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Posted to jira@arrow.apache.org by "Antoine Pitrou (Jira)" <ji...@apache.org> on 2021/04/01 09:22:00 UTC
[jira] [Commented] (ARROW-12174) Could't use the read_parquet()
fucntion call
[ https://issues.apache.org/jira/browse/ARROW-12174?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17313038#comment-17313038 ]
Antoine Pitrou commented on ARROW-12174:
----------------------------------------
It looks like you are using the Intel C/C++ compiler and it fails to compile Arrow. I would suggest switching to gcc or clang to try and solve your issue.
(if you are motivated enough, you can also try to submit a PR to allow Arrow to compile with icc)
> Could't use the read_parquet() fucntion call
> --------------------------------------------
>
> Key: ARROW-12174
> URL: https://issues.apache.org/jira/browse/ARROW-12174
> Project: Apache Arrow
> Issue Type: Bug
> Environment: Linux i11.red.uits.iu.edu 3.10.0-1160.15.2.el7.x86_64 #1 SMP Thu Jan 21 16:15:07 EST 2021 x86_64 x86_64 x86_64 GNU/Linux
> RHEL
> Reporter: Rohit Rokde
> Priority: Major
>
> Error in io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
> > arrow::install_arrow(verbose = TRUE)
> Installing package into ‘/geode2/home/u070/rrokde/Carbonate/R/x86_64-pc-linux-gnu-library/3.6’
> (as ‘lib’ is unspecified)
> trying URL 'https://cran.rstudio.com/src/contrib/arrow_3.0.0.tar.gz'
> Content type 'application/x-gzip' length 344814 bytes (336 KB)
> ==================================================
> downloaded 336 KB
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> ** using staged installation
> trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/redhatenterpriseserver-7/arrow-3.0.0.zip'
> Error in download.file(from_url, to_file, quiet = quietly) :
> cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/redhatenterpriseserver-7/arrow-3.0.0.zip'
> *** No C++ binaries found for redhatenterpriseserver-7
> trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
> Error in download.file(from_url, to_file, quiet = quietly) :
> cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
> trying URL 'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
> Content type 'application/octet-stream' length 8200790 bytes (7.8 MB)
> ==================================================
> downloaded 7.8 MB
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> *** Building with MAKEFLAGS= -j2
> **** cmake
> trying URL 'https://github.com/Kitware/CMake/releases/download/v3.19.2/cmake-3.19.2-Linux-x86_64.tar.gz'
> Content type 'application/octet-stream' length 42931014 bytes (40.9 MB)
> ==================================================
> downloaded 40.9 MB
> **** arrow with SOURCE_DIR="/tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp" BUILD_DIR="/tmp/RtmpcOhh4x/file86c71a6ed76f" DEST_DIR="libarrow/arrow-3.0.0" CMAKE="/tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake" CC="icc" CXX="icpc -std=gnu++11" LDFLAGS="-L//N/soft/rhel7/zlib/gnu/1.2.11/lib -L/N/soft/rhel7/bzip2/1.0.6/lib -L/N/soft/rhel7/xz/5.2.4/lib -L/N/soft/rhel7/pcre/8.40/lib -L/N/soft/rhel7/cairo/1.15.4/lib -lcairo" ARROW_S3=ON ARROW_MIMALLOC=ON
> ++ pwd
> + : /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow
> + : /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
> + : /tmp/RtmpcOhh4x/file86c71a6ed76f
> + : libarrow/arrow-3.0.0
> + : /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake
> ++ cd /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
> ++ pwd
> + SOURCE_DIR=/tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
> ++ mkdir -p libarrow/arrow-3.0.0
> ++ cd libarrow/arrow-3.0.0
> ++ pwd
> + DEST_DIR=/tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow/libarrow/arrow-3.0.0
> + '[' '' = '' ']'
> + which ninja
> + CMAKE_GENERATOR=Ninja
> + '[' FALSE = false ']'
> + ARROW_DEFAULT_PARAM=OFF
> + mkdir -p /tmp/RtmpcOhh4x/file86c71a6ed76f
> + pushd /tmp/RtmpcOhh4x/file86c71a6ed76f
> /tmp/RtmpcOhh4x/file86c71a6ed76f /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow
> + /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=BUNDLED -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=OFF -DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow/libarrow/arrow-3.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G Ninja /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
> -- Building using CMake version: 3.19.2
> -- The C compiler identification is Intel 19.0.5.20190815
> -- The CXX compiler identification is Intel 19.0.5.20190815
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Arrow version: 3.0.0 (full: '3.0.0')
> -- Arrow SO version: 300 (full: 300.0.0)
> -- clang-tidy not found
> -- clang-format not found
> -- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
> -- infer not found
> -- Found Python3: /N/soft/rhel7/python/3.8.2/bin/python3.8 (found version "3.8.2") found components: Interpreter
> -- Found cpplint executable at /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp/build-support/cpplint.py
> -- System processor: x86_64
> -- Performing Test CXX_SUPPORTS_SSE4_2
> -- Performing Test CXX_SUPPORTS_SSE4_2 - Success
> -- Performing Test CXX_SUPPORTS_AVX2
> -- Performing Test CXX_SUPPORTS_AVX2 - Success
> -- Performing Test CXX_SUPPORTS_AVX512
> -- Performing Test CXX_SUPPORTS_AVX512 - Success
> -- Arrow build warning level: PRODUCTION
> Using ld linker
> Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=\{release,debug,...})
> -- Build Type: RELEASE
> -- Using BUNDLED approach to find dependencies
> -- ARROW_ABSL_BUILD_VERSION: 0f3bb466b868b523cf1dc9b2aaaed65c77b28862
> -- ARROW_AWSSDK_BUILD_VERSION: 1.8.90
> -- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.5
> -- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.4.59
> -- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
> -- ARROW_BOOST_BUILD_VERSION: 1.71.0
> -- ARROW_BROTLI_BUILD_VERSION: v1.0.7
> -- ARROW_BZIP2_BUILD_VERSION: 1.0.8
> -- ARROW_CARES_BUILD_VERSION: 1.16.1
> -- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.2
> -- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
> -- ARROW_GLOG_BUILD_VERSION: v0.4.0
> -- ARROW_GRPC_BUILD_VERSION: v1.33.2
> -- ARROW_GTEST_BUILD_VERSION: 1.10.0
> -- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
> -- ARROW_LZ4_BUILD_VERSION: v1.9.2
> -- ARROW_MIMALLOC_BUILD_VERSION: v1.6.4
> -- ARROW_ORC_BUILD_VERSION: 1.6.2
> -- ARROW_PROTOBUF_BUILD_VERSION: v3.13.0
> -- ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
> -- ARROW_RE2_BUILD_VERSION: 2019-08-01
> -- ARROW_SNAPPY_BUILD_VERSION: 1.1.8
> -- ARROW_THRIFT_BUILD_VERSION: 0.12.0
> -- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
> -- ARROW_UTF8PROC_BUILD_VERSION: v2.5.0
> -- ARROW_ZLIB_BUILD_VERSION: 1.2.11
> -- ARROW_ZSTD_BUILD_VERSION: v1.4.5
> -- Looking for pthread.h
> -- Looking for pthread.h - found
> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
> -- Check if compiler accepts -pthread
> -- Check if compiler accepts -pthread - yes
> -- Found Threads: TRUE
> -- Looking for __SIZEOF_INT128__
> -- Looking for __SIZEOF_INT128__ - found
> -- Boost include dir: /tmp/RtmpcOhh4x/file86c71a6ed76f/boost_ep-prefix/src/boost_ep
> -- Boost libraries: boost_system_static;boost_filesystem_static
> -- Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.0.2k", minimum required is "1.0.2")
> -- Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
> -- Building with OpenSSL (Version: 1.0.2k) support
> Building Apache Thrift from source
> -- Building (vendored) jemalloc from source
> -- Building (vendored) mimalloc from source
> -- Building RapidJSON from source
> -- Building ZLIB from source
> -- Building RE2 from source
> -- Found hdfs.h at: /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp/thirdparty/hadoop/include/hdfs.h
> Building AWS C++ SDK from source
> -- Found CURL: /usr/lib64/libcurl.so (found version "7.29.0")
> -- Found AWS SDK headers: /tmp/RtmpcOhh4x/file86c71a6ed76f/awssdk_ep-install/include
> -- Found AWS SDK libraries: aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
> -- All bundled static libraries: thrift::thrift;jemalloc::jemalloc;mimalloc::mimalloc;ZLIB::ZLIB;re2::re2;aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
> -- CMAKE_C_FLAGS: -I/N/soft/rhel7/uuid/1.0.3/include -O3 -DNDEBUG -Wall -msse4.2
> -- CMAKE_CXX_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
> -- Looking for backtrace
> -- Looking for backtrace - found
> -- backtrace facility detected in default set of libraries
> -- Found Backtrace: /usr/include
> -- Creating bundled static library target arrow_bundled_dependencies at /tmp/RtmpcOhh4x/file86c71a6ed76f/release/libarrow_bundled_dependencies.a
> -- ---------------------------------------------------------------------
> -- Arrow version: 3.0.0
> --
> -- Build configuration summary:
> -- Generator: Ninja
> -- Build type: RELEASE
> -- Source directory: /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
> -- Install prefix: /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow/libarrow/arrow-3.0.0
> --
> -- Compile and link options:
> --
> -- ARROW_CXXFLAGS="" [default=""]
> -- Compiler flags to append when compiling Arrow
> -- ARROW_BUILD_STATIC=ON [default=ON]
> -- Build static libraries
> -- ARROW_BUILD_SHARED=OFF [default=ON]
> -- Build shared libraries
> -- ARROW_PACKAGE_KIND="" [default=""]
> -- Arbitrary string that identifies the kind of package
> -- (for informational purposes)
> -- ARROW_GIT_ID="" [default=""]
> -- The Arrow git commit id (if any)
> -- ARROW_GIT_DESCRIPTION="" [default=""]
> -- The Arrow git commit description (if any)
> -- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
> -- Exclude deprecated APIs from build
> -- ARROW_USE_CCACHE=ON [default=ON]
> -- Use ccache when compiling (if available)
> -- ARROW_USE_LD_GOLD=OFF [default=OFF]
> -- Use ld.gold for linking on Linux (if available)
> -- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
> -- Use precompiled headers when compiling
> -- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
> -- Compile-time SIMD optimization level
> -- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
> -- Max runtime SIMD optimization level
> -- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
> -- Arm64 arch and extensions
> -- ARROW_ALTIVEC=ON [default=ON]
> -- Build with Altivec if compiler has support
> -- ARROW_RPATH_ORIGIN=OFF [default=OFF]
> -- Build Arrow libraries with RATH set to $ORIGIN
> -- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
> -- Build Arrow libraries with install_name set to @rpath
> -- ARROW_GGDB_DEBUG=ON [default=ON]
> -- Pass -ggdb flag to debug builds
> --
> -- Test and benchmark options:
> --
> -- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
> -- Build the Arrow examples
> -- ARROW_BUILD_TESTS=OFF [default=OFF]
> -- Build the Arrow googletest unit tests
> -- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
> -- Enable timing-sensitive tests
> -- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
> -- Build the Arrow integration test executables
> -- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
> -- Build the Arrow micro benchmarks
> -- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
> -- Build the Arrow micro reference benchmarks
> -- ARROW_TEST_LINKAGE=static [default=shared|static]
> -- Linkage of Arrow libraries with unit tests executables.
> -- ARROW_FUZZING=OFF [default=OFF]
> -- Build Arrow Fuzzing executables
> -- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
> -- Enable unit tests which use large memory
> --
> -- Lint options:
> --
> -- ARROW_ONLY_LINT=OFF [default=OFF]
> -- Only define the lint and check-format targets
> -- ARROW_VERBOSE_LINT=OFF [default=OFF]
> -- If off, 'quiet' flags will be passed to linting tools
> -- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
> -- Build with C++ code coverage enabled
> --
> -- Checks options:
> --
> -- ARROW_TEST_MEMCHECK=OFF [default=OFF]
> -- Run the test suite using valgrind --tool=memcheck
> -- ARROW_USE_ASAN=OFF [default=OFF]
> -- Enable Address Sanitizer checks
> -- ARROW_USE_TSAN=OFF [default=OFF]
> -- Enable Thread Sanitizer checks
> -- ARROW_USE_UBSAN=OFF [default=OFF]
> -- Enable Undefined Behavior sanitizer checks
> --
> -- Project component options:
> --
> -- ARROW_BUILD_UTILITIES=OFF [default=OFF]
> -- Build Arrow commandline utilities
> -- ARROW_COMPUTE=ON [default=OFF]
> -- Build the Arrow Compute Modules
> -- ARROW_CSV=ON [default=OFF]
> -- Build the Arrow CSV Parser Module
> -- ARROW_CUDA=OFF [default=OFF]
> -- Build the Arrow CUDA extensions (requires CUDA toolkit)
> -- ARROW_DATASET=ON [default=OFF]
> -- Build the Arrow Dataset Modules
> -- ARROW_FILESYSTEM=ON [default=OFF]
> -- Build the Arrow Filesystem Layer
> -- ARROW_FLIGHT=OFF [default=OFF]
> -- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
> -- ARROW_GANDIVA=OFF [default=OFF]
> -- Build the Gandiva libraries
> -- ARROW_HDFS=OFF [default=OFF]
> -- Build the Arrow HDFS bridge
> -- ARROW_HIVESERVER2=OFF [default=OFF]
> -- Build the HiveServer2 client and Arrow adapter
> -- ARROW_IPC=ON [default=ON]
> -- Build the Arrow IPC extensions
> -- ARROW_JEMALLOC=ON [default=ON]
> -- Build the Arrow jemalloc-based allocator
> -- ARROW_JNI=OFF [default=OFF]
> -- Build the Arrow JNI lib
> -- ARROW_JSON=ON [default=OFF]
> -- Build Arrow with JSON support (requires RapidJSON)
> -- ARROW_MIMALLOC=ON [default=OFF]
> -- Build the Arrow mimalloc-based allocator
> -- ARROW_PARQUET=ON [default=OFF]
> -- Build the Parquet libraries
> -- ARROW_ORC=OFF [default=OFF]
> -- Build the Arrow ORC adapter
> -- ARROW_PLASMA=OFF [default=OFF]
> -- Build the plasma object store along with Arrow
> -- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
> -- Build the plasma object store java client
> -- ARROW_PYTHON=OFF [default=OFF]
> -- Build the Arrow CPython extensions
> -- ARROW_S3=ON [default=OFF]
> -- Build Arrow with S3 support (requires the AWS SDK for C++)
> -- ARROW_TENSORFLOW=OFF [default=OFF]
> -- Build Arrow with TensorFlow support enabled
> -- ARROW_TESTING=OFF [default=OFF]
> -- Build the Arrow testing libraries
> --
> -- Thirdparty toolchain options:
> --
> -- ARROW_DEPENDENCY_SOURCE=BUNDLED [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
> -- Method to use for acquiring arrow's build dependencies
> -- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
> -- Show output from ExternalProjects rather than just logging to files
> -- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
> -- Link to shared libraries
> -- ARROW_BOOST_USE_SHARED=OFF [default=ON]
> -- Rely on boost shared libraries where relevant
> -- ARROW_BROTLI_USE_SHARED=ON [default=ON]
> -- Rely on Brotli shared libraries where relevant
> -- ARROW_BZ2_USE_SHARED=ON [default=ON]
> -- Rely on Bz2 shared libraries where relevant
> -- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
> -- Rely on GFlags shared libraries where relevant
> -- ARROW_GRPC_USE_SHARED=ON [default=ON]
> -- Rely on gRPC shared libraries where relevant
> -- ARROW_LZ4_USE_SHARED=ON [default=ON]
> -- Rely on lz4 shared libraries where relevant
> -- ARROW_OPENSSL_USE_SHARED=ON [default=ON]
> -- Rely on OpenSSL shared libraries where relevant
> -- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
> -- Rely on Protocol Buffers shared libraries where relevant
> -- ARROW_THRIFT_USE_SHARED=ON [default=ON]
> -- Rely on thrift shared libraries where relevant
> -- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
> -- Rely on utf8proc shared libraries where relevant
> -- ARROW_SNAPPY_USE_SHARED=ON [default=ON]
> -- Rely on snappy shared libraries where relevant
> -- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
> -- Rely on utf8proc shared libraries where relevant
> -- ARROW_ZSTD_USE_SHARED=ON [default=ON]
> -- Rely on zstd shared libraries where relevant
> -- ARROW_USE_GLOG=OFF [default=OFF]
> -- Build libraries with glog support for pluggable logging
> -- ARROW_WITH_BACKTRACE=ON [default=ON]
> -- Build with backtrace support
> -- ARROW_WITH_BROTLI=OFF [default=OFF]
> -- Build with Brotli compression
> -- ARROW_WITH_BZ2=OFF [default=OFF]
> -- Build with BZ2 compression
> -- ARROW_WITH_LZ4=OFF [default=OFF]
> -- Build with lz4 compression
> -- ARROW_WITH_SNAPPY=OFF [default=OFF]
> -- Build with Snappy compression
> -- ARROW_WITH_ZLIB=ON [default=OFF]
> -- Build with zlib compression
> -- ARROW_WITH_ZSTD=OFF [default=OFF]
> -- Build with zstd compression
> -- ARROW_WITH_UTF8PROC=OFF [default=ON]
> -- Build with support for Unicode properties using the utf8proc library
> -- (only used if ARROW_COMPUTE is ON)
> -- ARROW_WITH_RE2=ON [default=ON]
> -- Build with support for regular expressions using the re2 library
> -- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
> --
> -- Parquet options:
> --
> -- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
> -- Depend only on Thirdparty headers to build libparquet.
> -- Always OFF if building binaries
> -- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
> -- Build the Parquet executable CLI tools. Requires static libraries to be built.
> -- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
> -- Build the Parquet examples. Requires static libraries to be built.
> -- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
> -- Build support for encryption. Fail if OpenSSL is not found
> --
> -- Gandiva options:
> --
> -- ARROW_GANDIVA_JAVA=OFF [default=OFF]
> -- Build the Gandiva JNI wrappers
> -- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
> -- Include -static-libstdc++ -static-libgcc when linking with
> -- Gandiva static libraries
> -- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
> -- Compiler flags to append when pre-compiling Gandiva operations
> --
> -- Advanced developer options:
> --
> -- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
> -- Compile with extra error context (line numbers, code)
> -- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
> -- If enabled install ONLY targets that have already been built. Please be
> -- advised that if this is enabled 'install' will fail silently on components
> -- that have not been built
> -- Outputting build configuration summary to /tmp/RtmpcOhh4x/file86c71a6ed76f/cmake_summary.json
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /tmp/RtmpcOhh4x/file86c71a6ed76f
> + /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake --build . --target install
> [1/130] Creating directories for 'mimalloc_ep'
> [2/130] Creating directories for 'zlib_ep'
> [3/130] Creating directories for 'aws_checksums_ep'
> [4/130] Creating directories for 'aws_c_common_ep'
> [5/130] Creating directories for 'boost_ep'
> [6/130] Creating directories for 're2_ep'
> [7/130] Creating directories for 'jemalloc_ep'
> [8/130] Creating directories for 'rapidjson_ep'
> [9/130] Performing download step (download, verify and extract) for 'mimalloc_ep'
> -- Downloading...
> dst='/tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
> timeout='none'
> inactivity timeout='none'
> -- Using src='https://github.com/microsoft/mimalloc/archive/v1.6.4.tar.gz'
> -- [download 100% complete]
> -- [download 1% complete]
> -- [download 3% complete]
> -- [download 5% complete]
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> -- [download 27% complete]
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> -- [download 76% complete]
> -- [download 97% complete]
> -- [download 100% complete]
> -- Downloading... done
> -- extracting...
> src='/tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
> dst='/tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/mimalloc_ep'
> -- extracting... [tar xfz]
> -- extracting... [analysis]
> -- extracting... [rename]
> -- extracting... [clean up]
> -- extracting... done
> [10/130] No update step for 'mimalloc_ep'
> [11/130] No patch step for 'mimalloc_ep'
> [12/130] Performing download step (download, verify and extract) for 'aws_checksums_ep'
> -- aws_checksums_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-download-*.log
> [13/130] Performing download step (download, verify and extract) for 'jemalloc_ep'
> -- jemalloc_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
> [14/130] No update step for 'aws_checksums_ep'
> [15/130] No update step for 'jemalloc_ep'
> [16/130] Performing download step (download, verify and extract) for 're2_ep'
> -- re2_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
> [17/130] No patch step for 'aws_checksums_ep'
> [18/130] Performing patch step for 'jemalloc_ep'
> [19/130] No update step for 're2_ep'
> [20/130] Performing download step (download, verify and extract) for 'rapidjson_ep'
> -- rapidjson_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
> [21/130] No patch step for 're2_ep'
> [22/130] Performing download step (download, verify and extract) for 'zlib_ep'
> -- zlib_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-download-*.log
> [23/130] No update step for 'rapidjson_ep'
> [24/130] Performing download step (download, verify and extract) for 'aws_c_common_ep'
> -- aws_c_common_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-download-*.log
> [25/130] No update step for 'zlib_ep'
> [26/130] No patch step for 'rapidjson_ep'
> [27/130] No update step for 'aws_c_common_ep'
> [28/130] No patch step for 'zlib_ep'
> [29/130] No patch step for 'aws_c_common_ep'
> [30/130] Performing download step (download, verify and extract) for 'boost_ep'
> -- boost_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
> [31/130] No update step for 'boost_ep'
> [32/130] No patch step for 'boost_ep'
> [33/130] No configure step for 'boost_ep'
> [34/130] No build step for 'boost_ep'
> [35/130] No install step for 'boost_ep'
> [36/130] Completed 'boost_ep'
> [37/130] Creating directories for 'thrift_ep'
> [38/130] Performing configure step for 'aws_checksums_ep'
> -- aws_checksums_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-configure-*.log
> [39/130] Performing configure step for 'rapidjson_ep'
> -- rapidjson_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
> [40/130] Performing configure step for 're2_ep'
> -- re2_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
> [41/130] Performing build step for 'rapidjson_ep'
> -- rapidjson_ep build command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
> [42/130] Performing build step for 'aws_checksums_ep'
> FAILED: aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build awssdk_ep-install/lib/libaws-checksums.a
> cd /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-build && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -P /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-RELEASE.cmake && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -E touch /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build
> CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-RELEASE.cmake:37 (message):
> Command failed: 1
> '/tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake' '--build' '.'
> See also
> /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-*.log
> -- stdout output is:
> [1/12] Building C object CMakeFiles/aws-checksums.dir/source/arm/crc32c_arm.c.o
> [2/12] Building C object CMakeFiles/aws-checksums.dir/source/arm/cpuid_arm.c.o
> [3/12] Building C object CMakeFiles/aws-checksums.dir/source/crc.c.o
> [4/12] Building C object CMakeFiles/aws-checksums.dir/source/cpuid_generic.c.o
> [5/12] Building C object CMakeFiles/aws-checksums.dir/source/crc_jni.c.o
> [6/12] Building C object CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o
> FAILED: CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/include -I/tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/tests -I/N/soft/rhel7/uuid/1.0.3/include -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -I/N/soft/rhel7/uuid/1.0.3/include -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -fPIC -std=gnu99 -MD -MT CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o -MF CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o.d -o CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/source/intel/crc32c_sse42_asm.c
> /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/source/intel/crc32c_sse42_asm.c(305) (col. 92): catastrophic error: can't allocate register(s) " rsp rip zmm16 zmm17 zmm18 zmm19 zmm20 zmm21 zmm22 zmm23 zmm24 zmm25 zmm26 zmm27 zmm28 zmm29 zmm30 zmm31" for asm instruction
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/source/intel/crc32c_sse42_asm.c (code 4)
> [7/12] Building C object CMakeFiles/aws-checksums.dir/source/intel/cpuid.c.o
> [8/12] Building C object CMakeFiles/aws-checksums-tests.dir/tests/crc_test.c.o
> [9/12] Building C object CMakeFiles/aws-checksums-tests.dir/tests/run_tests.c.o
> [10/12] Building C object CMakeFiles/aws-checksums.dir/source/crc_sw.c.o
> ninja: build stopped: subcommand failed.
> -- stderr output is:
> CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-RELEASE.cmake:47 (message):
> Stopping after outputting logs.
> [43/130] Performing install step for 'rapidjson_ep'
> -- rapidjson_ep install command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
> [44/130] Performing download step (download, verify and extract) for 'thrift_ep'
> -- thrift_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
> [45/130] Performing configure step for 'mimalloc_ep'
> -- The C compiler identification is Intel 19.0.5.20190815
> -- The CXX compiler identification is Intel 19.0.5.20190815
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Use the C++ compiler to compile (MI_USE_CXX=ON)
> --
> -- Library base name: mimalloc
> -- Build type : release
> -- Install directory: /tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6
> -- Build targets : static
> --
> -- Configuring done
> -- Generating done
> CMake Warning:
> Manually-specified variables were not used by the project:
> CMAKE_EXPORT_NO_PACKAGE_REGISTRY
> CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
> -- Build files have been written to: /tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/mimalloc_ep-build
> [46/130] Performing configure step for 'zlib_ep'
> -- zlib_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-configure-*.log
> [47/130] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_1_cxx.cxx.o
> [48/130] Performing build step for 're2_ep'
> FAILED: re2_ep-prefix/src/re2_ep-stamp/re2_ep-build re2_ep-install/lib/libre2.a
> cd /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-build && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -P /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-RELEASE.cmake && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -E touch /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build
> CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-RELEASE.cmake:37 (message):
> Command failed: 1
> '/tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake' '--build' '.'
> See also
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
> -- stdout output is:
> ...skipping to end...
> 2_ep-prefix/src/re2_ep/re2/testing/tester.h(14),
> from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/exhaustive_tester.cc(20):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/exhaustive_tester.cc (code 2)
> [34/95] Building CXX object CMakeFiles/re2.dir/re2/compile.cc.o
> FAILED: CMakeFiles/re2.dir/re2/compile.cc.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/re2.dir/re2/compile.cc.o -MF CMakeFiles/re2.dir/re2/compile.cc.o.d -o CMakeFiles/re2.dir/re2/compile.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/compile.cc
> In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/compile.cc(19):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/compile.cc (code 2)
> [35/95] Building CXX object CMakeFiles/exhaustive2_test.dir/re2/testing/exhaustive2_test.cc.o
> [36/95] Building CXX object CMakeFiles/re2.dir/re2/dfa.cc.o
> FAILED: CMakeFiles/re2.dir/re2/dfa.cc.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/re2.dir/re2/dfa.cc.o -MF CMakeFiles/re2.dir/re2/dfa.cc.o.d -o CMakeFiles/re2.dir/re2/dfa.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/dfa.cc
> In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/dfa.cc(45):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/dfa.cc (code 2)
> [37/95] Building CXX object CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o
> FAILED: CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o -MF CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o.d -o CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/dfa_test.cc
> In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/dfa_test.cc(13):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/dfa_test.cc (code 2)
> [38/95] Building CXX object CMakeFiles/required_prefix_test.dir/re2/testing/required_prefix_test.cc.o
> [39/95] Building CXX object CMakeFiles/re2.dir/re2/filtered_re2.cc.o
> [40/95] Building CXX object CMakeFiles/exhaustive3_test.dir/re2/testing/exhaustive3_test.cc.o
> [41/95] Building CXX object CMakeFiles/testing.dir/re2/testing/null_walker.cc.o
> [42/95] Building CXX object CMakeFiles/testing.dir/re2/testing/tester.cc.o
> FAILED: CMakeFiles/testing.dir/re2/testing/tester.cc.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/testing.dir/re2/testing/tester.cc.o -MF CMakeFiles/testing.dir/re2/testing/tester.cc.o.d -o CMakeFiles/testing.dir/re2/testing/tester.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.cc
> In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.h(14),
> from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.cc(16):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.cc (code 2)
> [43/95] Building CXX object CMakeFiles/testing.dir/re2/testing/string_generator.cc.o
> [44/95] Building CXX object CMakeFiles/parse_test.dir/util/test.cc.o
> [45/95] Building CXX object CMakeFiles/regexp_test.dir/util/test.cc.o
> [46/95] Building CXX object CMakeFiles/charclass_test.dir/util/test.cc.o
> [47/95] Building CXX object CMakeFiles/possible_match_test.dir/util/test.cc.o
> [48/95] Building CXX object CMakeFiles/re2_arg_test.dir/util/test.cc.o
> [49/95] Building CXX object CMakeFiles/search_test.dir/util/test.cc.o
> [50/95] Building CXX object CMakeFiles/re2_test.dir/util/test.cc.o
> [51/95] Building CXX object CMakeFiles/re2.dir/re2/mimics_pcre.cc.o
> [52/95] Building CXX object CMakeFiles/re2.dir/re2/tostring.cc.o
> [53/95] Building CXX object CMakeFiles/search_test.dir/re2/testing/search_test.cc.o
> FAILED: CMakeFiles/search_test.dir/re2/testing/search_test.cc.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/search_test.dir/re2/testing/search_test.cc.o -MF CMakeFiles/search_test.dir/re2/testing/search_test.cc.o.d -o CMakeFiles/search_test.dir/re2/testing/search_test.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/search_test.cc
> In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/search_test.cc(6):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/search_test.cc (code 2)
> [54/95] Building CXX object CMakeFiles/charclass_test.dir/re2/testing/charclass_test.cc.o
> [55/95] Building CXX object CMakeFiles/simplify_test.dir/re2/testing/simplify_test.cc.o
> [56/95] Building CXX object CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o
> FAILED: CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o
> /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o -MF CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o.d -o CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/possible_match_test.cc
> In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/possible_match_test.cc(12):
> /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
> static_assert(std::is_pod<T>::value,
> ^
> detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"
> compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/possible_match_test.cc (code 2)
> [57/95] Building CXX object CMakeFiles/testing.dir/util/pcre.cc.o
> [58/95] Building CXX object CMakeFiles/set_test.dir/re2/testing/set_test.cc.o
> [59/95] Building CXX object CMakeFiles/re2_arg_test.dir/re2/testing/re2_arg_test.cc.o
> [60/95] Building CXX object CMakeFiles/re2.dir/re2/simplify.cc.o
> [61/95] Building CXX object CMakeFiles/re2.dir/re2/prefilter.cc.o
> [62/95] Building CXX object CMakeFiles/filtered_re2_test.dir/re2/testing/filtered_re2_test.cc.o
> [63/95] Building CXX object CMakeFiles/testing.dir/re2/testing/regexp_generator.cc.o
> [64/95] Building CXX object CMakeFiles/parse_test.dir/re2/testing/parse_test.cc.o
> [65/95] Building CXX object CMakeFiles/re2.dir/re2/prefilter_tree.cc.o
> [66/95] Building CXX object CMakeFiles/regexp_test.dir/re2/testing/regexp_test.cc.o
> [67/95] Building CXX object CMakeFiles/re2.dir/re2/parse.cc.o
> [68/95] Building CXX object CMakeFiles/re2.dir/re2/regexp.cc.o
> [69/95] Building CXX object CMakeFiles/re2_test.dir/re2/testing/re2_test.cc.o
> ninja: build stopped: subcommand failed.
> -- stderr output is:
> CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-RELEASE.cmake:47 (message):
> Stopping after outputting logs.
> [49/130] Performing configure step for 'aws_c_common_ep'
> -- aws_c_common_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-configure-*.log
> [50/130] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_0_cxx.cxx.o
> [51/130] Performing configure step for 'jemalloc_ep'
> -- jemalloc_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
> ninja: build stopped: subcommand failed.
> + popd
> /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow
> ------------------------- NOTE ---------------------------
> See https://arrow.apache.org/docs/r/articles/install.html
> for help installing Arrow C++ libraries
> ---------------------------------------------------------
> ** libs
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c array.cpp -o array.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c array_from_vector.cpp -o array_from_vector.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c array_to_vector.cpp -o array_to_vector.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c arraydata.cpp -o arraydata.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c arrowExports.cpp -o arrowExports.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c buffer.cpp -o buffer.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c chunkedarray.cpp -o chunkedarray.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c compression.cpp -o compression.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c compute.cpp -o compute.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c csv.cpp -o csv.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c dataset.cpp -o dataset.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c datatype.cpp -o datatype.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c expression.cpp -o expression.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c feather.cpp -o feather.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c field.cpp -o field.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c filesystem.cpp -o filesystem.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c io.cpp -o io.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c json.cpp -o json.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c memorypool.cpp -o memorypool.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c message.cpp -o message.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c parquet.cpp -o parquet.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c py-to-r.cpp -o py-to-r.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c recordbatch.cpp -o recordbatch.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c recordbatchreader.cpp -o recordbatchreader.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c recordbatchwriter.cpp -o recordbatchwriter.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c scalar.cpp -o scalar.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c schema.cpp -o schema.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c symbols.cpp -o symbols.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c table.cpp -o table.o
> icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c threadpool.cpp -o threadpool.o
> icpc -std=gnu++11 -shared -L/N/soft/rhel7/r/3.6.0/lib64/R/lib -L//N/soft/rhel7/zlib/gnu/1.2.11/lib -L/N/soft/rhel7/bzip2/1.0.6/lib -L/N/soft/rhel7/xz/5.2.4/lib -L/N/soft/rhel7/pcre/8.40/lib -L/N/soft/rhel7/cairo/1.15.4/lib -lcairo -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o -L/N/soft/rhel7/r/3.6.0/lib64/R/lib -lR
> installing to /geode2/home/u070/rrokde/Carbonate/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> The downloaded source packages are in
> ‘/tmp/Rtmp8e3zPn/downloaded_packages’
> Attaching package: ‘arrow’
> The following object is masked from ‘package:utils’:
> timestamp
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