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Posted to reviews@spark.apache.org by junyangq <gi...@git.apache.org> on 2016/07/26 01:08:36 UTC
[GitHub] spark pull request #14357: [SPARK-16727][SparkR] Fix expected test output of...
GitHub user junyangq opened a pull request:
https://github.com/apache/spark/pull/14357
[SPARK-16727][SparkR] Fix expected test output of describe and summary functions
## What changes were proposed in this pull request?
Fix expected test output of describe and summary functions. String columns are not summarized in the output.
## How was this patch tested?
SparkR unit test.
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/junyangq/spark SPARK-16727
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/spark/pull/14357.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #14357
----
commit f7d02ce8ad557ff68ac61a052a47d1f8d023aa58
Author: Junyang Qian <ju...@databricks.com>
Date: 2016-07-26T00:41:32Z
fix expected output in test block of describe and summary functions
----
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14357
**[Test build #62852 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62852/consoleFull)** for PR 14357 at commit [`f7d02ce`](https://github.com/apache/spark/commit/f7d02ce8ad557ff68ac61a052a47d1f8d023aa58).
* This patch passes all tests.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/14357
Merged build finished. Test PASSed.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
I see. That seems 2.0 branch.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Hi, @shivaram.
Sorry, but what is the problem?
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Hi, @junyangq .
Could you give me some pointer to understand the current context? :)
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
In fact, `count`, `min`, and `max` is supported officially for Scala/Python/R.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
@junyangq . Currently, you are at the most recent master build, right?
And, SparkR does not show the `name` column as a result of `describe` command.
I'm wondering the result of `spark-shell` on your systems. Could you run the following command in spark-shell?
```scala
scala> spark.read.json("examples/src/main/resources/people.json").describe().show()
```
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
I see. Thank you for pointing that out :) I'll close the PR.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Oh, let me try this time. Thank you for double-checking, @junyangq .
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14357
I think this is related to https://github.com/apache/spark/commit/142df4834bc33dc7b84b626c6ee3508ab1abe015
cc @dongjoon-hyun
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
I think I ran the test under the master branch though... Let me double check :)
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14357
@junyangq Any idea how the tests were passing on Jenkins before this fix ?
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
It's my pleasure. See you later around Apache Spark. :)
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Actually, you can see the Jenkins log, too. There is no problem with the current R testsuite.
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62858/consoleFull
FYI, I'm using JDK 1.8.0_102 and Jenkins is using JDK 1.7.x.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Never. I did that in order to make it sure. I don't do it frequently.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
@shivaram I'm also curious...The issue arised when I ran the test locally.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
Hmm... It doesn't show the name column either.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
I think you did something wrong. :)
Could you close this PR?
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Thank you, @junyangq .
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/14357
Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/62852/
Test PASSed.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
String columns works for `min` and `max` summarization.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
At the most recent master build, I did the following things and all tests are passed.
```
$ git clean -fdx
$ ./build/sbt -Pyarn -Phadoop-2.3 -Pkinesis-asl -Phive-thriftserver -Phive -Psparkr package streaming-kafka-0-8-assembly/assembly streaming-flume-assembly/assembly streaming-kinesis-asl-assembly/assembly
$ R/install-dev.sh
$ R/run-tests.sh
...
DONE ===========================================================================
Tests passed.
```
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
I see. Which version is it?
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
Hi, @shivaram .
It's due to the branch difference.
The PR is merged to the master only 17 days ago.
> Thanks - merging in master.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
If you use `-fdx`, it removes IDE like Intellij settings, too.
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
@dongjoon-hyun That makes sense. That's why I feel confused about the output on my local machine...
`> collect(describe(read.json('examples/src/main/resources/people.json')))
summary age
1 count 2
2 mean 24.5
3 stddev 7.7781745930520225
4 min 19
5 max 30`
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[GitHub] spark pull request #14357: [SPARK-16727][SparkR] Fix expected test output of...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq closed the pull request at:
https://github.com/apache/spark/pull/14357
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by dongjoon-hyun <gi...@git.apache.org>.
Github user dongjoon-hyun commented on the issue:
https://github.com/apache/spark/pull/14357
```r
> collect(describe(read.json('examples/src/main/resources/people.json')))
summary age name
1 count 2 3
2 mean 24.5 <NA>
3 stddev 7.7781745930520225 <NA>
4 min 19 Andy
5 max 30 Michael
```
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14357
**[Test build #62852 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62852/consoleFull)** for PR 14357 at commit [`f7d02ce`](https://github.com/apache/spark/commit/f7d02ce8ad557ff68ac61a052a47d1f8d023aa58).
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
Yeah sure, but just wondering if the clean and additional arguments something we should normally do?
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[GitHub] spark issue #14357: [SPARK-16727][SparkR] Fix expected test output of descri...
Posted by junyangq <gi...@git.apache.org>.
Github user junyangq commented on the issue:
https://github.com/apache/spark/pull/14357
I merged the most recent master branch, rebuilt and installed the package, but the test failed at the same place. @dongjoon-hyun
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