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Posted to issues@spark.apache.org by "Apache Spark (Jira)" <ji...@apache.org> on 2022/03/30 09:48:00 UTC
[jira] [Assigned] (SPARK-38652) K8S IT Test DepsTestsSuite blocks with PathIOException in hadoop-aws-3.3.2
[ https://issues.apache.org/jira/browse/SPARK-38652?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Apache Spark reassigned SPARK-38652:
------------------------------------
Assignee: Apache Spark
> K8S IT Test DepsTestsSuite blocks with PathIOException in hadoop-aws-3.3.2
> --------------------------------------------------------------------------
>
> Key: SPARK-38652
> URL: https://issues.apache.org/jira/browse/SPARK-38652
> Project: Spark
> Issue Type: Bug
> Components: Kubernetes
> Affects Versions: 3.3.0
> Reporter: qian
> Assignee: Apache Spark
> Priority: Blocker
>
> DepsTestsSuite in k8s IT test is blocked with PathIOException in hadoop-aws-3.3.2. Exception Message is as follow
> {code:java}
> Exception in thread "main" org.apache.spark.SparkException: Uploading file /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar failed...
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:332)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.$anonfun$uploadAndTransformFileUris$1(KubernetesUtils.scala:277)
> at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:286)
> at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
> at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
> at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
> at scala.collection.TraversableLike.map(TraversableLike.scala:286)
> at scala.collection.TraversableLike.map$(TraversableLike.scala:279)
> at scala.collection.AbstractTraversable.map(Traversable.scala:108)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadAndTransformFileUris(KubernetesUtils.scala:275)
> at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.$anonfun$getAdditionalPodSystemProperties$1(BasicDriverFeatureStep.scala:187)
> at scala.collection.immutable.List.foreach(List.scala:431)
> at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.getAdditionalPodSystemProperties(BasicDriverFeatureStep.scala:178)
> at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.$anonfun$buildFromFeatures$5(KubernetesDriverBuilder.scala:86) at scala.collection.LinearSeqOptimized.foldLeft(LinearSeqOptimized.scala:126)
> at scala.collection.LinearSeqOptimized.foldLeft$(LinearSeqOptimized.scala:122)
> at scala.collection.immutable.List.foldLeft(List.scala:91)
> at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.buildFromFeatures(KubernetesDriverBuilder.scala:84)
> at org.apache.spark.deploy.k8s.submit.Client.run(KubernetesClientApplication.scala:104)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5(KubernetesClientApplication.scala:248)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5$adapted(KubernetesClientApplication.scala:242)
> at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2738)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.run(KubernetesClientApplication.scala:242)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.start(KubernetesClientApplication.scala:214)
> at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958)
> at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180)
> at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203)
> at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90)
> at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046)
> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055)
> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)Caused by: org.apache.spark.SparkException: Error uploading file spark-examples_2.12-3.4.0-SNAPSHOT.jar
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:355)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:328)
> ... 30 more
> Caused by: org.apache.hadoop.fs.PathIOException: `Cannot get relative path for URI:file:///Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar': Input/output error
> at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.getFinalPath(CopyFromLocalOperation.java:365)
> at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.uploadSourceFromFS(CopyFromLocalOperation.java:226)
> at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.execute(CopyFromLocalOperation.java:170)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$copyFromLocalFile$25(S3AFileSystem.java:3920)
> at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.lambda$trackDurationOfOperation$5(IOStatisticsBinding.java:499) at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.trackDuration(IOStatisticsBinding.java:444)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2337)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2356)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.copyFromLocalFile(S3AFileSystem.java:3913)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:352)
> ... 31 more {code}
> For more information please refer to HADOOP-18173.
>
> But, DepsTestsSuite with hadoop-aws-3.3.1 works normally.
> {noformat}
> hengzhen.sq@b-q922md6r-0237 ~/Desktop$ /Users/hengzhen.sq/IdeaProjects/spark/bin/spark-submit --deploy-mode cluster --class org.apache.spark.examples.SparkRemoteFileTest --master k8s://https://192.168.64.86:8443/ --conf spark.hadoop.fs.s3a.impl=org.apache.hadoop.fs.s3a.S3AFileSystem --conf spark.testing=false --conf spark.hadoop.fs.s3a.access.key=minio --conf spark.kubernetes.driver.label.spark-app-locator=a8937b5fdf6a444a806ee1c3ecac37fc --conf spark.kubernetes.file.upload.path=s3a://spark --conf spark.authenticate=true --conf spark.executor.instances=1 --conf spark.kubernetes.submission.waitAppCompletion=false --conf spark.kubernetes.executor.label.spark-app-locator=a8937b5fdf6a444a806ee1c3ecac37fc --conf spark.kubernetes.namespace=spark-job --conf spark.kubernetes.authenticate.driver.serviceAccountName=spark --conf spark.hadoop.fs.s3a.secret.key=miniostorage --conf spark.executor.extraJavaOptions=-Dlog4j2.debug --conf spark.hadoop.fs.s3a.endpoint=192.168.64.86:32681 --conf spark.app.name=spark-test-app --conf spark.files=/tmp/tmp7013228683780235449.txt --conf spark.ui.enabled=true --conf spark.driver.extraJavaOptions=-Dlog4j2.debug --conf spark.kubernetes.container.image=registry.cn-hangzhou.aliyuncs.com/smart-spark/spark:test --conf spark.executor.cores=1 --conf spark.jars.packages=org.apache.hadoop:hadoop-aws:3.3.1 --conf spark.hadoop.fs.s3a.connection.ssl.enabled=false /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar tmp7013228683780235449.txt
> 22/03/25 10:24:10 WARN Utils: Your hostname, B-Q922MD6R-0237.local resolves to a loopback address: 127.0.0.1; using 30.25.86.17 instead (on interface en0)
> 22/03/25 10:24:10 WARN Utils: Set SPARK_LOCAL_IP if you need to bind to another address
> :: loading settings :: url = jar:file:/Users/hengzhen.sq/IdeaProjects/spark/assembly/target/scala-2.12/jars/ivy-2.5.0.jar!/org/apache/ivy/core/settings/ivysettings.xml
> Ivy Default Cache set to: /Users/hengzhen.sq/.ivy2/cache
> The jars for the packages stored in: /Users/hengzhen.sq/.ivy2/jars
> org.apache.hadoop#hadoop-aws added as a dependency
> :: resolving dependencies :: org.apache.spark#spark-submit-parent-8220baa6-0490-4484-9779-945d4cf69df4;1.0
> confs: [default]
> found org.apache.hadoop#hadoop-aws;3.3.1 in central
> found com.amazonaws#aws-java-sdk-bundle;1.11.901 in central
> found org.wildfly.openssl#wildfly-openssl;1.0.7.Final in central
> :: resolution report :: resolve 224ms :: artifacts dl 6ms
> :: modules in use:
> com.amazonaws#aws-java-sdk-bundle;1.11.901 from central in [default]
> org.apache.hadoop#hadoop-aws;3.3.1 from central in [default]
> org.wildfly.openssl#wildfly-openssl;1.0.7.Final from central in [default]
> ---------------------------------------------------------------------
> | | modules || artifacts |
> | conf | number| search|dwnlded|evicted|| number|dwnlded|
> ---------------------------------------------------------------------
> | default | 3 | 0 | 0 | 0 || 3 | 0 |
> ---------------------------------------------------------------------
> :: retrieving :: org.apache.spark#spark-submit-parent-8220baa6-0490-4484-9779-945d4cf69df4
> confs: [default]
> 0 artifacts copied, 3 already retrieved (0kB/6ms)
> 22/03/25 10:24:11 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
> 22/03/25 10:24:11 INFO SparkKubernetesClientFactory: Auto-configuring K8S client using current context from users K8S config file
> 22/03/25 10:24:12 INFO KerberosConfDriverFeatureStep: You have not specified a krb5.conf file locally or via a ConfigMap. Make sure that you have the krb5.conf locally on the driver image.
> 22/03/25 10:24:12 WARN MetricsConfig: Cannot locate configuration: tried hadoop-metrics2-s3a-file-system.properties,hadoop-metrics2.properties
> 22/03/25 10:24:12 INFO MetricsSystemImpl: Scheduled Metric snapshot period at 10 second(s).
> 22/03/25 10:24:12 INFO MetricsSystemImpl: s3a-file-system metrics system started
> 22/03/25 10:24:13 INFO KubernetesUtils: Uploading file: /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to dest: s3a://spark/spark-upload-f49ee7fc-182d-499a-b073-40b298c55e8b/spark-examples_2.12-3.4.0-SNAPSHOT.jar...
> 22/03/25 10:24:13 INFO KubernetesUtils: Uploading file: /private/tmp/tmp7013228683780235449.txt to dest: s3a://spark/spark-upload-906c6d35-6aa7-4ee8-8c37-434f547c6087/tmp7013228683780235449.txt...
> 22/03/25 10:24:14 INFO ShutdownHookManager: Shutdown hook called
> 22/03/25 10:24:14 INFO ShutdownHookManager: Deleting directory /private/var/folders/3t/v_td68551s78mq4c1cpk86gc0000gn/T/spark-e89a395e-c3b4-4619-8c9b-e60310af6503
> 22/03/25 10:24:14 INFO MetricsSystemImpl: Stopping s3a-file-system metrics system...
> 22/03/25 10:24:14 INFO MetricsSystemImpl: s3a-file-system metrics system stopped.
> 22/03/25 10:24:14 INFO MetricsSystemImpl: s3a-file-system metrics system shutdown complete.{noformat}
> CopyFromLocalFile action in hadoop-aws is different between 3.3.1 and 3.3.2, because 3.3.2 introuduces CopyFromLocalFileOperation.
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