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Posted to issues@arrow.apache.org by "Nicola Crane (Jira)" <ji...@apache.org> on 2022/02/21 13:06:00 UTC
[jira] [Created] (ARROW-15743) [R] `skip` not connected up to `skip_rows` on open_dataset despite error messages indicating otherwise
Nicola Crane created ARROW-15743:
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Summary: [R] `skip` not connected up to `skip_rows` on open_dataset despite error messages indicating otherwise
Key: ARROW-15743
URL: https://issues.apache.org/jira/browse/ARROW-15743
Project: Apache Arrow
Issue Type: Bug
Components: R
Reporter: Nicola Crane
If I open a dataset of CSVs with a schema, the error message tells me to supply {{`skip = 1`}} if my data contains a header row (to prevent it being read in as data), but only {{skip_rows = 1}} actually works.
{code:r}
library(arrow)
library(dplyr)
td <- tempfile()
dir.create(td)
write_dataset(mtcars, td, format = "csv")
schema <- schema(mpg = float64(), cyl = float64(), disp = float64(), hp = float64(),
drat = float64(), wt = float64(), qsec = float64(), vs = float64(),
am = float64(), gear = float64(), carb = float64())
open_dataset(td, format = "csv", schema = schema) %>%
collect()
#> Error in `handle_csv_read_error()`:
#> ! Invalid: Could not open CSV input source '/tmp/RtmppZbpeF/file6cec135ed29c/part-0.csv': Invalid: In CSV column #0: Row #1: CSV conversion error to double: invalid value 'mpg'
#> /home/nic2/arrow/cpp/src/arrow/csv/converter.cc:550 decoder_.Decode(data, size, quoted, &value)
#> /home/nic2/arrow/cpp/src/arrow/csv/parser.h:123 status
#> /home/nic2/arrow/cpp/src/arrow/csv/converter.cc:554 parser.VisitColumn(col_index, visit)
#> /home/nic2/arrow/cpp/src/arrow/csv/reader.cc:463 arrow::internal::UnwrapOrRaise(maybe_decoded_arrays)
#> /home/nic2/arrow/cpp/src/arrow/compute/exec/exec_plan.cc:445 iterator_.Next()
#> /home/nic2/arrow/cpp/src/arrow/record_batch.cc:336 ReadNext(&batch)
#> /home/nic2/arrow/cpp/src/arrow/record_batch.cc:347 ReadAll(&batches)
#> ℹ If you have supplied a schema and your data contains a header row, you should supply the argument `skip = 1` to prevent the header being read in as data.
open_dataset(td, format = "csv", schema = schema, skip = 1) %>%
collect()
#> Error: The following option is supported in "read_delim_arrow" functions but not yet supported here: "skip"
open_dataset(td, format = "csv", schema = schema, skip_rows = 1) %>%
collect()
#> # A tibble: 32 × 11
#> mpg cyl disp hp drat wt qsec vs am gear carb
#> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 21 6 160 110 3.9 2.62 16.5 0 1 4 4
#> 2 21 6 160 110 3.9 2.88 17.0 0 1 4 4
#> 3 22.8 4 108 93 3.85 2.32 18.6 1 1 4 1
#> 4 21.4 6 258 110 3.08 3.22 19.4 1 0 3 1
#> 5 18.7 8 360 175 3.15 3.44 17.0 0 0 3 2
#> 6 18.1 6 225 105 2.76 3.46 20.2 1 0 3 1
#> 7 14.3 8 360 245 3.21 3.57 15.8 0 0 3 4
#> 8 24.4 4 147. 62 3.69 3.19 20 1 0 4 2
#> 9 22.8 4 141. 95 3.92 3.15 22.9 1 0 4 2
#> 10 19.2 6 168. 123 3.92 3.44 18.3 1 0 4 4
#> # … with 22 more rows
{code}
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