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Posted to issues@arrow.apache.org by "ASF GitHub Bot (JIRA)" <ji...@apache.org> on 2017/10/03 21:42:00 UTC
[jira] [Commented] (ARROW-1584) [PYTHON] serialize_pandas on empty
dataframe
[ https://issues.apache.org/jira/browse/ARROW-1584?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16190393#comment-16190393 ]
ASF GitHub Bot commented on ARROW-1584:
---------------------------------------
GitHub user wesm opened a pull request:
https://github.com/apache/arrow/pull/1155
ARROW-1584: [C++/Python] Support Null type in IPC round trips, fix serialize_pandas on empty DataFrame
cc @TomAugspurger @cpcloud -- this turned out to be caused by the index in the empty DataFrame having null type:
```
In [3]: arr = pa.array([])
In [4]: arr.type
Out[4]: DataType(null)
In [5]: arr = pa.array([None, None, None])
In [6]: arr
Out[6]:
<pyarrow.lib.NullArray object at 0x7f28d3d205e8>
[
NA,
NA,
NA
]
```
This type had been unhandled in the IPC machinery, so this resolves ARROW-1637. We need to implement integration tests for this type to make sure such data can be accurately messages between Java and C++/Python
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/wesm/arrow ARROW-1584
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/arrow/pull/1155.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #1155
----
commit ce7c7a56370eb4a957c65cfd5a26a04319658d36
Author: Wes McKinney <we...@twosigma.com>
Date: 2017-10-03T21:38:05Z
Support Null type in IPC round trips, fix serialize_pandas on empty DataFrame
Change-Id: I5dfb10ea913815d71f11743cceff731101b85d6e
----
> [PYTHON] serialize_pandas on empty dataframe
> --------------------------------------------
>
> Key: ARROW-1584
> URL: https://issues.apache.org/jira/browse/ARROW-1584
> Project: Apache Arrow
> Issue Type: Bug
> Components: Python
> Affects Versions: 0.7.0
> Reporter: Tom Augspurger
> Assignee: Wes McKinney
> Priority: Minor
> Labels: pull-request-available, python, serialization
> Fix For: 0.8.0
>
>
> This code
> {code:python}
> import pandas as pd
> import pyarrow as pa
> pa.serialize_pandas(pd.DataFrame())
> {code}
> Raises
> {code}
> ---------------------------------------------------------------------------
> ArrowNotImplementedError Traceback (most recent call last)
> <ipython-input-71-ad21add45f0d> in <module>()
> ----> 1 pa.serialize_pandas(pd.DataFrame())
> ~/Envs/dask-dev/lib/python3.6/site-packages/pyarrow/ipc.py in serialize_pandas(df)
> 158 sink = pa.BufferOutputStream()
> 159 writer = pa.RecordBatchStreamWriter(sink, batch.schema)
> --> 160 writer.write_batch(batch)
> 161 writer.close()
> 162 return sink.get_result()
> pyarrow/ipc.pxi in pyarrow.lib._RecordBatchWriter.write_batch (/Users/travis/build/apache/arrow-dist/arrow/python/build/temp.macosx-10.6-intel-3.6/lib.cxx:59238)()
> pyarrow/error.pxi in pyarrow.lib.check_status (/Users/travis/build/apache/arrow-dist/arrow/python/build/temp.macosx-10.6-intel-3.6/lib.cxx:8113)()
> ArrowNotImplementedError: Unable to convert type: null
> {code}
> Presumably {{pa.deserialize_pandas}} will need a fix as well.
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