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Posted to dev@ctakes.apache.org by "Masanz, James J." <Ma...@mayo.edu> on 2013/09/20 22:46:14 UTC

DOAP file update for 3.1

Pei, 

Can you publish this change I made to the DOAP file (below) so that our projects page [1] lists 3.1 as the current release

[1] http://projects.apache.org/projects/ctakes.html

-- James

-----Original Message-----
From: commits-return-2593-Masanz.James=mayo.edu@ctakes.apache.org [mailto:commits-return-2593-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of james-masanz@apache.org
Sent: Friday, September 20, 2013 3:34 PM
To: commits@ctakes.apache.org
Subject: svn commit: r1525131 - /ctakes/site/doap_cTAKES.rdf

Author: james-masanz
Date: Fri Sep 20 20:33:54 2013
New Revision: 1525131

URL: http://svn.apache.org/r1525131
Log:
CTAKES-215 - update documentation (DOAP) now that 3.1.0 was released

Modified:
    ctakes/site/doap_cTAKES.rdf

Modified: ctakes/site/doap_cTAKES.rdf
URL: http://svn.apache.org/viewvc/ctakes/site/doap_cTAKES.rdf?rev=1525131&r1=1525130&r2=1525131&view=diff
==============================================================================
--- ctakes/site/doap_cTAKES.rdf (original)
+++ ctakes/site/doap_cTAKES.rdf Fri Sep 20 20:33:54 2013
@@ -39,8 +39,8 @@
     <release>
       <Version>
         <name>Apache cTAKES</name>
-        <created>2013-02-22</created>
-        <revision>3.0.0-incubating</revision>
+        <created>2013-09-16</created>
+        <revision>3.1.0</revision>
       </Version>
     </release>
     <repository>



Re: DOAP file update for 3.1

Posted by Pei Chen <ch...@apache.org>.
Yup. it looks like the auto update automatically picked up the new DOAP
file now:
http://projects.apache.org/projects/ctakes.html
--Pei


On Fri, Sep 20, 2013 at 4:46 PM, Masanz, James J. <Ma...@mayo.edu>wrote:

>
> Pei,
>
> Can you publish this change I made to the DOAP file (below) so that our
> projects page [1] lists 3.1 as the current release
>
> [1] http://projects.apache.org/projects/ctakes.html
>
> -- James
>
> -----Original Message-----
> From: commits-return-2593-Masanz.James=mayo.edu@ctakes.apache.org [mailto:
> commits-return-2593-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of
> james-masanz@apache.org
> Sent: Friday, September 20, 2013 3:34 PM
> To: commits@ctakes.apache.org
> Subject: svn commit: r1525131 - /ctakes/site/doap_cTAKES.rdf
>
> Author: james-masanz
> Date: Fri Sep 20 20:33:54 2013
> New Revision: 1525131
>
> URL: http://svn.apache.org/r1525131
> Log:
> CTAKES-215 - update documentation (DOAP) now that 3.1.0 was released
>
> Modified:
>     ctakes/site/doap_cTAKES.rdf
>
> Modified: ctakes/site/doap_cTAKES.rdf
> URL:
> http://svn.apache.org/viewvc/ctakes/site/doap_cTAKES.rdf?rev=1525131&r1=1525130&r2=1525131&view=diff
>
> ==============================================================================
> --- ctakes/site/doap_cTAKES.rdf (original)
> +++ ctakes/site/doap_cTAKES.rdf Fri Sep 20 20:33:54 2013
> @@ -39,8 +39,8 @@
>      <release>
>        <Version>
>          <name>Apache cTAKES</name>
> -        <created>2013-02-22</created>
> -        <revision>3.0.0-incubating</revision>
> +        <created>2013-09-16</created>
> +        <revision>3.1.0</revision>
>        </Version>
>      </release>
>      <repository>
>
>
>

Re: examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Thanks Dima for these extra info. that may help me
I'll try it and let you know.
Samir




________________________________
 From: Dmitriy Dligach <dm...@childrens.harvard.edu>
To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org> 
Sent: Tuesday, September 24, 2013 4:43:15 PM
Subject: Re: examples of relation extractor annotations
 

Samir,

Actually, the relations are represented in the type system differently. 
Please take a look at the BinaryTextRelation type. If you'd like an 
example of how to iterate over the relations, take a look at 
ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorConsumer.java. 
Once you get a hold of each BinaryTextRelation, you can determine the 
relation type by looking at the 'category' attribute.

Dima

On 09/23/2013 06:43 PM, samir chabou wrote:
> Hi Dima,
>
> I run RelationExtractorPipelineSingleCas.java and i got
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> but when i run UIMA_CVD--relation-extractor.launch - or UIMA_CPE--relation-extractor.launch  on the hurd coded text  "He still is not able to work because of severe pain involving his wrists." there is no annotation of type:
> org.apache.ctakes.typesystem.type.relation.LocationOf
> org.apache.ctakes.typesystem.type.relation.DegreeOf
>
>
> I need to identify the relations  by their annotation type so i can iterate on them
>
> Thanks
> Samir
>
>
>
>
> ________________________________
>   From: Dmitriy Dligach <dm...@childrens.harvard.edu>
> To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Sent: Monday, September 23, 2013 4:38:35 PM
> Subject: Re: examples of relation extractor annotations
>  
>
> Samir,
>
> Could you please try to run ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java and see if it finds any relations in the hard-coded sample sentence. In that sentence
>
> "He still is not able to work because of severe pain involving his wrists."
>
> you should see the following relations:
>
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> which will be printed to the console. The numbers next to each argument are the UMLS semantic types (e.g. 6 = anatomical site).
>
> Dima
>
> On 09/21/2013 11:00 AM, samir chabou wrote:
>> Hi,
>> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>>          "He had a slight fracture in the proximal right fibula.",
>>            "He had a slight fracture in the proximal right fibula .",
>>            "PRP VBD DT JJ NN IN DT JJ JJ NN .");
>>
>>
>> Thanks
>> Samir
>>
> -- Dmitriy Dligach, PhD
> Research Fellow
> Children's Hospital Informatics Program
> Boston Children's Hospital and Harvard Medical School
> (617) 919-3596

-- 
Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596

Re: examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Thanks Dima for these extra info. that may help me
I'll try it and let you know.
Samir




________________________________
 From: Dmitriy Dligach <dm...@childrens.harvard.edu>
To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org> 
Sent: Tuesday, September 24, 2013 4:43:15 PM
Subject: Re: examples of relation extractor annotations
 

Samir,

Actually, the relations are represented in the type system differently. 
Please take a look at the BinaryTextRelation type. If you'd like an 
example of how to iterate over the relations, take a look at 
ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorConsumer.java. 
Once you get a hold of each BinaryTextRelation, you can determine the 
relation type by looking at the 'category' attribute.

Dima

On 09/23/2013 06:43 PM, samir chabou wrote:
> Hi Dima,
>
> I run RelationExtractorPipelineSingleCas.java and i got
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> but when i run UIMA_CVD--relation-extractor.launch - or UIMA_CPE--relation-extractor.launch  on the hurd coded text  "He still is not able to work because of severe pain involving his wrists." there is no annotation of type:
> org.apache.ctakes.typesystem.type.relation.LocationOf
> org.apache.ctakes.typesystem.type.relation.DegreeOf
>
>
> I need to identify the relations  by their annotation type so i can iterate on them
>
> Thanks
> Samir
>
>
>
>
> ________________________________
>   From: Dmitriy Dligach <dm...@childrens.harvard.edu>
> To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Sent: Monday, September 23, 2013 4:38:35 PM
> Subject: Re: examples of relation extractor annotations
>  
>
> Samir,
>
> Could you please try to run ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java and see if it finds any relations in the hard-coded sample sentence. In that sentence
>
> "He still is not able to work because of severe pain involving his wrists."
>
> you should see the following relations:
>
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> which will be printed to the console. The numbers next to each argument are the UMLS semantic types (e.g. 6 = anatomical site).
>
> Dima
>
> On 09/21/2013 11:00 AM, samir chabou wrote:
>> Hi,
>> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>>          "He had a slight fracture in the proximal right fibula.",
>>            "He had a slight fracture in the proximal right fibula .",
>>            "PRP VBD DT JJ NN IN DT JJ JJ NN .");
>>
>>
>> Thanks
>> Samir
>>
> -- Dmitriy Dligach, PhD
> Research Fellow
> Children's Hospital Informatics Program
> Boston Children's Hospital and Harvard Medical School
> (617) 919-3596

-- 
Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596

Re: examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Hi Dima,
Just to let you know that I'm now able to iterate on the relations. I wrote the cas as xmi using the CPE and after i read it. The relations are in the xmi cas even though they don't appear on the CVD.
Thanks for your help
Samir




________________________________
 From: Dmitriy Dligach <dm...@childrens.harvard.edu>
To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org> 
Sent: Tuesday, September 24, 2013 4:43:15 PM
Subject: Re: examples of relation extractor annotations
 

Samir,

Actually, the relations are represented in the type system differently. 
Please take a look at the BinaryTextRelation type. If you'd like an 
example of how to iterate over the relations, take a look at 
ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorConsumer.java. 
Once you get a hold of each BinaryTextRelation, you can determine the 
relation type by looking at the 'category' attribute.

Dima

On 09/23/2013 06:43 PM, samir chabou wrote:
> Hi Dima,
>
> I run RelationExtractorPipelineSingleCas.java and i got
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> but when i run UIMA_CVD--relation-extractor.launch - or UIMA_CPE--relation-extractor.launch  on the hurd coded text  "He still is not able to work because of severe pain involving his wrists." there is no annotation of type:
> org.apache.ctakes.typesystem.type.relation.LocationOf
> org.apache.ctakes.typesystem.type.relation.DegreeOf
>
>
> I need to identify the relations  by their annotation type so i can iterate on them
>
> Thanks
> Samir
>
>
>
>
> ________________________________
>   From: Dmitriy Dligach <dm...@childrens.harvard.edu>
> To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Sent: Monday, September 23, 2013 4:38:35 PM
> Subject: Re: examples of relation extractor annotations
>  
>
> Samir,
>
> Could you please try to run ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java and see if it finds any relations in the hard-coded sample sentence. In that sentence
>
> "He still is not able to work because of severe pain involving his wrists."
>
> you should see the following relations:
>
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> which will be printed to the console. The numbers next to each argument are the UMLS semantic types (e.g. 6 = anatomical site).
>
> Dima
>
> On 09/21/2013 11:00 AM, samir chabou wrote:
>> Hi,
>> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>>          "He had a slight fracture in the proximal right fibula.",
>>            "He had a slight fracture in the proximal right fibula .",
>>            "PRP VBD DT JJ NN IN DT JJ JJ NN .");
>>
>>
>> Thanks
>> Samir
>>
> -- Dmitriy Dligach, PhD
> Research Fellow
> Children's Hospital Informatics Program
> Boston Children's Hospital and Harvard Medical School
> (617) 919-3596

-- 
Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596

Re: examples of relation extractor annotations

Posted by Dmitriy Dligach <dm...@childrens.harvard.edu>.
Samir,

Actually, the relations are represented in the type system differently. 
Please take a look at the BinaryTextRelation type. If you'd like an 
example of how to iterate over the relations, take a look at 
ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorConsumer.java. 
Once you get a hold of each BinaryTextRelation, you can determine the 
relation type by looking at the 'category' attribute.

Dima

On 09/23/2013 06:43 PM, samir chabou wrote:
> Hi Dima,
>
> I run RelationExtractorPipelineSingleCas.java and i got
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> but when i run UIMA_CVD--relation-extractor.launch - or UIMA_CPE--relation-extractor.launch  on the hurd coded text  "He still is not able to work because of severe pain involving his wrists." there is no annotation of type:
> org.apache.ctakes.typesystem.type.relation.LocationOf
> org.apache.ctakes.typesystem.type.relation.DegreeOf
>
>
> I need to identify the relations  by their annotation type so i can iterate on them
>
> Thanks
> Samir
>
>
>
>
> ________________________________
>   From: Dmitriy Dligach <dm...@childrens.harvard.edu>
> To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Sent: Monday, September 23, 2013 4:38:35 PM
> Subject: Re: examples of relation extractor annotations
>   
>
> Samir,
>
> Could you please try to run ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java and see if it finds any relations in the hard-coded sample sentence. In that sentence
>
> "He still is not able to work because of severe pain involving his wrists."
>
> you should see the following relations:
>
> degree_of(severe pain/3, severe/2)
> degree_of(pain/3, severe/2)
> location_of(pain/3, wrists/6)
>
> which will be printed to the console. The numbers next to each argument are the UMLS semantic types (e.g. 6 = anatomical site).
>
> Dima
>
> On 09/21/2013 11:00 AM, samir chabou wrote:
>> Hi,
>> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>>          "He had a slight fracture in the proximal right fibula.",
>>            "He had a slight fracture in the proximal right fibula .",
>>            "PRP VBD DT JJ NN IN DT JJ JJ NN .");
>>
>>
>> Thanks
>> Samir
>>
> -- Dmitriy Dligach, PhD
> Research Fellow
> Children's Hospital Informatics Program
> Boston Children's Hospital and Harvard Medical School
> (617) 919-3596

-- 
Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596


Re: examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Hi Dima,

I run RelationExtractorPipelineSingleCas.java and i got 
degree_of(severe pain/3, severe/2)
degree_of(pain/3, severe/2)
location_of(pain/3, wrists/6)

but when i run UIMA_CVD--relation-extractor.launch - or UIMA_CPE--relation-extractor.launch  on the hurd coded text  "He still is not able to work because of severe pain involving his wrists." there is no annotation of type: 
org.apache.ctakes.typesystem.type.relation.LocationOf
org.apache.ctakes.typesystem.type.relation.DegreeOf


I need to identify the relations  by their annotation type so i can iterate on them

Thanks
Samir




________________________________
 From: Dmitriy Dligach <dm...@childrens.harvard.edu>
To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org> 
Sent: Monday, September 23, 2013 4:38:35 PM
Subject: Re: examples of relation extractor annotations
 

Samir,

Could you please try to run ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java and see if it finds any relations in the hard-coded sample sentence. In that sentence

"He still is not able to work because of severe pain involving his wrists."

you should see the following relations:

degree_of(severe pain/3, severe/2)
degree_of(pain/3, severe/2)
location_of(pain/3, wrists/6)

which will be printed to the console. The numbers next to each argument are the UMLS semantic types (e.g. 6 = anatomical site).

Dima

On 09/21/2013 11:00 AM, samir chabou wrote:
> Hi,
> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>        "He had a slight fracture in the proximal right fibula.",
>          "He had a slight fracture in the proximal right fibula .",
>          "PRP VBD DT JJ NN IN DT JJ JJ NN .");
> 
> 
> Thanks
> Samir
> 

-- Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596

Re: examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Hi Dima,

I run RelationExtractorPipelineSingleCas.java and i got 
degree_of(severe pain/3, severe/2)
degree_of(pain/3, severe/2)
location_of(pain/3, wrists/6)

but when i run UIMA_CVD--relation-extractor.launch - or UIMA_CPE--relation-extractor.launch  on the hurd coded text  "He still is not able to work because of severe pain involving his wrists." there is no annotation of type: 
org.apache.ctakes.typesystem.type.relation.LocationOf
org.apache.ctakes.typesystem.type.relation.DegreeOf


I need to identify the relations  by their annotation type so i can iterate on them

Thanks
Samir




________________________________
 From: Dmitriy Dligach <dm...@childrens.harvard.edu>
To: dev@ctakes.apache.org; samir chabou <sa...@yahoo.com>; "user@ctakes.apache.org" <us...@ctakes.apache.org> 
Sent: Monday, September 23, 2013 4:38:35 PM
Subject: Re: examples of relation extractor annotations
 

Samir,

Could you please try to run ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java and see if it finds any relations in the hard-coded sample sentence. In that sentence

"He still is not able to work because of severe pain involving his wrists."

you should see the following relations:

degree_of(severe pain/3, severe/2)
degree_of(pain/3, severe/2)
location_of(pain/3, wrists/6)

which will be printed to the console. The numbers next to each argument are the UMLS semantic types (e.g. 6 = anatomical site).

Dima

On 09/21/2013 11:00 AM, samir chabou wrote:
> Hi,
> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>        "He had a slight fracture in the proximal right fibula.",
>          "He had a slight fracture in the proximal right fibula .",
>          "PRP VBD DT JJ NN IN DT JJ JJ NN .");
> 
> 
> Thanks
> Samir
> 

-- Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596

Re: examples of relation extractor annotations

Posted by Dmitriy Dligach <dm...@childrens.harvard.edu>.
Samir,

Could you please try to run 
ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java 
and see if it finds any relations in the hard-coded sample sentence. In 
that sentence

"He still is not able to work because of severe pain involving his wrists."

you should see the following relations:

degree_of(severe pain/3, severe/2)
degree_of(pain/3, severe/2)
location_of(pain/3, wrists/6)

which will be printed to the console. The numbers next to each argument 
are the UMLS semantic types (e.g. 6 = anatomical site).

Dima

On 09/21/2013 11:00 AM, samir chabou wrote:
> Hi,
> I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
>        "He had a slight fracture in the proximal right fibula.",
>          "He had a slight fracture in the proximal right fibula .",
>          "PRP VBD DT JJ NN IN DT JJ JJ NN .");
>
>
> Thanks
> Samir
>

-- 
Dmitriy Dligach, PhD
Research Fellow
Children's Hospital Informatics Program
Boston Children's Hospital and Harvard Medical School
(617) 919-3596


examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Hi,
I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
      "He had a slight fracture in the proximal right fibula.",
        "He had a slight fracture in the proximal right fibula .",
        "PRP VBD DT JJ NN IN DT JJ JJ NN .");


Thanks
Samir

examples of relation extractor annotations

Posted by samir chabou <sa...@yahoo.com>.
Hi,
I tried to get examples of relation extractor annotations using RelationExtractorAggregate.xml. I tried the RelationExtractorAggregate on many input medical text but there was no annotation for any kind of relation. I even tried the bellow text used in RelationExtractorAnnotatorsTest but again no relation is annotated. Do you have idea or am i missing some thing ?
      "He had a slight fracture in the proximal right fibula.",
        "He had a slight fracture in the proximal right fibula .",
        "PRP VBD DT JJ NN IN DT JJ JJ NN .");


Thanks
Samir

RE: DOAP file update for 3.1

Posted by "Chen, Pei" <Pe...@childrens.harvard.edu>.
Cool.  Thanks James for updating that.
I *think* it should read the new DOAP and update automatically.  I can check manually if it doesn’t update over the weekend...
--Pei

> -----Original Message-----
> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> Sent: Friday, September 20, 2013 4:47 PM
> To: dev@ctakes.apache.org
> Subject: DOAP file update for 3.1
> 
> 
> Pei,
> 
> Can you publish this change I made to the DOAP file (below) so that our
> projects page [1] lists 3.1 as the current release
> 
> [1] http://projects.apache.org/projects/ctakes.html
> 
> -- James
> 
> -----Original Message-----
> From: commits-return-2593-Masanz.James=mayo.edu@ctakes.apache.org
> [mailto:commits-return-2593-Masanz.James=mayo.edu@ctakes.apache.org]
> On Behalf Of james-masanz@apache.org
> Sent: Friday, September 20, 2013 3:34 PM
> To: commits@ctakes.apache.org
> Subject: svn commit: r1525131 - /ctakes/site/doap_cTAKES.rdf
> 
> Author: james-masanz
> Date: Fri Sep 20 20:33:54 2013
> New Revision: 1525131
> 
> URL: http://svn.apache.org/r1525131
> Log:
> CTAKES-215 - update documentation (DOAP) now that 3.1.0 was released
> 
> Modified:
>     ctakes/site/doap_cTAKES.rdf
> 
> Modified: ctakes/site/doap_cTAKES.rdf
> URL:
> http://svn.apache.org/viewvc/ctakes/site/doap_cTAKES.rdf?rev=1525131&r
> 1=1525130&r2=1525131&view=diff
> ==========================================================
> ====================
> --- ctakes/site/doap_cTAKES.rdf (original)
> +++ ctakes/site/doap_cTAKES.rdf Fri Sep 20 20:33:54 2013
> @@ -39,8 +39,8 @@
>      <release>
>        <Version>
>          <name>Apache cTAKES</name>
> -        <created>2013-02-22</created>
> -        <revision>3.0.0-incubating</revision>
> +        <created>2013-09-16</created>
> +        <revision>3.1.0</revision>
>        </Version>
>      </release>
>      <repository>
>