structures”</xreftext></div><div element="section" href="#ugr.ref.cas.accessing_modifying_features_of_feature_structures" number="4.6" targetptr="ugr.ref.cas.accessing_modifying_features_of_feature_structures"><ttl>Accessing or modifying features of feature structures</ttl><xreftext>Section 4.6, “Accessing or modifying Features”</xreftext></div><div element="section" href="#ugr.ref.cas.indexes_and_iterators"
  number="4.7" targetptr="ugr.ref.cas.indexes_and_iterators"><ttl>Indexes and Iterators</ttl><xreftext>Section 4.7, “Indexes and Iterators”</xreftext><div element="section" href="#ugr.ref.cas.index.built_in_indexes" number="4.7.1" targetptr="ugr.ref.cas.index.built_in_indexes"><ttl>Built-in Indexes</ttl><xreftext>Section 4.7.1, “Built-in Indexes”</xreftext></div><div element="section" href="#ugr.ref.cas.index.adding_to_indexes" number="4.7.2" targetptr="ugr.ref.cas.index.adding_to_indexes"><ttl>Adding Feature Structures to the Indexes</ttl><xreftext>Section 4.7.2, “Adding Feature Structures to the Indexes”</xreftext></div><div element="section" href="#ugr.ref.cas.index.iterators" number="4.7.3" targetptr="ugr.ref.cas.index.iterators"><ttl>Iterators</ttl><xreftext>Section 4.7.3, “Iterators”</xreftext></div><div element="section" href="#ugr.ref.cas.index.annotation_index" number="4.7.4" targetptr="ugr.ref.cas.index.annotation_
 index"><ttl>Special iterators for Annotation types</ttl><xreftext>Section 4.7.4, “Special iterators for Annotation types”</xreftext></div><div element="section" href="#ugr.ref.cas.index.constraints_and_filtered_iterators" number="4.7.5" targetptr="ugr.ref.cas.index.constraints_and_filtered_iterators"><ttl>Constraints and Filtered iterators</ttl><xreftext>Section 4.7.5, “Constraints and Filtered iterators”</xreftext></div></div><div element="section" href="#ugr.ref.cas.guide_to_javadocs" number="4.8" targetptr="ugr.ref.cas.guide_to_javadocs"><ttl>The CAS API's – a guide to the Javadocs</ttl><xreftext>Section 4.8, “CAS API's Javadocs”</xreftext><div element="section" href="#ugr.ref.cas.javadocs.cas_package" number="4.8.1" targetptr="ugr.ref.cas.javadocs.cas_package"><ttl>APIs in the CAS package</ttl><xreftext>Section 4.8.1, “APIs in the CAS package”</xreftext><obj element="figure" href="#ugr.ref.cas.fig.api_hierarchy" nu
 mber="4.1" targetptr="ugr.ref.cas.fig.api_hierarchy"><ttl>CAS Object hierarchy</ttl><xreftext>Figure 4.1, “CAS Object hierarchy”</xreftext></obj></div></div></div><div element="chapter" href="#ugr.ref.jcas" number="5" targetptr="ugr.ref.jcas"><ttl>JCas Reference</ttl><xreftext>Chapter 5, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">JCas Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.jcas.name_spaces" number="5.1" targetptr="ugr.ref.jcas.name_spaces"><ttl>Name Spaces</ttl><xreftext>Section 5.1, “Name Spaces”</xreftext></div><div element="section" href="#ugr.ref.jcas.use_of_description" number="5.2" targetptr="ugr.ref.jcas.use_of_description"><ttl>XML description element</ttl><xreftext>Section 5.2, “Use of XML Description”</xreftext></div><div element="section" href="#ugr.ref.jcas.mapping_built_ins" number="5.3" targetptr="ugr.ref.jcas.mapp
 ing_built_ins"><ttl>Mapping built-in CAS types to Java types</ttl><xreftext>Section 5.3, “Mapping built-in CAS types to Java types”</xreftext></div><div element="section" href="#ugr.ref.jcas.augmenting_generated_code" number="5.4" targetptr="ugr.ref.jcas.augmenting_generated_code"><ttl>Augmenting the generated Java Code</ttl><xreftext>Section 5.4, “Augmenting the generated Java Code”</xreftext><div element="section" href="#ugr.ref.jcas.data_persistence" number="5.4.1" targetptr="ugr.ref.jcas.data_persistence"><ttl>Persistence of additional data</ttl><xreftext>Section 5.4.1, “Persistence of additional data”</xreftext></div><div element="section" href="#ugr.ref.jcas.keeping_augmentations_when_regenerating" number="5.4.2" targetptr="ugr.ref.jcas.keeping_augmentations_when_regenerating"><ttl>Keeping hand-coded augmentations when regenerating</ttl><xreftext>Section 5.4.2, “Keeping hand-coded augmentations when regenerating”</xre
 ftext></div><div element="section" href="#ugr.ref.jcas.additional_constructors" number="5.4.3" targetptr="ugr.ref.jcas.additional_constructors"><ttl>Additional Constructors</ttl><xreftext>Section 5.4.3, “Additional Constructors”</xreftext><div element="section" href="#ugr.ref.jcas.using_readobject" number="5.4.3.1" targetptr="ugr.ref.jcas.using_readobject"><ttl>Using readObject</ttl><xreftext>Section 5.4.3.1, “Using readObject”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.modifying_generated_items" number="5.4.4" targetptr="ugr.ref.jcas.modifying_generated_items"><ttl>Modifying generated items</ttl><xreftext>Section 5.4.4, “Modifying generated items”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.merging_types_from_other_specs" number="5.5" targetptr="ugr.ref.jcas.merging_types_from_other_specs"><ttl>Merging types</ttl><xreftext>Section 5.5, “Merging Types”</xreftext><div element="secti
 on" href="#ugr.ref.jcas.merging_types.aggregates_and_cpes" number="5.5.1" targetptr="ugr.ref.jcas.merging_types.aggregates_and_cpes"><ttl>Aggregate AEs and CPEs as sources of types</ttl><xreftext>Section 5.5.1, “Aggregate AEs and CPEs as sources of types”</xreftext></div><div element="section" href="#ugr.ref.jcas.merging_types.jcasgen_support" number="5.5.2" targetptr="ugr.ref.jcas.merging_types.jcasgen_support"><ttl>JCasGen support for type merging</ttl><xreftext>Section 5.5.2, “JCasGen support for type merging”</xreftext></div><div element="section" href="#ugr.ref.jcas.impact_of_type_merging_on_composability" number="5.5.3" targetptr="ugr.ref.jcas.impact_of_type_merging_on_composability"><ttl>Impact of Type Merging on Composability of Annotators</ttl><xreftext>Section 5.5.3, “Type Merging impacts on Composability”</xreftext></div><div element="section" href="#ugr.ref.jcas.documentannotation_issues" number="5.5.4" targetptr="ugr.ref.jc
 as.documentannotation_issues"><ttl>Adding Features to DocumentAnnotation</ttl><xreftext>Section 5.5.4, “Adding Features to DocumentAnnotation”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.using_within_an_annotator" number="5.6" targetptr="ugr.ref.jcas.using_within_an_annotator"><ttl>Using JCas within an Annotator</ttl><xreftext>Section 5.6, “Using JCas within an Annotator”</xreftext><div element="section" href="#ugr.ref.jcas.new_instances" number="5.6.1" targetptr="ugr.ref.jcas.new_instances"><ttl>Creating new instances using the Java “new” operator</ttl><xreftext>Section 5.6.1, “Creating new instances”</xreftext></div><div element="section" href="#ugr.ref.jcas.getters_and_setters" number="5.6.2" targetptr="ugr.ref.jcas.getters_and_setters"><ttl>Getters and Setters</ttl><xreftext>Section 5.6.2, “Getters and Setters”</xreftext></div><div element="section" href="#ugr.ref.jcas.obtaining_refs_to_in
 dexes" number="5.6.3" targetptr="ugr.ref.jcas.obtaining_refs_to_indexes"><ttl>Obtaining references to Indexes</ttl><xreftext>Section 5.6.3, “Obtaining references to Indexes”</xreftext></div><div element="section" href="#ugr.ref.jcas.adding_removing_instances_to_indexes" number="5.6.4" targetptr="ugr.ref.jcas.adding_removing_instances_to_indexes"><ttl>Adding (and removing) instances to (from) indexes</ttl><xreftext>Section 5.6.4, “Updating Indexes”</xreftext></div><div element="section" href="#ugr.ref.jcas.using_iterators" number="5.6.5" targetptr="ugr.ref.jcas.using_iterators"><ttl>Using Iterators</ttl><xreftext>Section 5.6.5, “Using Iterators”</xreftext></div><div element="section" href="#ugr.ref.jcas.class_loaders" number="5.6.6" targetptr="ugr.ref.jcas.class_loaders"><ttl>Class Loaders in UIMA</ttl><xreftext>Section 5.6.6, “Class Loaders in UIMA”</xreftext><div element="section" href="#ugr.ref.jcas.class_loaders.optional
 " number="5.6.6.1" targetptr="ugr.ref.jcas.class_loaders.optional"><ttl>Use of Class Loaders is optional</ttl><xreftext>Section 5.6.6.1, “Use of Class Loaders is optional”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.accessing_jcas_objects_outside_uima_components" number="5.6.7" targetptr="ugr.ref.jcas.accessing_jcas_objects_outside_uima_components"><ttl>Issues accessing JCas objects outside of UIMA Engine Components</ttl><xreftext>Section 5.6.7, “Issues accessing JCas objects outside of UIMA Engine Components”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.setting_up_classpath" number="5.7" targetptr="ugr.ref.jcas.setting_up_classpath"><ttl>Setting up Classpath for JCas</ttl><xreftext>Section 5.7, “Setting up Classpath for JCas”</xreftext></div><div element="section" href="#ugr.ref.jcas.pear_support" number="5.8" targetptr="ugr.ref.jcas.pear_support"><ttl>PEAR isolation</ttl><xreftext>Section 5.
 8, “PEAR isolation”</xreftext></div></div><div element="chapter" href="#ugr.ref.pear" number="6" targetptr="ugr.ref.pear"><ttl>PEAR Reference</ttl><xreftext>Chapter 6, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">PEAR Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.pear.packaging_a_component" number="6.1" targetptr="ugr.ref.pear.packaging_a_component"><ttl>Packaging a UIMA component</ttl><xreftext>Section 6.1, “Packaging a UIMA component”</xreftext><div element="section" href="#ugr.ref.pear.creating_pear_structure" number="6.1.1" targetptr="ugr.ref.pear.creating_pear_structure"><ttl>Creating the PEAR structure</ttl><xreftext>Section 6.1.1, “Creating the PEAR structure”</xreftext><obj element="figure" href="#ugr.ref.pear.fig.pear_structure" number="6.1" targetptr="ugr.ref.pear.fig.pear_structure"><ttl>The PEAR Structure</ttl><xreftext>FigureÂ
  6.1, “The PEAR Structure”</xreftext></obj></div><div element="section" href="#ugr.ref.pear.populating_pear_structure" number="6.1.2" targetptr="ugr.ref.pear.populating_pear_structure"><ttl>Populating the PEAR structure</ttl><xreftext>Section 6.1.2, “Populating the PEAR structure”</xreftext><div element="section" href="#ugr.ref.pear.package_type.standard" number="6.1.2.1" targetptr="ugr.ref.pear.package_type.standard"><ttl>Standard Type</ttl><xreftext>Section 6.1.2.1, “Standard Type”</xreftext></div><div element="section" href="#ugr.ref.pear.package_type.service" number="6.1.2.2" targetptr="ugr.ref.pear.package_type.service"><ttl>Service Type</ttl><xreftext>Section 6.1.2.2, “Service Type”</xreftext></div><div element="section" href="#ugr.ref.pear.package_type.network" number="6.1.2.3" targetptr="ugr.ref.pear.package_type.network"><ttl>Network Type</ttl><xreftext>Section 6.1.2.3, “Network Type”</xreftext></div></d
 iv><div element="section" href="#ugr.ref.pear.creating_installation_descriptor" number="6.1.3" targetptr="ugr.ref.pear.creating_installation_descriptor"><ttl>Creating the installation descriptor</ttl><xreftext>Section 6.1.3, “Creating the installation descriptor”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor" number="6.1.4" targetptr="ugr.ref.pear.installation_descriptor"><ttl>
 				Documented template for the installation descriptor:
 			</ttl><xreftext>Section 6.1.4, “Installation Descriptor: template”</xreftext><div element="section" href="#ugr.ref.pear.installation_descriptor.submitted_component" number="6.1.4.1" targetptr="ugr.ref.pear.installation_descriptor.submitted_component"><ttl>The SUBMITTED_COMPONENT section</ttl><xreftext>Section 6.1.4.1, “The SUBMITTED_COMPONENT section”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.id_name_desc" number="6.1.4.2" targetptr="ugr.ref.pear.installation_descriptor.id_name_desc"><ttl>The ID, NAME, and DESC tags</ttl><xreftext>Section 6.1.4.2, “The ID, NAME, and DESC tags”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type" number="6.1.4.3" targetptr="ugr.ref.pear.installation_descriptor.deployment_type"><ttl>Tags related to deployment types</ttl><xreftext>Section 6.1.4.3, “Tags related to deployment types”</xreftext><div element
 ="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.standard" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.standard"><ttl>Standard Type</ttl><xreftext>the section called “Standard Type”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.service" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.service"><ttl>Service Type</ttl><xreftext>the section called “Service Type”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.network" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.network"><ttl>Network Type</ttl><xreftext>the section called “Network Type”</xreftext></div></div><div element="section" href="#ugr.ref.pear.installation_descriptor.collection_reader_cas_consumer" number="6.1.4.4" targetptr="ugr.ref.pear.installation_descriptor.collection_reader_cas_c
 onsumer"><ttl>The Collection Reader and CAS Consumer tags</ttl><xreftext>Section 6.1.4.4, “The Collection Reader and CAS Consumer tags”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.installation" number="6.1.4.5" targetptr="ugr.ref.pear.installation_descriptor.installation"><ttl>The INSTALLATION section</ttl><xreftext>Section 6.1.4.5, “The INSTALLATION section”</xreftext></div></div><div element="section" href="#ugr.ref.pear.packaging_into_1_file" number="6.1.5" targetptr="ugr.ref.pear.packaging_into_1_file"><ttl>Packaging the PEAR structure into one file</ttl><xreftext>Section 6.1.5, “Packaging the PEAR structure into one file”</xreftext></div></div><div element="section" href="#ugr.ref.pear.installing" number="6.2" targetptr="ugr.ref.pear.installing"><ttl>Installing a PEAR package</ttl><xreftext>Section 6.2, “Installing a PEAR package”</xreftext><div element="section" href="#ugr.ref.pe
 ar.installing_pear_using_API" number="6.2.1" targetptr="ugr.ref.pear.installing_pear_using_API"><ttl>Installing a PEAR file using the PEAR APIs</ttl><xreftext>Section 6.2.1, “Installing a PEAR file using the PEAR APIs”</xreftext></div></div><div element="section" href="#ugr.ref.pear.specifier" number="6.3" targetptr="ugr.ref.pear.specifier"><ttl>PEAR package descriptor</ttl><xreftext>Section 6.3, “PEAR package descriptor”</xreftext></div></div><div element="chapter" href="#ugr.ref.xmi" number="7" targetptr="ugr.ref.xmi"><ttl>XMI CAS Serialization Reference</ttl><xreftext>Chapter 7, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" xmlns:xlink="http://www.w3.org/1999/xlink" font-style="italic">XMI CAS Serialization Reference</fo:inline></xreftext><div element="section" href="#ugr.ref.xmi.xmi_tag" number="7.1" targetptr="ugr.ref.xmi.xmi_tag"><ttl>XMI Tag</ttl><xreftext>Section 7.1, “XMI Tag”</xreftext></div><div element="section"
  href="#ugr.ref.xmi.feature_structures" number="7.2" targetptr="ugr.ref.xmi.feature_structures"><ttl>Feature Structures</ttl><xreftext>Section 7.2, “Feature Structures”</xreftext></div><div element="section" href="#ugr.ref.xmi.primitive_features" number="7.3" targetptr="ugr.ref.xmi.primitive_features"><ttl>Primitive Features</ttl><xreftext>Section 7.3, “Primitive Features”</xreftext></div><div element="section" href="#ugr.ref.xmi.reference_features" number="7.4" targetptr="ugr.ref.xmi.reference_features"><ttl>Reference Features</ttl><xreftext>Section 7.4, “Reference Features”</xreftext></div><div element="section" href="#ugr.ref.xmi.array_and_list_features" number="7.5" targetptr="ugr.ref.xmi.array_and_list_features"><ttl>Array and List Features</ttl><xreftext>Section 7.5, “Array and List Features”</xreftext><div element="section" href="#ugr.ref.xmi.array_and_list_features.as_multi_valued_properties" number="7.5.1" targetpt
 r="ugr.ref.xmi.array_and_list_features.as_multi_valued_properties"><ttl>Arrays and Lists as Multi-Valued Properties</ttl><xreftext>Section 7.5.1, “Arrays and Lists as Multi-Valued Properties”</xreftext></div><div element="section" href="#ugr.ref.xmi.array_and_list_features.as_1st_class_objects" number="7.5.2" targetptr="ugr.ref.xmi.array_and_list_features.as_1st_class_objects"><ttl>Arrays and Lists as First-Class Objects</ttl><xreftext>Section 7.5.2, “Arrays and Lists as First-Class Objects”</xreftext></div><div element="section" href="#ugr.ref.xmi.null_array_list_elements" number="7.5.3" targetptr="ugr.ref.xmi.null_array_list_elements"><ttl>Null Array/List Elements</ttl><xreftext>Section 7.5.3, “Null Array/List Elements”</xreftext></div></div><div element="section" href="#ugr.ref.xmi.sofas_views" number="7.6" targetptr="ugr.ref.xmi.sofas_views"><ttl>Subjects of Analysis (Sofas) and Views</ttl><xreftext>Section 7.6, “Subjects of
  Analysis (Sofas) and Views”</xreftext></div><div element="section" href="#ugr.ref.xmi.linking_to_ecore_type_system" number="7.7" targetptr="ugr.ref.xmi.linking_to_ecore_type_system"><ttl>Linking an XMI Document to its Ecore Type System</ttl><xreftext>Section 7.7, “Linking XMI docs to Ecore Type System”</xreftext></div></div></div>
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