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Posted to commits@stanbol.apache.org by "Reto Bachmann-Gmür (JIRA)" <ji...@apache.org> on 2013/05/16 22:31:16 UTC
[jira] [Commented] (STANBOL-1073) exception parsing turtle, nt and
n3
[ https://issues.apache.org/jira/browse/STANBOL-1073?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13659942#comment-13659942 ]
Reto Bachmann-Gmür commented on STANBOL-1073:
---------------------------------------------
Finding the following in the log:
16.05.2013 21:43:52.153 *WARN* [122668085@qtp-1201848792-4] org.apache.felix.http.jetty Error for /entityhub/entity (java.lang.ExceptionInInitializerError) java.lang.ExceptionInInitializerError
at org.openjena.riot.system.JenaReaderRIOT.readImpl(JenaReaderRIOT.java:121)
at org.openjena.riot.system.JenaReaderRIOT.read(JenaReaderRIOT.java:79)
at com.hp.hpl.jena.rdf.model.impl.ModelCom.read(ModelCom.java:226)
at org.apache.clerezza.rdf.jena.parser.JenaParserProvider.parse(JenaParserProvider.java:68)
at org.apache.clerezza.rdf.core.serializedform.Parser.parse(Parser.java:191)
at org.apache.clerezza.rdf.core.serializedform.Parser.parse(Parser.java:144)
at org.apache.stanbol.entityhub.jersey.parsers.RepresentationReader.parseFromContent(RepresentationReader.java:246)
at org.apache.stanbol.entityhub.jersey.parsers.RepresentationReader.readFrom(RepresentationReader.java:228)
at org.apache.stanbol.entityhub.jersey.parsers.RepresentationReader.readFrom(RepresentationReader.java:1)
at com.sun.jersey.spi.container.ContainerRequest.getEntity(ContainerRequest.java:488)
at com.sun.jersey.server.impl.model.method.dispatch.EntityParamDispatchProvider$EntityInjectable.getValue(EntityParamDispatchProvider.java:123)
at com.sun.jersey.server.impl.inject.InjectableValuesProvider.getInjectableValues(InjectableValuesProvider.java:46)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$EntityParamInInvoker.getParams(AbstractResourceMethodDispatchProvider.java:153)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:203)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1480)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1411)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1360)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1350)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:538)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:716)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
at org.apache.felix.http.base.internal.handler.ServletHandler.doHandle(ServletHandler.java:96)
at org.apache.felix.http.base.internal.handler.ServletHandler.handle(ServletHandler.java:79)
at org.apache.felix.http.base.internal.dispatch.ServletPipeline.handle(ServletPipeline.java:42)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:49)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.stanbol.commons.httpqueryheaders.impl.QueryHeadersFilter.doFilter(QueryHeadersFilter.java:75)
at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:88)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:76)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:78)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilterHttp(ResourceServingFilter.java:148)
at org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilter(ResourceServingFilter.java:91)
at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:88)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:76)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.stanbol.commons.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:163)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAsPrivileged(Subject.java:536)
at org.apache.stanbol.commons.security.auth.AuthenticatingFilter.doFilter(AuthenticatingFilter.java:159)
at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:88)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:76)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.felix.http.base.internal.dispatch.FilterPipeline.dispatch(FilterPipeline.java:48)
at org.apache.felix.http.base.internal.dispatch.Dispatcher.dispatch(Dispatcher.java:39)
at org.apache.felix.http.base.internal.DispatcherServlet.service(DispatcherServlet.java:67)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
at org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511)
at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:390)
at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:765)
at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
at org.mortbay.jetty.Server.handle(Server.java:326)
at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
at org.mortbay.jetty.HttpConnection$RequestHandler.content(HttpConnection.java:943)
at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:756)
at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:218)
at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
at org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:410)
at org.mortbay.thread.QueuedThreadPool$PoolThread.run(QueuedThreadPool.java:582)
Caused by: java.security.AccessControlException: access denied ("java.io.FilePermission" "C:\Users\Reto\projects\apache\launchers\full\target\." "read")
at java.security.AccessControlContext.checkPermission(AccessControlContext.java:366)
at java.security.AccessController.checkPermission(AccessController.java:560)
at java.lang.SecurityManager.checkPermission(SecurityManager.java:549)
at java.lang.SecurityManager.checkRead(SecurityManager.java:888)
at java.io.File.isDirectory(File.java:797)
at java.io.File.toURI(File.java:700)
at com.hp.hpl.jena.util.FileUtils.toURL(FileUtils.java:203)
at org.openjena.riot.system.IRIResolver.<clinit>(IRIResolver.java:85)
... 72 more
16.05.2013 21:43:52.156 *WARN* [122668085@qtp-1201848792-4] org.apache.felix.http.jetty Nested in java.lang.ExceptionInInitializerError: (java.security.AccessControlException: access denied ("java.io.FilePermission" "C:\Users\Reto\projects\apache\launchers\full\target\." "read")) java.security.AccessControlException: access denied ("java.io.FilePermission" "C:\Users\Reto\projects\apache\launchers\full\target\." "read")
at java.security.AccessControlContext.checkPermission(AccessControlContext.java:366)
at java.security.AccessController.checkPermission(AccessController.java:560)
at java.lang.SecurityManager.checkPermission(SecurityManager.java:549)
at java.lang.SecurityManager.checkRead(SecurityManager.java:888)
at java.io.File.isDirectory(File.java:797)
at java.io.File.toURI(File.java:700)
at com.hp.hpl.jena.util.FileUtils.toURL(FileUtils.java:203)
at org.openjena.riot.system.IRIResolver.<clinit>(IRIResolver.java:85)
at org.openjena.riot.system.JenaReaderRIOT.readImpl(JenaReaderRIOT.java:121)
at org.openjena.riot.system.JenaReaderRIOT.read(JenaReaderRIOT.java:79)
at com.hp.hpl.jena.rdf.model.impl.ModelCom.read(ModelCom.java:226)
at org.apache.clerezza.rdf.jena.parser.JenaParserProvider.parse(JenaParserProvider.java:68)
at org.apache.clerezza.rdf.core.serializedform.Parser.parse(Parser.java:191)
at org.apache.clerezza.rdf.core.serializedform.Parser.parse(Parser.java:144)
at org.apache.stanbol.entityhub.jersey.parsers.RepresentationReader.parseFromContent(RepresentationReader.java:246)
at org.apache.stanbol.entityhub.jersey.parsers.RepresentationReader.readFrom(RepresentationReader.java:228)
at org.apache.stanbol.entityhub.jersey.parsers.RepresentationReader.readFrom(RepresentationReader.java:1)
at com.sun.jersey.spi.container.ContainerRequest.getEntity(ContainerRequest.java:488)
at com.sun.jersey.server.impl.model.method.dispatch.EntityParamDispatchProvider$EntityInjectable.getValue(EntityParamDispatchProvider.java:123)
at com.sun.jersey.server.impl.inject.InjectableValuesProvider.getInjectableValues(InjectableValuesProvider.java:46)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$EntityParamInInvoker.getParams(AbstractResourceMethodDispatchProvider.java:153)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:203)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1480)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1411)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1360)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1350)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:538)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:716)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
at org.apache.felix.http.base.internal.handler.ServletHandler.doHandle(ServletHandler.java:96)
at org.apache.felix.http.base.internal.handler.ServletHandler.handle(ServletHandler.java:79)
at org.apache.felix.http.base.internal.dispatch.ServletPipeline.handle(ServletPipeline.java:42)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:49)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.stanbol.commons.httpqueryheaders.impl.QueryHeadersFilter.doFilter(QueryHeadersFilter.java:75)
at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:88)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:76)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:78)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilterHttp(ResourceServingFilter.java:148)
at org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilter(ResourceServingFilter.java:91)
at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:88)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:76)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.stanbol.commons.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:163)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAsPrivileged(Subject.java:536)
at org.apache.stanbol.commons.security.auth.AuthenticatingFilter.doFilter(AuthenticatingFilter.java:159)
at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:88)
at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:76)
at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:47)
at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:33)
at org.apache.felix.http.base.internal.dispatch.FilterPipeline.dispatch(FilterPipeline.java:48)
at org.apache.felix.http.base.internal.dispatch.Dispatcher.dispatch(Dispatcher.java:39)
at org.apache.felix.http.base.internal.DispatcherServlet.service(DispatcherServlet.java:67)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
at org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511)
at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:390)
at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:765)
at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
at org.mortbay.jetty.Server.handle(Server.java:326)
at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
at org.mortbay.jetty.HttpConnection$RequestHandler.content(HttpConnection.java:943)
at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:756)
at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:218)
at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
at org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:410)
It seems that some special permission is required during the first parsing attempt. If the first parsing attempt is done without that permission the all subsequent parsing requests will fail too.
> exception parsing turtle, nt and n3
> -----------------------------------
>
> Key: STANBOL-1073
> URL: https://issues.apache.org/jira/browse/STANBOL-1073
> Project: Stanbol
> Issue Type: Bug
> Reporter: Reto Bachmann-Gmür
>
> Parsing these formats fail with the following exception:
> java.lang.NoClassDefFoundError: Could not initialize class org.openjena.riot.system.IRIResolver
> at org.openjena.riot.system.JenaReaderRIOT.readImpl(JenaReaderRIOT.java:121)
> at org.openjena.riot.system.JenaReaderRIOT.read(JenaReaderRIOT.java:79)
> at com.hp.hpl.jena.rdf.model.impl.ModelCom.read(ModelCom.java:226)
> at org.apache.clerezza.rdf.jena.parser.JenaParserProvider.parse(JenaParserProvider.java:68)
> To reproduce the problem
> zz>import org.apache.clerezza.rdf.core.serializedform._
> zz>val p = $[Parser]
> zz>import java.io._
> zz>val in = new ByteArrayInputStream("<http://example.org/me> <http://xmlns.com/foaf/0.1/name> \"Jane Doe\" .".getBytes)
> zz>p.parse(in, "text/turtle")
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