cTakes 3.2.3 dictionary fast lookup issue

[Ks Sunder <sh...@gmail.com>]

Hi Sean,

I am using cTake 3.2.3 vesrion Maven dependency for dictionary fast lookup,

previously its running properly.

But now i am getting this exception how can i reslove this issue please
help me.



Jun 06, 2017 1:29:21 PM org.apache.tomcat.util.digester.SetPropertiesRule
begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting
property 'source' to 'org.eclipse.jst.jee.server:WebAppcTakes' did not find
a matching property.
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Server version:        Apache Tomcat/7.0.73
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Server built:          Nov 7 2016 21:27:23 UTC
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Server number:         7.0.73.0
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: OS Name:               Windows 7
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: OS Version:            6.1
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Architecture:          amd64
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Java Home:             E:\Installed applications\jdk1.8\jre
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: JVM Version:           1.8.0_111-b14
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: JVM Vendor:            Oracle Corporation
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: CATALINA_BASE:
C:\Users\NI3102\Neonworkspace11917\.metadata\.plugins\org.eclipse.wst.server.core\tmp0
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: CATALINA_HOME:         E:\apache-tomcat-7.0.73
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Command line argument:
-Dcatalina.base=C:\Users\NI3102\Neonworkspace11917\.metadata\.plugins\org.eclipse.wst.server.core\tmp0
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Command line argument: -Dcatalina.home=E:\apache-tomcat-7.0.73
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Command line argument:
-Dwtp.deploy=C:\Users\NI3102\Neonworkspace11917\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\wtpwebapps
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Command line argument:
-Djava.endorsed.dirs=E:\apache-tomcat-7.0.73\endorsed
Jun 06, 2017 1:29:21 PM org.apache.catalina.startup.VersionLoggerListener
log
INFO: Command line argument: -Dfile.encoding=Cp1252
Jun 06, 2017 1:29:21 PM org.apache.catalina.core.AprLifecycleListener
lifecycleEvent
INFO: The APR based Apache Tomcat Native library which allows optimal
performance in production environments was not found on the
java.library.path: E:\Installed
applications\jdk1.8\bin;C:\Windows\Sun\Java\bin;C:\Windows\system32;C:\Windows;E:/Installed
applications/jre1.8/bin/server;E:/Installed
applications/jre1.8/bin;E:/Installed
applications/jre1.8/lib/amd64;C:\ProgramData\Oracle\Java\javapath;E:\python\Scripts\;E:\python\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program
Files\Intel\DMIX;E:\Installed applications\Tortoisesvn\bin;E:\Installed
applications\jdk1.8\bin;E:\Installed applications\jre1.8\bin;E:\Installed
applications\apache-maven-3.3.9/bin;C:\Users\NI3102\AppData\Local\Continuum\Anaconda3;C:\Users\NI3102\AppData\Local\Continuum\Anaconda3\Scripts;C:\Users\NI3102\AppData\Local\Continuum\Anaconda3\Library\bin;E:\Installed
applications\New folder;E:\Installed applications\New
folder\Scripts;E:\Installed applications\New
folder\Library\bin;E:\Installed applications\Anaconda;E:\Installed
applications\Anaconda\Scripts;E:\Installed
applications\Anaconda\Library\bin;C:\Users\NI3102\Desktop\eclipse-jee-neon-2-win32-x86_64\eclipse;;.
Jun 06, 2017 1:29:22 PM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["http-bio-8080"]
Jun 06, 2017 1:29:22 PM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["ajp-bio-8009"]
Jun 06, 2017 1:29:22 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 5213 ms
Jun 06, 2017 1:29:22 PM org.apache.catalina.core.StandardService
startInternal
INFO: Starting service Catalina
Jun 06, 2017 1:29:22 PM org.apache.catalina.core.StandardEngine
startInternal
INFO: Starting Servlet Engine: Apache Tomcat/7.0.73
Jun 06, 2017 1:29:23 PM org.apache.catalina.util.SessionIdGeneratorBase
createSecureRandom
INFO: Creation of SecureRandom instance for session ID generation using
[SHA1PRNG] took [188] milliseconds.
Jun 06, 2017 1:29:42 PM org.apache.catalina.startup.TaglibUriRule body
INFO: TLD skipped. URI: urn:com:sun:jersey:api:view is already defined
Jun 06, 2017 1:29:43 PM org.apache.catalina.startup.TldConfig execute
INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable
debug logging for this logger for a complete list of JARs that were scanned
but no TLDs were found in them. Skipping unneeded JARs during scanning can
improve startup time and JSP compilation time.
Initilizing Pipeline...
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is  [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is  [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is  [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
%5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
Jun 06, 2017 1:29:47 PM org.apache.catalina.core.ApplicationContext log
SEVERE: StandardWrapper.Throwable
java.lang.NoClassDefFoundError:
org/apache/ctakes/core/util/collection/CollectionMap
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.setParameters(ConfigurationParameterFactory.java:348)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngineDescription(AnalysisEngineFactory.java:1275)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngineDescription(AnalysisEngineFactory.java:1094)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngineDescription(AnalysisEngineFactory.java:971)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:35)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1269)
at
org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1182)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1072)
at
org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5368)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5660)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at
org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1571)
at
org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1561)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassNotFoundException:
org.apache.ctakes.core.util.collection.CollectionMap
at
org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1892)
at
org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1735)
... 23 more

Jun 06, 2017 1:29:47 PM org.apache.catalina.core.StandardContext
loadOnStartup
SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw
load() exception
java.lang.ClassNotFoundException:
org.apache.ctakes.core.util.collection.CollectionMap
at
org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1892)
at
org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1735)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.setParameters(ConfigurationParameterFactory.java:348)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngineDescription(AnalysisEngineFactory.java:1275)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngineDescription(AnalysisEngineFactory.java:1094)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngineDescription(AnalysisEngineFactory.java:971)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:35)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1269)
at
org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1182)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1072)
at
org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5368)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5660)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at
org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1571)
at
org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1561)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Jun 06, 2017 1:29:47 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
  com.test.rest.app
Jun 06, 2017 1:29:47 PM com.sun.jersey.api.core.ScanningResourceConfig
logClasses
INFO: Root resource classes found:
  class com.test.rest.app.MyJerseyPage
Jun 06, 2017 1:29:47 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 06, 2017 1:29:47 PM
com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013
03:28 PM'
Jun 06, 2017 1:29:48 PM com.sun.jersey.spi.inject.Errors
processErrorMessages
WARNING: The following warnings have been detected with resource and/or
provider classes:
  WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getCUIforCSVfile(), MUST return a non-void
type.
  WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.Test(), MUST return a non-void type.
  WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.Test1(), MUST return a non-void type.
  WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.csvReaderForUMLwords(), MUST return a
non-void type.
  WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getCUIforCSVfile1(), MUST return a non-void
type.
  WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getLineByLineTest(), MUST return a non-void
type.
Jun 06, 2017 1:29:48 PM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-bio-8080"]
Jun 06, 2017 1:29:48 PM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["ajp-bio-8009"]
Jun 06, 2017 1:29:48 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 25973 ms



regards,
shyam k.