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Posted to issues@arrow.apache.org by "Neal Richardson (JIRA)" <ji...@apache.org> on 2019/05/15 21:57:00 UTC
[jira] [Updated] (ARROW-5332) [R] R package fails to build/install:
error in dyn.load()
[ https://issues.apache.org/jira/browse/ARROW-5332?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Neal Richardson updated ARROW-5332:
-----------------------------------
Summary: [R] R package fails to build/install: error in dyn.load() (was: [R][C++] R package fails to build/install: error in dyn.load())
> [R] R package fails to build/install: error in dyn.load()
> ---------------------------------------------------------
>
> Key: ARROW-5332
> URL: https://issues.apache.org/jira/browse/ARROW-5332
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Reporter: Neal Richardson
> Assignee: Neal Richardson
> Priority: Major
> Fix For: 0.14.0
>
>
> Symptoms: R package appears to build but fails to load because it can't find libarrow.14 (with slight name variations per platform). On macOS, I see
> {code:java}
> # compiling compiling
> installing to /Users/enpiar/R/00LOCK-r/00new/arrow/libs
> ** R
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** testing if installed package can be loaded from temporary location
> Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...):
> unable to load shared object '/Users/enpiar/R/00LOCK-r/00new/arrow/libs/arrow.so':
> dlopen(/Users/enpiar/R/00LOCK-r/00new/arrow/libs/arrow.so, 6): Library not loaded: @rpath/libarrow.14.dylib
> Referenced from: /Users/enpiar/R/00LOCK-r/00new/arrow/libs/arrow.so
> Reason: image not found
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing ‘/Users/enpiar/R/arrow’{code}
> The sparklyr R package has also experienced this on Ubuntu:
> {code:java}
> ** testing if installed package can be loaded from temporary location
> Error: package or namespace load failed for 'arrow' in dyn.load(file, DLLpath = DLLpath, ...):
> unable to load shared object '/home/travis/R/Library/00LOCK-arrow/00new/arrow/libs/arrow.so':
> libarrow.so.14: cannot open shared object file: No such file or directory
> {code}
> This problem does not occur with the 0.13 release. I can `brew install apache-arrow` and then successfully install the R package; sparklyr on Travis tests 0.11, 0.13, and the latest of master branch of apache/arrow, and only the master branch fails.
> According to sparklyr's build history on Travis, the last passing build with master branch of arrow was [April 5|https://travis-ci.org/rstudio/sparklyr/builds/516222934]; the next build was on [April 22|https://travis-ci.org/rstudio/sparklyr/jobs/523326800] and it failed. So something changed in that window, it seems.
> There's nothing obvious (to me) in the CMake or make output that would indicate an error in the C++ build.
> Interestingly, the R build on arrow's Travis-CI is not failing, so in addition to there apparently being some change that broke both [how the R package recommends building|https://github.com/apache/arrow/blob/7a495e7800ed2f184da1d5ffc4efde7d6c4abcac/r/README.Rmd#L38-L43] and [how sparklyr is building|https://github.com/rstudio/sparklyr/blob/master/ci/arrow-build.sh], there appears to be some [combination of flags|https://github.com/apache/arrow/blob/master/ci/travis_before_script_cpp.sh] that does result in a successful build.
> Browsing through patches that landed between April 5-22, three seemed like suspects, though I haven't yet tried bisecting the history to find out which commit exactly introduces the relevant change.
> * [https://github.com/apache/arrow/commit/f014d76c68a9a977a19f87f7ea77511e4753bb8c]
> * [https://github.com/apache/arrow/commit/d9f675328edb1be9fc63a753cf05e3b4e9024707]
> * [https://github.com/apache/arrow/commit/76e1bc5dfb9d08e31eddd5cbcc0b1bab934da2c7]
> cc [~romainfrancois] [~javierluraschi]
>
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