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Posted to jira@arrow.apache.org by "Neal Richardson (Jira)" <ji...@apache.org> on 2020/12/09 01:22:00 UTC
[jira] [Commented] (ARROW-10856) [R][C++] Can't get the required
C++ run time library installed correctly
[ https://issues.apache.org/jira/browse/ARROW-10856?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17246230#comment-17246230 ]
Neal Richardson commented on ARROW-10856:
-----------------------------------------
Since you're describing compiler mismatch, and the installation output suggests you're on CentOS 7, this sounds like ARROW-10780. The revised documentation as of that pull request is at https://ursalabs.org/arrow-r-nightly/articles/install.html#known-installation-issues. Does that help?
> [R][C++] Can't get the required C++ run time library installed correctly
> ------------------------------------------------------------------------
>
> Key: ARROW-10856
> URL: https://issues.apache.org/jira/browse/ARROW-10856
> Project: Apache Arrow
> Issue Type: Bug
> Reporter: Yi Hsiao
> Priority: Major
>
> When I tried to use the example command like this in my R session:
> {code:java}
> df <- read_parquet(system.file("v0.7.1.parquet", package="arrow")){code}
>
> It shows error:
> {code:java}
> > df <- read_parquet(system.file("v0.7.1.parquet", package="arrow"))
> Error in io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.{code}
> I did try to install it with `arrow::install_arrow()` and it finishes successfully.
> However, I still get the same error message mentioned above after that.
> My session info is here:
>
> {code:java}
> > sessioninfo::session_info()
> ─ Session info ───────────────────────────────────────────────────────────────
> setting value
> version R version 4.0.2 (2020-06-22)
> os CentOS Linux 7 (Core)
> system x86_64, linux-gnu
> ui X11
> language (EN)
> collate en_US.UTF-8
> ctype en_US.UTF-8
> tz America/Detroit
> date 2020-12-08
> ─ Packages ───────────────────────────────────────────────────────────────────
> package * version date lib source
> arrow * 2.0.0 2020-10-20 [1] CRAN (R 4.0.2)
> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2)
> bit 4.0.4 2020-08-04 [1] CRAN (R 4.0.2)
> bit64 4.0.5 2020-08-30 [1] CRAN (R 4.0.2)
> cli 2.2.0 2020-11-20 [1] CRAN (R 4.0.2)
> crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.2)
> fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.2)
> glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2)
> magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.2)
> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.2)
> R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.2)
> rlang 0.4.9 2020-11-26 [1] CRAN (R 4.0.2)
> sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.2)
> tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.2)
> vctrs 0.3.5 2020-11-17 [1] CRAN (R 4.0.2)
> withr 2.3.0 2020-09-22 [1] CRAN (R 4.0.2)
> [1] /home/yihsiao/R/x86_64-pc-linux-gnu-library/4.0
> [2] /sw/arcts/centos7/stacks/gcc/8.2.0/R/4.0.2/lib64/R/library
> {code}
>
> One thing I notice is that when installing the run time library, it doesn't get the correct compiler I have for C++ (8.2.0 rather than some version < 4.9)
>
> {code:java}
> > arrow::install_arrow()
> Installing package into '/home/yihsiao/R/x86_64-pc-linux-gnu-library/4.0'
> (as 'lib' is unspecified)
> trying URL 'https://cloud.r-project.org/src/contrib/arrow_2.0.0.tar.gz'
> Content type 'application/x-gzip' length 322592 bytes (315 KB)
> ==================================================
> downloaded 315 KB
> * installing *source* package 'arrow' ...
> ** package 'arrow' successfully unpacked and MD5 sums checked
> ** using staged installation
> *** No C++ binaries found for centos-7
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> **** cmake
> **** S3 support not available for gcc < 4.9; building with ARROW_S3=OFF
> **** arrow
> {code}
>
>
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