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Posted to commits@ctakes.apache.org by ch...@apache.org on 2012/07/16 19:13:38 UTC
svn commit: r1362140 - in /incubator/ctakes/site/trunk:
content/ctakes/community-faqs.mdtext content/ctakes/developer-faqs.mdtext
content/ctakes/index.mdtext content/ctakes/mailing-lists.mdtext
content/ctakes/people.mdtext templates/skeleton.html
Author: chenpei
Date: Mon Jul 16 17:13:37 2012
New Revision: 1362140
URL: http://svn.apache.org/viewvc?rev=1362140&view=rev
Log:
https://issues.apache.org/jira/browse/CTAKES-5
Updated skeleton and css with one similar to odftoolkit.
Updated people to include mentors.
Updated component list to include cTAKES components from SHARPn f2f.
Added:
incubator/ctakes/site/trunk/content/ctakes/developer-faqs.mdtext
Modified:
incubator/ctakes/site/trunk/content/ctakes/community-faqs.mdtext
incubator/ctakes/site/trunk/content/ctakes/index.mdtext
incubator/ctakes/site/trunk/content/ctakes/mailing-lists.mdtext
incubator/ctakes/site/trunk/content/ctakes/people.mdtext
incubator/ctakes/site/trunk/templates/skeleton.html
Modified: incubator/ctakes/site/trunk/content/ctakes/community-faqs.mdtext
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/content/ctakes/community-faqs.mdtext?rev=1362140&r1=1362139&r2=1362140&view=diff
==============================================================================
--- incubator/ctakes/site/trunk/content/ctakes/community-faqs.mdtext (original)
+++ incubator/ctakes/site/trunk/content/ctakes/community-faqs.mdtext Mon Jul 16 17:13:37 2012
@@ -20,4 +20,4 @@ Notice: Licensed to the Apache Softwa
If you want to report a bug, please create issue on our [JIRA][1].
- [1]: https://issues.apache.org/jira/browse/ODFTOOLKIT
\ No newline at end of file
+ [1]: https://issues.apache.org/jira/browse/ctakes
\ No newline at end of file
Added: incubator/ctakes/site/trunk/content/ctakes/developer-faqs.mdtext
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/content/ctakes/developer-faqs.mdtext?rev=1362140&view=auto
==============================================================================
--- incubator/ctakes/site/trunk/content/ctakes/developer-faqs.mdtext (added)
+++ incubator/ctakes/site/trunk/content/ctakes/developer-faqs.mdtext Mon Jul 16 17:13:37 2012
@@ -0,0 +1,60 @@
+Title: Developer FAQs
+Notice: Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+ .
+ http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+##How do I edit this website?
+
+The pages on this website are written in [markdown syntax][1] and stored in SVN at
+[https://svn.apache.org/repos/asf/incubator/ctakes/site][2]
+
+Via integration with the Apache CMS, it is possible to edit, stage and publish
+website updates from the command line, or by using a web-based interface.
+
+Information on deeper website development is found on the [Website Development][10] page.
+
+##I've just been voted in as a Committer. What do I need to do?
+
+First, congratulations. Your contributions to the project have been noted and we
+hope that as a Committer you will be even more active.
+
+But before you are officially given Committer permissions, there are a few
+administrative steps that you will need to complete.
+
+ 1. Submit a signed [ICLA] [4] to Apache.
+ 1. Wait for the ICLA to be received and recorded by Apache. You will know
+when this has occurred when your name appears in the [Unlisted ICLAs] [5] section
+on the Apache Committers page. This could take a couple of days, longer if you
+submitted the ICLA via post.
+ 1. Once the your ICLA has been recorded, you should send a note to the [PPMC] [6]
+and request an Apache account. You will want to include your full name and email address,
+as you entered in the ICLA, as well as your preferred userid. Please [check first] [7]
+that your preferred userid is not already in use by another Apache Committer.
+ 1. Once your Apache account has been created, you will receive an email with
+further instructions for setting up your account. This may take a couple of days.
+ 1. If you were also voted as a PPMC member, you should then [subscribe] [8] to the
+PPMC's private mailing list.
+ 1. Finally, you should read the ["Guide for new committers"] [9]
+
+ [1]: http://www.simpleeditions.com/59001/markdown-an-introduction
+ [2]: https://svn.apache.org/repos/asf/incubator/cTAKES/site
+ [3]: http://incubator.apache.org/cTAKES/edit-cms.html
+ [4]: http://www.apache.org/licenses/icla.txt
+ [5]: http://people.apache.org/committer-index.html#unlistedclas
+ [6]: mailto:ctakes-private@incubator.apache.org
+ [7]: http://people.apache.org/committer-index.html
+ [8]: mailto:ctakes-private-subscribe@incubator.apache.org
+ [9]: http://www.apache.org/dev/new-committers-guide.html
\ No newline at end of file
Modified: incubator/ctakes/site/trunk/content/ctakes/index.mdtext
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/content/ctakes/index.mdtext?rev=1362140&r1=1362139&r2=1362140&view=diff
==============================================================================
--- incubator/ctakes/site/trunk/content/ctakes/index.mdtext (original)
+++ incubator/ctakes/site/trunk/content/ctakes/index.mdtext Mon Jul 16 17:13:37 2012
@@ -18,22 +18,26 @@ Notice: Licensed to the Apache Softwa
# Welcome
-Welcome to the Apache cTAKES.
+Welcome to Apache cTAKES.
Apache cTAKES: clinical Text Analysis and Knowledge Extraction System is an open-source natural language processing system for information extraction from electronic medical record clinical free-text. It processes clinical notes, identifying types of clinical named entitiesâââdrugs, diseases/disorders, signs/symptoms, anatomical sites and procedures. Each named entity has attributes for the text span, the ontology mapping code, context (family history of, current, unrelated to patient), and negated/not negated.
Apache cTAKES was built using the UIMA Unstructured Information Management Architecture framework and OpenNLP natural language processing toolkit. Its components are specifically trained for the clinical domain, and create rich linguistic and semantic annotations that can be utilized by clinical decision support systems and clinical research.
These components include:
-
- - Sentence boundary detector
- - Rule-based tokenizer to separate punctuations from words
- - Normalizer
- - Context dependent tokenizer
- - Part-of-speech tagger
- - Phrasal chunker
- - Dictionary lookup annotator
- - Context annotator
- - Negation detector
+
+ - Sentence boundary detection (OpenNLP technology)
+ - Tokenization (rule-based)
+ - Morphologic normalization (NLMâs LVG)
+ - POS tagging (OpenNLP technology)
+ - Shallow parsing (OpenNLP technology)
+ - Named Entity Recognition
+ - Dictionary mapping (lookup algorithm)
+ - types: diseases/disorders, signs/symptoms, anatomical sites, procedures, medications
+ - Assertion module
- Dependency parser
- - Module for the identification of patient smoking status
- - Drug mention annotator
+ - Constituency parser
+ - Semantic Role Labeler
+ - Coreference resolver
+ - Drug Profile module
+ - Smoking status classifier
+
Modified: incubator/ctakes/site/trunk/content/ctakes/mailing-lists.mdtext
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/content/ctakes/mailing-lists.mdtext?rev=1362140&r1=1362139&r2=1362140&view=diff
==============================================================================
--- incubator/ctakes/site/trunk/content/ctakes/mailing-lists.mdtext (original)
+++ incubator/ctakes/site/trunk/content/ctakes/mailing-lists.mdtext Mon Jul 16 17:13:37 2012
@@ -40,7 +40,7 @@ This is where the community receives aut
cTAKES code and documentation. This is a moderate traffic list, with an average of 10 posts/day.
- Subscribe: [ctakes-commits-subscribe@incubator.apache.org][7]
- - Unsubscribe: [odf-commmits-unsubscribe@incubator.apache.org][8]
+ - Unsubscribe: [ctakes-commmits-unsubscribe@incubator.apache.org][8]
- Archives
- [Markmail][9]
- [Apache][10]
@@ -64,7 +64,7 @@ This is where the users ask questions, s
[6]: http://mail-archives.apache.org/mod_mbox/incubator-ctakes-dev/
[7]: mailto:ctakes-commits-subscribe@incubator.apache.org
- [8]: mailto:odf-commmits-unsubscribe@incubator.apache.org
+ [8]: mailto:ctakes-commmits-unsubscribe@incubator.apache.org
[9]: http://markmail.org/search/+list:org.apache.incubator.ctakes-commits
[10]: http://mail-archives.apache.org/mod_mbox/incubator-ctakes-commits/
[11]: mailto:ctakes-users-subscribe@incubator.apache.org
Modified: incubator/ctakes/site/trunk/content/ctakes/people.mdtext
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/content/ctakes/people.mdtext?rev=1362140&r1=1362139&r2=1362140&view=diff
==============================================================================
--- incubator/ctakes/site/trunk/content/ctakes/people.mdtext (original)
+++ incubator/ctakes/site/trunk/content/ctakes/people.mdtext Mon Jul 16 17:13:37 2012
@@ -24,5 +24,8 @@ to look at all contributors to our issue
|^----------|----------------------------------------------------|--------------------------|------------------|
| chenpei | Pei Chen | Boston, MA, USA | Java, NLP, ML |
| james-masanz | James Masanz | MN, USA | |
-| N/A | Guergana K. Savova | Boston, MA, USA | |
-| N/A | Sean Finan | Boston, MA, USA | |
+| tba | Guergana K. Savova | Boston, MA, USA | |
+| tba | Sean Finan | Boston, MA, USA | |
+| gsingers | Grant Ingersoll | | Apache cTAKES Mentor |
+| mattmann | Chris Mattmann | | Apache cTAKES Mentor |
+| joern | Jörn Kottmann | | Apache cTAKES Mentor |
Modified: incubator/ctakes/site/trunk/templates/skeleton.html
URL: http://svn.apache.org/viewvc/incubator/ctakes/site/trunk/templates/skeleton.html?rev=1362140&r1=1362139&r2=1362140&view=diff
==============================================================================
--- incubator/ctakes/site/trunk/templates/skeleton.html (original)
+++ incubator/ctakes/site/trunk/templates/skeleton.html Mon Jul 16 17:13:37 2012
@@ -1,58 +1,58 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
-<html>
-<head>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one or more
- contributor license agreements. See the NOTICE file distributed with
- this work for additional information regarding copyright ownership.
- The ASF licenses this file to You under the Apache License, Version 2.0
- (the "License"); you may not use this file except in compliance with
- the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE- 2.0
-
- Unless required by applicable law or agreed to in writing, software
- distributed under the License is distributed on an "AS IS" BASIS,
- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- See the License for the specific language governing permissions and
- limitations under the License.
--->
-<link rel="stylesheet" type="text/css" media="screen" href="http://www.apache.org/css/style.css">
-<link rel="stylesheet" type="text/css" media="screen" href="http://www.apache.org/css/code.css">
-
-<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
-{% if header %}
-{% autoescape off %}{{ header }}{% endautoescape %}{% else %}
-<title>{% block title %}{{ headers.title }}{% endblock %}</title>
-<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-{% endif %}
-</head>
-
-<body>
- <div id="header" class="grid_8">
- <img src="http://www.apache.org/images/feather-small.gif" alt="The Apache Software Foundation">
- <h1>The Apache Software Foundation</h1>
- </div>
-
- <div id="banner">
- <div id="bannerright"><a alt="Apache Incubator" href="http://incubator.apache.org">
- <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png"/></a></div>
- </div>
- <div id="clear"></div>
-
- <div id="sidenav">
- {% filter markdown %}{% include "sidenav.mdtext" %}{% endfilter %}
- </div>
- <div id="contenta">
- {% block title %}{% if headers.title %}<h1 class="title">{{ headers.title }}</h1>{% endif %}{% endblock %}
- {% block content %}{{ content|markdown }}{% endblock %}
- </div>
-
- <div id="copyrighta" class="container_16">
- <p>Copyright © 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
- </div>
-
-</body>
-</html>
-
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<html>
+<head>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one or more
+ contributor license agreements. See the NOTICE file distributed with
+ this work for additional information regarding copyright ownership.
+ The ASF licenses this file to You under the Apache License, Version 2.0
+ (the "License"); you may not use this file except in compliance with
+ the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE- 2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+-->
+
+<link href="/ctakes/css/ctakes.css" rel="stylesheet" type="text/css">
+{% if header %}
+{% autoescape off %}{{ header }}{% endautoescape %}{% else %}
+<title>{% block title %}{{ headers.title }}{% endblock %}</title>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+{% endif %}
+</head>
+
+<body>
+ <div id="banner">
+ <div id="bannerleft">
+ <img src="http://www.apache.org/images/feather-small.gif" alt="The Apache Software Foundation">
+ <h3>The Apache Software Foundation</h3>
+ </div>
+ <div id="bannerright"><a alt="Apache Incubator" href="http://incubator.apache.org">
+ <img id="asf-logo" alt="Apache Incubator" src="http://incubator.apache.org/images/egg-logo.png"/></a></div>
+ </div>
+ <div id="clear"></div>
+
+
+ <div id="sidenav">
+ {% filter markdown %}{% include "sidenav.mdtext" %}{% endfilter %}
+ </div>
+ <div id="contenta">
+ {% block title %}{% if headers.title %}<h1 class="title">{{ headers.title }}</h1>{% endif %}{% endblock %}
+ {% block content %}{{ content|markdown }}{% endblock %}
+ </div>
+
+ <div id="footera">
+ <div id="copyrighta">
+ <p>Copyright © 2011 The Apache Software Foundation, Licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.<br/>Apache and the Apache feather logo are trademarks of The Apache Software Foundation.</p>
+ </div>
+ </div>
+
+</body>
+</html>
+