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Posted to commits@airavata.apache.org by sa...@apache.org on 2014/04/14 20:30:52 UTC
[50/90] [abbrv] [partial] AIRAVATA-1124
http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
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diff --git a/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml b/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
deleted file mode 100644
index 3f16978..0000000
--- a/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
+++ /dev/null
@@ -1,165 +0,0 @@
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
- the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
- obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
- in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
- ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
- the License. -->
-
-<!DOCTYPE assembly [
- <!ELEMENT assembly (id|includeBaseDirectory|baseDirectory|formats|fileSets|dependencySets)*>
- <!ELEMENT id (#PCDATA)>
- <!ELEMENT includeBaseDirectory (#PCDATA)>
- <!ELEMENT baseDirectory (#PCDATA)>
- <!ELEMENT formats (format)*>
- <!ELEMENT format (#PCDATA)>
- <!ELEMENT fileSets (fileSet)*>
- <!ELEMENT fileSet (directory|outputDirectory|includes)*>
- <!ELEMENT directory (#PCDATA)>
- <!ELEMENT outputDirectory (#PCDATA)>
- <!ELEMENT includes (include)*>
- <!ELEMENT include (#PCDATA)>
- <!ELEMENT dependencySets (dependencySet)*>
- <!ELEMENT dependencySet (outputDirectory|includes)*>
- ]>
-<assembly>
- <id>bin</id>
- <includeBaseDirectory>true</includeBaseDirectory>
- <baseDirectory>${archieve.name}-${version}</baseDirectory>
- <formats>
- <format>tar.gz</format>
- <format>zip</format>
- </formats>
- <fileSets>
- <!-- ********************** copy release notes files ********************** -->
- <fileSet>
- <directory>../../../</directory>
- <outputDirectory>.</outputDirectory>
- <includes>
- <include>RELEASE_NOTES</include>
- </includes>
- </fileSet>
- <!-- ********************** copy licenses, readme etc. ********************** -->
- <fileSet>
- <directory>src/main/resources/</directory>
- <outputDirectory>.</outputDirectory>
- <includes>
- <include>LICENSE</include>
- <include>NOTICE</include>
- <include>README</include>
- <include>INSTALL</include>
- </includes>
- </fileSet>
- <fileSet>
- <directory>../../../xbaya-gui/src/test/resources/</directory>
- <outputDirectory>samples/workflows</outputDirectory>
- <includes>
- <include>*.xwf</include>
- </includes>
- </fileSet>
- <fileSet>
- <directory>../../../samples</directory>
- <outputDirectory>samples</outputDirectory>
- <includes>
- <include>*.sh</include>
- </includes>
- </fileSet>
- <fileSet>
- <directory>${project.build.directory}/</directory>
- <outputDirectory>bin</outputDirectory>
- <includes>
- <include>*.properties</include>
- </includes>
- </fileSet>
- <fileSet>
- <directory>src/main/resources/bin</directory>
- <outputDirectory>bin</outputDirectory>
- <includes>
- <include>**/*</include>
- </includes>
- </fileSet>
- </fileSets>
-
- <dependencySets>
- <dependencySet>
- <outputDirectory>lib</outputDirectory>
- <outputFileNameMapping>${artifact.artifactId}.${artifact.extension}</outputFileNameMapping>
- <includes>
- <include>org.apache.derby:derby:jar</include>
- <include>org.apache.derby:derbytools:jar</include>
- <include>org.apache.derby:derbynet:jar</include>
- <include>org.apache.derby:derbyclient:jar</include>
- </includes>
- </dependencySet>
- <dependencySet>
- <outputDirectory>lib</outputDirectory>
- <includes>
- <include>javax.jcr:jcr:jar</include>
- <include>commons-collections:commons-collections</include>
- <include>commons-configuration:commons-configuration</include>
- <include>commons-lang:commons-lang</include>
- <include>org.ogce:xpp3:jar</include>
- <include>org.ogce:xpp5:jar</include>
- <include>org.ogce:xsul:jar</include>
- <include>org.ogce:xsul5:jar</include>
- <include>org.ogce:gpel-client:jar</include>
- <include>org.ogce:atomixmiser:jar</include>
- <include>org.ogce:yfilter:jar</include>
- <include>org.python:jython:jar</include>
- <include>org.apache.xmlbeans:xmlbeans</include>
- <include>com.amazonaws:aws-java-sdk</include>
- <include>net.java.dev.jets3t:jets3t</include>
- <include>org.apache.airavata:airavata-registry-api</include>
- <include>org.apache.airavata:airavata-workflow-execution-context</include>
- <include>org.apache.airavata:airavata-workflow-tracking</include>
- <include>org.apache.airavata:airavata-gfac-core</include>
- <include>org.apache.airavata:airavata-gfac-ec2</include>
- <include>org.apache.airavata:airavata-messenger-client</include>
- <include>org.apache.airavata:airavata-messenger-client</include>
- <include>org.apache.airavata:airavata-messenger-commons</include>
- <include>org.apache.airavata:airavata-gfac-schema-utils</include>
- <include>org.apache.airavata:airavata-common-utils</include>
- <include>org.apache.airavata:airavata-workflow-model-core:jar</include>
- <include>org.apache.airavata:airavata-workflow-model-component:jar</include>
- <include>org.apache.airavata:airavata-message-monitor:jar</include>
- <include>org.apache.airavata:airavata-client-api:jar</include>
- <include>org.apache.airavata:airavata-jpa-registry:jar</include>
- <include>org.apache.airavata:airavata-interpreter-service-client:jar</include>
- <include>org.apache.airavata:airavata-interpreter-service:jar</include>
- <include>org.apache.airavata:airavata-interpreter-service-handler:jar</include>
- <include>org.apache.airavata:airavata-xbaya-gui</include>
- <include>org.apache.openjpa:openjpa-all:jar</include>
- <include>com.sun.jersey:jersey-client:jar</include>
- <include>com.sun.jersey:jersey-core:jar</include>
- <include>com.sun.jersey:jersey-json</include>
- <include>org.codehaus.jackson:jackson-jaxrs</include>
- <include>org.codehaus.jackson:jackson-core-asl</include>
- <include>org.codehaus.jackson:jackson-mapper-asl</include>
- <include>org.codehaus.jackson:jackson-xc</include>
- <include>xerces:xercesImpl:jar:2.9.1</include>
- <include>de.fzj.unicore:jsdl-xmlbeans:jar:2.1.0</include>
- <include>commons-codec:commons-codec:jar</include>
- <include>wsdl4j:wsdl4j:jar</include>
- <include>org.apache.axis2:axis2-kernel:jar</include>
- <include>commons-httpclient:commons-httpclient:jar</include>
- <include>org.apache.ws.commons.axiom:axiom-api:jar</include>
- <include>org.apache.axis2:axis2:jar</include>
- <include>org.apache.ws.commons.schema:XmlSchema:jar</include>
- <include>org.apache.ws.commons.axiom:axiom-impl:jar</include>
- <include>org.apache.neethi:neethi:jar</include>
- <include>org.apache.axis2:axis2-transport-local:jar</include>
- <include>org.apache.axis2:axis2-transport-http:jar</include>
- <include>javax.mail:mail:jar</include>
- <include>org.apache.woden:woden-api:jar</include>
- <!--<include>org.apache.httpcomponents:httpcore:jar</include> -->
- <include>org.apache.axis2:axis2-adb:jar</include>
- <include>com.google.guava:guava</include>
- <include>org.apache.httpcomponents:httpcore:jar:4.3</include>
- <include>org.apache.httpcomponents:httpclient:jar:4.3</include>
- <!--<include>org.globusonline:transfer-api-client-java:jar:0.10.8</include>-->
- <include>org.bouncycastle:bcprov-jdk16:jar:1.45</include>
- <include>org.apache.thrift:libthrift:jar:0.9.1</include>
- </includes>
- </dependencySet>
- </dependencySets>
-</assembly>
http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/distribution/xbaya-gui/src/main/java/org/apache/airavata/distribution/xbaya/jnlp/Main.java
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diff --git a/modules/distribution/xbaya-gui/src/main/java/org/apache/airavata/distribution/xbaya/jnlp/Main.java b/modules/distribution/xbaya-gui/src/main/java/org/apache/airavata/distribution/xbaya/jnlp/Main.java
deleted file mode 100644
index b9998b7..0000000
--- a/modules/distribution/xbaya-gui/src/main/java/org/apache/airavata/distribution/xbaya/jnlp/Main.java
+++ /dev/null
@@ -1,156 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements. See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership. The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License. You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied. See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-
-package org.apache.airavata.distribution.xbaya.jnlp;
-
-import java.io.*;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * This class will go through lib directory and creates the jnlp configuration file.
- */
-public class Main {
-
- private static final String CONFIGURATION_ELEMENT = "DEPENDENT_JARS";
-
- public static void main(String[] args) {
-
- if (args.length != 2) {
- System.err
- .println("[ERROR] JNLP creator must be given with lib directory of Xbaya and JNLP template location.");
- System.exit(-1);
- }
-
- String libDirectory = args[0];
- String jnlpTemplateFile = args[1];
-
- System.out.println("[INFO] The lib directory is " + libDirectory);
- System.out.println("[INFO] The jnlp file is " + jnlpTemplateFile);
-
- File libDirectoryFile = new File(libDirectory);
-
- if (!libDirectoryFile.exists()) {
- System.err.println("[ERROR] Invalid lib directory given - " + libDirectory + ". Cannot add dependent jars");
- System.exit(-1);
- }
-
- File jnlpFile = new File(jnlpTemplateFile);
- if (!jnlpFile.canRead()) {
- System.err.println("[ERROR] Unable to read given jnlp file - " + jnlpTemplateFile + ".");
- System.exit(-1);
-
- }
-
- StringBuilder stringBuilder = new StringBuilder();
-
- // Read all dependencies
- for (File file : libDirectoryFile.listFiles(new JarFileFilter())) {
- String line = "<jar href=\"lib/" + file.getName() + "\"/>";
- stringBuilder.append(line);
- stringBuilder.append("\n");
- }
-
- // System.out.println(stringBuilder.toString());
- modifyConfigurations(jnlpFile, stringBuilder);
-
- }
-
- private static void modifyConfigurations(File jnlpFile, StringBuilder dependencies) {
-
- List<String> lines = new ArrayList<String>();
-
- // first, read the file and store the changes
- BufferedReader in = null;
- try {
- in = new BufferedReader(new FileReader(jnlpFile));
- } catch (FileNotFoundException e) {
- System.err.println("[ERROR] Error occurred while reading the file. " + e.getMessage());
- }
-
- String line = null;
- if (in != null) {
- try {
- line = in.readLine();
- } catch (IOException e) {
- System.err.println("[ERROR] Error occurred while reading the file. " + e.getMessage());
- try {
- in.close();
- } catch (IOException e1) {
- System.err.println("[ERROR] Error occurred while closing the file. " + e.getMessage());
- }
- }
- }
-
- try {
- while (line != null) {
-
- if (line.trim().startsWith(CONFIGURATION_ELEMENT)) {
- line = line.replaceAll(CONFIGURATION_ELEMENT, dependencies.toString());
- }
- lines.add(line);
- line = in.readLine();
-
- }
- } catch (IOException e) {
- System.err.println("[ERROR] Error occurred while reading the file. " + e.getMessage());
- } finally {
- try {
- if (in != null) {
- in.close();
- }
- } catch (IOException e) {
- System.err.println("[ERROR] Error occurred while closing the file. " + e.getMessage());
- }
- }
-
- // now, write the file again with the changes
- PrintWriter out = null;
- try {
- out = new PrintWriter(jnlpFile);
- for (String l : lines) {
- out.println(l);
- out.flush();
- }
- } catch (FileNotFoundException e) {
- System.err.println("[ERROR] Error occurred while writing back to the file. " + e.getMessage());
- } finally {
- if (out != null) {
- out.flush();
- out.close();
- }
- }
-
- }
-
- public static class JarFileFilter implements FilenameFilter {
- String ext;
-
- public JarFileFilter() {
- this.ext = ".jar";
- }
-
- public boolean accept(File dir, String name) {
- return name.endsWith(ext);
- }
- }
-
-}
http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/distribution/xbaya-gui/src/main/resources/INSTALL
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/INSTALL b/modules/distribution/xbaya-gui/src/main/resources/INSTALL
deleted file mode 100644
index 1d6d275..0000000
--- a/modules/distribution/xbaya-gui/src/main/resources/INSTALL
+++ /dev/null
@@ -1,44 +0,0 @@
-Installing Apache Airavata XBaya 0.11
--------------------------------------
-
-Prerequisites
--------------
-Java 1.5 or later
-Maven (tested on v 3.0.2)
-
-Build Apache Airavata XBaya from Source
----------------------------------
-* Unzip/untar the source file or check out from svn.
-* cd to project folder and type
- $ mvn clean install
- Note: in order to skip tests use the command
- $ mvn clean install -Dmaven.test.skip=true
-* The compressed binary distribution is created at <PROJECT DIR>/modules/distribution/xbaya-gui/target/apache-airavata-xbaya-gui-<airavata-version>-bin.zip
-
-Installing the Airavata XBaya
------------------------------
-No installation is necessary. Just extract the compressed distribution.
-Note: For customizing the default configurations of the Airavata Server please
- refer to Airavata web-site (http://airavata.apache.org/) and/or Airavata
- mailing lists (http://airavata.apache.org/community/mailing-lists.html)
-
-Starting Apache Airavata XBaya
-------------------------------
-* Navigate to <XBAYA_HOME>/bin
-* type for following command to start the Airavata XBaya
- MAC/Unix systems
- $ sh xbaya-gui.sh
- Windows
- > xbaya-gui.bat
- Note: Pass "-h" as parameters to see more options when starting the server
-
-Running Tests
--------------
-Once the binary is unzipped, instructions to run the tests should be followed from README
-
-Tutorials
-----------
-The airavata website has instructions for basic tutorials:
-* For basic understanding of how Airavata works - http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* Describing and executing applications using Airavata - http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-* Advanced tutorial to provide understanding of how to run sample workflows distributed with Airavata - http://airavata.apache.org/documentation/tutorials/advanced-workflow-samples.html