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Posted to issues@arrow.apache.org by "Lance Dacey (Jira)" <ji...@apache.org> on 2021/01/14 10:43:00 UTC

[jira] [Created] (ARROW-11250) [Python] Inconsistent behavior calling ds.dataset()

Lance Dacey created ARROW-11250:
-----------------------------------

             Summary: [Python] Inconsistent behavior calling ds.dataset()
                 Key: ARROW-11250
                 URL: https://issues.apache.org/jira/browse/ARROW-11250
             Project: Apache Arrow
          Issue Type: Bug
          Components: Python
    Affects Versions: 2.0.0
         Environment: Ubuntu 18.04

adal                      1.2.5              pyh9f0ad1d_0    conda-forge
adlfs                     0.5.9              pyhd8ed1ab_0    conda-forge
apache-airflow            1.10.14                  pypi_0    pypi
azure-common              1.1.24                     py_0    conda-forge
azure-core                1.9.0              pyhd3deb0d_0    conda-forge
azure-datalake-store      0.0.51             pyh9f0ad1d_0    conda-forge
azure-identity            1.5.0              pyhd8ed1ab_0    conda-forge
azure-nspkg               3.0.2                      py_0    conda-forge
azure-storage-blob        12.6.0             pyhd3deb0d_0    conda-forge
azure-storage-common      2.1.0            py37hc8dfbb8_3    conda-forge
fsspec                    0.8.5              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
pandas                    1.2.0            py37ha9443f7_0
pyarrow                   2.0.0           py37h4935f41_6_cpu    conda-forge
            Reporter: Lance Dacey
             Fix For: 3.0.0


In a Jupyter notebook, I have noticed that sometimes I am not able to read a dataset which certainly exists on Azure Blob.

 
{code:java}
fs = fsspec.filesystem(protocol="abfs", account_name, account_key)
{code}
 
One example of this is reading a dataset in one cell:

 
{code:java}
ds.dataset("dev/test-split", partitioning="hive", filesystem=fs){code}
 

Then in another cell I try to read the same dataset:

 
{code:java}
ds.dataset("dev/test-split", partitioning="hive", filesystem=fs)


---------------------------------------------------------------------------
FileNotFoundError                         Traceback (most recent call last)
<ipython-input-514-bf63585a0c1b> in <module>
----> 1 ds.dataset("dev/test-split", partitioning="hive", filesystem=fs)

/opt/conda/lib/python3.8/site-packages/pyarrow/dataset.py in dataset(source, schema, format, filesystem, partitioning, partition_base_dir, exclude_invalid_files, ignore_prefixes)
    669     # TODO(kszucs): support InMemoryDataset for a table input
    670     if _is_path_like(source):
--> 671         return _filesystem_dataset(source, **kwargs)
    672     elif isinstance(source, (tuple, list)):
    673         if all(_is_path_like(elem) for elem in source):

/opt/conda/lib/python3.8/site-packages/pyarrow/dataset.py in _filesystem_dataset(source, schema, filesystem, partitioning, format, partition_base_dir, exclude_invalid_files, selector_ignore_prefixes)
    426         fs, paths_or_selector = _ensure_multiple_sources(source, filesystem)
    427     else:
--> 428         fs, paths_or_selector = _ensure_single_source(source, filesystem)
    429 
    430     options = FileSystemFactoryOptions(

/opt/conda/lib/python3.8/site-packages/pyarrow/dataset.py in _ensure_single_source(path, filesystem)
    402         paths_or_selector = [path]
    403     else:
--> 404         raise FileNotFoundError(path)
    405 
    406     return filesystem, paths_or_selector

FileNotFoundError: dev/test-split
{code}
 

If I reset the kernel, it works again. It also works if I change the path slightly, like adding a "/" at the end (so basically it just not work if I read the same dataset twice):

 
{code:java}
ds.dataset("dev/test-split/", partitioning="hive", filesystem=fs)
{code}
 

 

The other strange behavior I have noticed that that if I read a dataset inside of my Jupyter notebook,

 
{code:java}
%%time
dataset = ds.dataset("dev/test-split", partitioning=ds.partitioning(pa.schema([("date", pa.date32())]), flavor="hive"), 
filesystem=fs,
exclude_invalid_files=False)

CPU times: user 1.98 s, sys: 0 ns, total: 1.98 s Wall time: 2.58 s{code}
 

Now, on the exact same server when I try to run the same code against the same dataset in Airflow it takes over 3 minutes (comparing the timestamps in my logs between right before I read the dataset, and immediately after the dataset is available to filter):
{code:java}
[2021-01-14 03:52:04,011] INFO - Reading dev/test-split
[2021-01-14 03:55:17,360] INFO - Processing dataset in batches
{code}
This is probably not a pyarrow issue, but what are some potential causes that I can look into? I have one example where it is 9 seconds to read the dataset in Jupyter, but then 11 *minutes* in Airflow. I don't know what to really investigate - as I mentioned, the Jupyter notebook and Airflow are on the same server and both are deployed using Docker. Airflow is using the CeleryExecutor.

 



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