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Posted to jira@arrow.apache.org by "Anton Friberg (Jira)" <ji...@apache.org> on 2021/03/04 11:02:00 UTC
[jira] [Created] (ARROW-11857) Resource temporarily unavailable
when using the new Dataset API with Pandas
Anton Friberg created ARROW-11857:
-------------------------------------
Summary: Resource temporarily unavailable when using the new Dataset API with Pandas
Key: ARROW-11857
URL: https://issues.apache.org/jira/browse/ARROW-11857
Project: Apache Arrow
Issue Type: Bug
Components: Python
Affects Versions: 3.0.0
Environment: OS: Debian GNU/Linux 10 (buster) x86_64
Kernel: 4.19.0-14-amd64
CPU: Intel i7-6700K (8) @ 4.200GHz
Memory: 32122MiB
Python: v3.7.3
Reporter: Anton Friberg
When using the new Dataset API under v3.0.0 it instantly crashes with
{code:java}
terminate called after throwing an instance of 'std::system_error'
what(): Resource temporarily unavailable{code}
This does not happen in an earlier version. The error message leads me to believe that the issue is not on the Python side but might be in the C++ libraries.
As background, I am using the new Dataset API by calling the following
{code:java}
s3_fs = fs.S3FileSystem(<minio credentials>)
dataset = pq.ParquetDataset(
f"{bucket}/{base_path}",
filesystem=s3_fs,
partitioning="hive",
use_legacy_dataset=False,
filters=filters
)
dataframe = dataset.read_pandas(columns=columns).to_pandas(){code}
The dataset itself contains 10,000s of files around 100 MB in size and is created using incremental bulk processing from pandas and pyarrow v1.0.1.
I am suspecting an issue with a limit in the total amount of threads that are spawning but I have been unable to resolve it by calling
{code:java}
pyarrow.set_cpu_count(1) {code}
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