svn commit: r690405 [24/26] - in /incubator/uima/uimaj/trunk/uimaj-core: ./ src/main/java/org/apache/uima/ src/main/java/org/apache/uima/analysis_component/ src/main/java/org/apache/uima/analysis_engine/ src/main/java/org/apache/uima/analysis_engine/an...

[sc...@apache.org]

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Modified: incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/impl/XmiCasSerializerTest.java
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/impl/XmiCasSerializerTest.java?rev=690405&r1=690404&r2=690405&view=diff
==============================================================================
--- incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/impl/XmiCasSerializerTest.java (original)
+++ incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/impl/XmiCasSerializerTest.java Fri Aug 29 15:10:52 2008
@@ -1,139 +1,139 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- * 
- *   http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-
-package org.apache.uima.cas.impl;
-
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.OutputStream;
-
-import javax.xml.transform.OutputKeys;
-
-import junit.framework.TestCase;
-
-import org.apache.uima.UIMAFramework;
-import org.apache.uima.cas.CAS;
-import org.apache.uima.resource.metadata.TypeSystemDescription;
-import org.apache.uima.test.junit_extension.JUnitExtension;
-import org.apache.uima.util.CasCreationUtils;
-import org.apache.uima.util.XMLInputSource;
-import org.apache.uima.util.XMLSerializer;
-import org.xml.sax.SAXParseException;
-
-/**
- * Test case for XMI serialization, in particular, invalid XML 1.0 characters. Other aspects of XMI
- * serialization are tested elsewhere.
- */
-public class XmiCasSerializerTest extends TestCase {
-
-  private TypeSystemDescription typeSystemDesc = null;
-
-  private File outputFile = null;
-
-  /**
-   * @param arg0
-   */
-  public XmiCasSerializerTest(String arg0) {
-    super(arg0);
-  }
-
-  /*
-   * (non-Javadoc)
-   * 
-   * @see junit.framework.TestCase#setUp()
-   */
-  protected void setUp() throws Exception {
-    File typeSystemFile = JUnitExtension.getFile("ExampleCas/testTypeSystem.xml");
-    // Temp output file, deleted on exit.
-    this.outputFile = new File(JUnitExtension.getFile("ExampleCas"),
-        "xmiSerializerInvalidCharsTestOutput.xmi");
-    this.typeSystemDesc = UIMAFramework.getXMLParser().parseTypeSystemDescription(
-        new XMLInputSource(typeSystemFile));
-  }
-
-  public void testInvalidCharsInDocumentText() throws Exception {
-    CAS cas = CasCreationUtils.createCas(this.typeSystemDesc, null, null);
-    char badChar = 0x1A;
-    cas.setDocumentText("Text with bad char: " + badChar);
-    OutputStream out = new FileOutputStream(this.outputFile);
-    XMLSerializer xmlSerializer = new XMLSerializer(out);
-    XmiCasSerializer xmiCasSerializer = new XmiCasSerializer(cas.getTypeSystem());
-    boolean caughtException = false;
-    try {
-      xmiCasSerializer.serialize(cas, xmlSerializer.getContentHandler());
-    } catch (SAXParseException e) {
-      caughtException = true;
-    }
-    out.close();
-    assertTrue("XMI serialization of document text with bad XML 1.0 char should throw exception",
-        caughtException);
-    
-    //but when XML 1.1 output is being generated, don't fail on control chracters which are valid in 1.1.
-    out = new FileOutputStream(this.outputFile);
-    try {
-      XMLSerializer xml11Serializer = new XMLSerializer(out);
-      xml11Serializer.setOutputProperty(OutputKeys.VERSION,"1.1");
-      xmiCasSerializer.serialize(cas, xml11Serializer.getContentHandler());
-    }
-    finally {
-      out.close();
-    }
-  }
-
-  public void testInvalidCharsInFeatureValue() throws Exception {
-    CAS cas = CasCreationUtils.createCas(this.typeSystemDesc, null, null);
-    char badChar = 0x1A;
-    cas.setDocumentLanguage("a" + badChar);
-    OutputStream out = new FileOutputStream(this.outputFile);
-    XMLSerializer xmlSerializer = new XMLSerializer(out);
-    XmiCasSerializer xmiCasSerializer = new XmiCasSerializer(cas.getTypeSystem());
-    boolean caughtException = false;
-    try {
-      xmiCasSerializer.serialize(cas, xmlSerializer.getContentHandler());
-    } catch (SAXParseException e) {
-      caughtException = true;
-    }
-    out.close();
-    assertTrue("XMI serialization of document text with bad XML 1.0 char should throw exception",
-        caughtException);
-    
-    //but when XML 1.1 output is being generated, don't fail on control chracters which are valid in 1.1.
-    out = new FileOutputStream(this.outputFile);
-    try {
-      XMLSerializer xml11Serializer = new XMLSerializer(out);
-      xml11Serializer.setOutputProperty(OutputKeys.VERSION,"1.1");
-      xmiCasSerializer.serialize(cas, xml11Serializer.getContentHandler());
-    }
-    finally {
-      out.close();
-    }    
-  }
-
-  /*
-   * (non-Javadoc)
-   * 
-   * @see junit.framework.TestCase#tearDown()
-   */
-  protected void tearDown() throws Exception {
-    if ((this.outputFile != null) && this.outputFile.exists()) {
-      this.outputFile.delete();
-    }
-  }
-
-}
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.cas.impl;
+
+import java.io.File;
+import java.io.FileOutputStream;
+import java.io.OutputStream;
+
+import javax.xml.transform.OutputKeys;
+
+import junit.framework.TestCase;
+
+import org.apache.uima.UIMAFramework;
+import org.apache.uima.cas.CAS;
+import org.apache.uima.resource.metadata.TypeSystemDescription;
+import org.apache.uima.test.junit_extension.JUnitExtension;
+import org.apache.uima.util.CasCreationUtils;
+import org.apache.uima.util.XMLInputSource;
+import org.apache.uima.util.XMLSerializer;
+import org.xml.sax.SAXParseException;
+
+/**
+ * Test case for XMI serialization, in particular, invalid XML 1.0 characters. Other aspects of XMI
+ * serialization are tested elsewhere.
+ */
+public class XmiCasSerializerTest extends TestCase {
+
+  private TypeSystemDescription typeSystemDesc = null;
+
+  private File outputFile = null;
+
+  /**
+   * @param arg0
+   */
+  public XmiCasSerializerTest(String arg0) {
+    super(arg0);
+  }
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see junit.framework.TestCase#setUp()
+   */
+  protected void setUp() throws Exception {
+    File typeSystemFile = JUnitExtension.getFile("ExampleCas/testTypeSystem.xml");
+    // Temp output file, deleted on exit.
+    this.outputFile = new File(JUnitExtension.getFile("ExampleCas"),
+        "xmiSerializerInvalidCharsTestOutput.xmi");
+    this.typeSystemDesc = UIMAFramework.getXMLParser().parseTypeSystemDescription(
+        new XMLInputSource(typeSystemFile));
+  }
+
+  public void testInvalidCharsInDocumentText() throws Exception {
+    CAS cas = CasCreationUtils.createCas(this.typeSystemDesc, null, null);
+    char badChar = 0x1A;
+    cas.setDocumentText("Text with bad char: " + badChar);
+    OutputStream out = new FileOutputStream(this.outputFile);
+    XMLSerializer xmlSerializer = new XMLSerializer(out);
+    XmiCasSerializer xmiCasSerializer = new XmiCasSerializer(cas.getTypeSystem());
+    boolean caughtException = false;
+    try {
+      xmiCasSerializer.serialize(cas, xmlSerializer.getContentHandler());
+    } catch (SAXParseException e) {
+      caughtException = true;
+    }
+    out.close();
+    assertTrue("XMI serialization of document text with bad XML 1.0 char should throw exception",
+        caughtException);
+    
+    //but when XML 1.1 output is being generated, don't fail on control chracters which are valid in 1.1.
+    out = new FileOutputStream(this.outputFile);
+    try {
+      XMLSerializer xml11Serializer = new XMLSerializer(out);
+      xml11Serializer.setOutputProperty(OutputKeys.VERSION,"1.1");
+      xmiCasSerializer.serialize(cas, xml11Serializer.getContentHandler());
+    }
+    finally {
+      out.close();
+    }
+  }
+
+  public void testInvalidCharsInFeatureValue() throws Exception {
+    CAS cas = CasCreationUtils.createCas(this.typeSystemDesc, null, null);
+    char badChar = 0x1A;
+    cas.setDocumentLanguage("a" + badChar);
+    OutputStream out = new FileOutputStream(this.outputFile);
+    XMLSerializer xmlSerializer = new XMLSerializer(out);
+    XmiCasSerializer xmiCasSerializer = new XmiCasSerializer(cas.getTypeSystem());
+    boolean caughtException = false;
+    try {
+      xmiCasSerializer.serialize(cas, xmlSerializer.getContentHandler());
+    } catch (SAXParseException e) {
+      caughtException = true;
+    }
+    out.close();
+    assertTrue("XMI serialization of document text with bad XML 1.0 char should throw exception",
+        caughtException);
+    
+    //but when XML 1.1 output is being generated, don't fail on control chracters which are valid in 1.1.
+    out = new FileOutputStream(this.outputFile);
+    try {
+      XMLSerializer xml11Serializer = new XMLSerializer(out);
+      xml11Serializer.setOutputProperty(OutputKeys.VERSION,"1.1");
+      xmiCasSerializer.serialize(cas, xml11Serializer.getContentHandler());
+    }
+    finally {
+      out.close();
+    }    
+  }
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see junit.framework.TestCase#tearDown()
+   */
+  protected void tearDown() throws Exception {
+    if ((this.outputFile != null) && this.outputFile.exists()) {
+      this.outputFile.delete();
+    }
+  }
+
+}

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Modified: incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/AnnotationTreeTest.java
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/AnnotationTreeTest.java?rev=690405&r1=690404&r2=690405&view=diff
==============================================================================
--- incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/AnnotationTreeTest.java (original)
+++ incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/AnnotationTreeTest.java Fri Aug 29 15:10:52 2008
@@ -1,95 +1,95 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- * 
- *   http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-
-package org.apache.uima.cas.test;
-
-import java.io.File;
-import java.io.IOException;
-
-import javax.xml.parsers.SAXParser;
-import javax.xml.parsers.SAXParserFactory;
-
-import junit.framework.TestCase;
-
-import org.apache.uima.UIMAFramework;
-import org.apache.uima.cas.CAS;
-import org.apache.uima.cas.impl.XCASDeserializer;
-import org.apache.uima.cas.text.AnnotationTreeNode;
-import org.apache.uima.resource.metadata.FsIndexDescription;
-import org.apache.uima.resource.metadata.TypeSystemDescription;
-import org.apache.uima.test.junit_extension.JUnitExtension;
-import org.apache.uima.util.CasCreationUtils;
-import org.apache.uima.util.XMLInputSource;
-
-public class AnnotationTreeTest extends TestCase {
-
-  private static final String casDataDirName = "CASTests";
-
-  private static final String xcasSampleDirName = "xcas";
-
-  private static final String sampleXcas1FileName = "sample1.xcas";
-
-  private static final String sampleTsFileName = "sample.ts";
-
-  public AnnotationTreeTest(String desc) {
-    super(desc);
-  }
-
-  public void testTree() throws Exception {
-
-    // The two XCASes used in this test contain the same data, but the
-    // second one contains all annotations twice. So in that case, every
-    // other annotation is filtered by the unambiguous iterator.
-
-    File dataDir = JUnitExtension.getFile(casDataDirName);
-    File xcasDir = new File(dataDir, xcasSampleDirName);
-
-    try {
-      File tsFile = new File(xcasDir, sampleTsFileName);
-      Object descriptor = UIMAFramework.getXMLParser().parse(new XMLInputSource(tsFile));
-      // instantiate CAS to get type system. Also build style
-      // map file if there is none.
-      TypeSystemDescription tsDesc = (TypeSystemDescription) descriptor;
-      CAS cas = CasCreationUtils.createCas(tsDesc, null, new FsIndexDescription[0]);
-      SAXParser parser = SAXParserFactory.newInstance().newSAXParser();
-      XCASDeserializer xcasDeserializer = new XCASDeserializer(cas.getTypeSystem());
-      File xcasFile = new File(xcasDir, sampleXcas1FileName);
-      parser.parse(xcasFile, xcasDeserializer.getXCASHandler(cas));
-      AnnotationTreeNode root = cas.getAnnotationIndex().tree(cas.getDocumentAnnotation())
-	  .getRoot();
-      // There are 7 paragraph annotations in the CAS.
-      assertTrue("There should be 7 paragraphs, but are: " + root.getChildCount(), root
-	  .getChildCount() == 7);
-      // The first paragraph contains 19 sentences, each subsequent one
-      // contains only one sentence.
-      assertTrue(root.getChild(0).getChildCount() == 19);
-      for (int i = 1; i < root.getChildCount(); i++) {
-	assertTrue(root.getChild(i).getChildCount() == 1);
-      }
-      // First sentence contains 8 tokens.
-      assertTrue(root.getChild(0).getChild(0).getChildCount() == 8);
-      // Same for only sentence in second paragraph.
-      assertTrue(root.getChild(1).getChild(0).getChildCount() == 8);
-    } catch (IOException e) {
-      e.printStackTrace();
-      assertTrue(false);
-    }
-  }
-
-}
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.cas.test;
+
+import java.io.File;
+import java.io.IOException;
+
+import javax.xml.parsers.SAXParser;
+import javax.xml.parsers.SAXParserFactory;
+
+import junit.framework.TestCase;
+
+import org.apache.uima.UIMAFramework;
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.impl.XCASDeserializer;
+import org.apache.uima.cas.text.AnnotationTreeNode;
+import org.apache.uima.resource.metadata.FsIndexDescription;
+import org.apache.uima.resource.metadata.TypeSystemDescription;
+import org.apache.uima.test.junit_extension.JUnitExtension;
+import org.apache.uima.util.CasCreationUtils;
+import org.apache.uima.util.XMLInputSource;
+
+public class AnnotationTreeTest extends TestCase {
+
+  private static final String casDataDirName = "CASTests";
+
+  private static final String xcasSampleDirName = "xcas";
+
+  private static final String sampleXcas1FileName = "sample1.xcas";
+
+  private static final String sampleTsFileName = "sample.ts";
+
+  public AnnotationTreeTest(String desc) {
+    super(desc);
+  }
+
+  public void testTree() throws Exception {
+
+    // The two XCASes used in this test contain the same data, but the
+    // second one contains all annotations twice. So in that case, every
+    // other annotation is filtered by the unambiguous iterator.
+
+    File dataDir = JUnitExtension.getFile(casDataDirName);
+    File xcasDir = new File(dataDir, xcasSampleDirName);
+
+    try {
+      File tsFile = new File(xcasDir, sampleTsFileName);
+      Object descriptor = UIMAFramework.getXMLParser().parse(new XMLInputSource(tsFile));
+      // instantiate CAS to get type system. Also build style
+      // map file if there is none.
+      TypeSystemDescription tsDesc = (TypeSystemDescription) descriptor;
+      CAS cas = CasCreationUtils.createCas(tsDesc, null, new FsIndexDescription[0]);
+      SAXParser parser = SAXParserFactory.newInstance().newSAXParser();
+      XCASDeserializer xcasDeserializer = new XCASDeserializer(cas.getTypeSystem());
+      File xcasFile = new File(xcasDir, sampleXcas1FileName);
+      parser.parse(xcasFile, xcasDeserializer.getXCASHandler(cas));
+      AnnotationTreeNode root = cas.getAnnotationIndex().tree(cas.getDocumentAnnotation())
+	  .getRoot();
+      // There are 7 paragraph annotations in the CAS.
+      assertTrue("There should be 7 paragraphs, but are: " + root.getChildCount(), root
+	  .getChildCount() == 7);
+      // The first paragraph contains 19 sentences, each subsequent one
+      // contains only one sentence.
+      assertTrue(root.getChild(0).getChildCount() == 19);
+      for (int i = 1; i < root.getChildCount(); i++) {
+	assertTrue(root.getChild(i).getChildCount() == 1);
+      }
+      // First sentence contains 8 tokens.
+      assertTrue(root.getChild(0).getChild(0).getChildCount() == 8);
+      // Same for only sentence in second paragraph.
+      assertTrue(root.getChild(1).getChild(0).getChildCount() == 8);
+    } catch (IOException e) {
+      e.printStackTrace();
+      assertTrue(false);
+    }
+  }
+
+}

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Modified: incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/IndexRepositoryTest.java
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/IndexRepositoryTest.java?rev=690405&r1=690404&r2=690405&view=diff
==============================================================================
--- incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/IndexRepositoryTest.java (original)
+++ incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/IndexRepositoryTest.java Fri Aug 29 15:10:52 2008
@@ -1,82 +1,82 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- * 
- *   http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-package org.apache.uima.cas.test;
-
-import junit.framework.TestCase;
-
-import org.apache.uima.cas.CAS;
-import org.apache.uima.cas.FSIndexRepository;
-import org.apache.uima.cas.FSIterator;
-import org.apache.uima.cas.FeatureStructure;
-import org.apache.uima.cas.Type;
-import org.apache.uima.cas.TypeSystem;
-import org.apache.uima.cas.text.AnnotationFS;
-
-/**
- * 
- */
-public class IndexRepositoryTest extends TestCase {
-
-  CAS cas;
-
-  TypeSystem typeSystem;
-
-  FSIndexRepository indexRep;
-
-  /*
-   * (non-Javadoc)
-   * 
-   * @see junit.framework.TestCase#setUp()
-   */
-  protected void setUp() throws Exception {
-    super.setUp();
-    this.cas = CASInitializer.initCas(new CASTestSetup());
-    this.typeSystem = this.cas.getTypeSystem();
-    this.indexRep = this.cas.getIndexRepository();
-  }
-
-  public void testDefaultBagIndex() throws Exception {
-    // create an instance of a non-annotation type
-    Type tokenTypeType = this.typeSystem.getType(CASTestSetup.TOKEN_TYPE_TYPE);
-    FeatureStructure tokenTypeFs1 = this.cas.createFS(tokenTypeType);
-    assertFalse(tokenTypeFs1 instanceof AnnotationFS);
-
-    // add to indexes
-    this.indexRep.addFS(tokenTypeFs1);
-
-    // now try to retrieve
-    FSIterator iter = this.indexRep.getAllIndexedFS(tokenTypeType);
-    assertTrue(iter.hasNext());
-    assertEquals(tokenTypeFs1, iter.next());
-    assertFalse(iter.hasNext());
-
-    // add a second instance
-    FeatureStructure tokenTypeFs2 = this.cas.createFS(tokenTypeType);
-    assertFalse(tokenTypeFs2 instanceof AnnotationFS);
-    this.indexRep.addFS(tokenTypeFs2);
-
-    // now there should be two instances in the index
-    FSIterator iter2 = this.indexRep.getAllIndexedFS(tokenTypeType);
-    assertTrue(iter2.hasNext());
-    iter2.next();
-    assertTrue(iter2.hasNext());
-    iter2.next();
-    assertFalse(iter.hasNext());
-  }
-}
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.uima.cas.test;
+
+import junit.framework.TestCase;
+
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.FSIndexRepository;
+import org.apache.uima.cas.FSIterator;
+import org.apache.uima.cas.FeatureStructure;
+import org.apache.uima.cas.Type;
+import org.apache.uima.cas.TypeSystem;
+import org.apache.uima.cas.text.AnnotationFS;
+
+/**
+ * 
+ */
+public class IndexRepositoryTest extends TestCase {
+
+  CAS cas;
+
+  TypeSystem typeSystem;
+
+  FSIndexRepository indexRep;
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see junit.framework.TestCase#setUp()
+   */
+  protected void setUp() throws Exception {
+    super.setUp();
+    this.cas = CASInitializer.initCas(new CASTestSetup());
+    this.typeSystem = this.cas.getTypeSystem();
+    this.indexRep = this.cas.getIndexRepository();
+  }
+
+  public void testDefaultBagIndex() throws Exception {
+    // create an instance of a non-annotation type
+    Type tokenTypeType = this.typeSystem.getType(CASTestSetup.TOKEN_TYPE_TYPE);
+    FeatureStructure tokenTypeFs1 = this.cas.createFS(tokenTypeType);
+    assertFalse(tokenTypeFs1 instanceof AnnotationFS);
+
+    // add to indexes
+    this.indexRep.addFS(tokenTypeFs1);
+
+    // now try to retrieve
+    FSIterator iter = this.indexRep.getAllIndexedFS(tokenTypeType);
+    assertTrue(iter.hasNext());
+    assertEquals(tokenTypeFs1, iter.next());
+    assertFalse(iter.hasNext());
+
+    // add a second instance
+    FeatureStructure tokenTypeFs2 = this.cas.createFS(tokenTypeType);
+    assertFalse(tokenTypeFs2 instanceof AnnotationFS);
+    this.indexRep.addFS(tokenTypeFs2);
+
+    // now there should be two instances in the index
+    FSIterator iter2 = this.indexRep.getAllIndexedFS(tokenTypeType);
+    assertTrue(iter2.hasNext());
+    iter2.next();
+    assertTrue(iter2.hasNext());
+    iter2.next();
+    assertFalse(iter.hasNext());
+  }
+}

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Modified: incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/SofaTest.java
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/SofaTest.java?rev=690405&r1=690404&r2=690405&view=diff
==============================================================================
--- incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/SofaTest.java (original)
+++ incubator/uima/uimaj/trunk/uimaj-core/src/test/java/org/apache/uima/cas/test/SofaTest.java Fri Aug 29 15:10:52 2008
@@ -1,679 +1,679 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- * 
- *   http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-
-package org.apache.uima.cas.test;
-
-import java.io.ByteArrayInputStream;
-import java.io.ByteArrayOutputStream;
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.io.FileWriter;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.OutputStream;
-import java.nio.ByteBuffer;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.Map;
-import java.util.StringTokenizer;
-
-import junit.framework.TestCase;
-
-import org.apache.uima.UIMAFramework;
-import org.apache.uima.UimaContextAdmin;
-import org.apache.uima.cas.ArrayFS;
-import org.apache.uima.cas.ByteArrayFS;
-import org.apache.uima.cas.CAS;
-import org.apache.uima.cas.DoubleArrayFS;
-import org.apache.uima.cas.FSIndex;
-import org.apache.uima.cas.FSIterator;
-import org.apache.uima.cas.Feature;
-import org.apache.uima.cas.FloatArrayFS;
-import org.apache.uima.cas.IntArrayFS;
-import org.apache.uima.cas.LongArrayFS;
-import org.apache.uima.cas.ShortArrayFS;
-import org.apache.uima.cas.SofaFS;
-import org.apache.uima.cas.Type;
-import org.apache.uima.cas.admin.CASFactory;
-import org.apache.uima.cas.admin.CASMgr;
-import org.apache.uima.cas.admin.FSIndexRepositoryMgr;
-import org.apache.uima.cas.admin.TypeSystemMgr;
-import org.apache.uima.cas.impl.CASImpl;
-import org.apache.uima.cas.impl.CASSerializer;
-import org.apache.uima.cas.impl.Serialization;
-import org.apache.uima.cas.impl.XCASDeserializer;
-import org.apache.uima.cas.impl.XCASSerializer;
-import org.apache.uima.cas.text.AnnotationFS;
-import org.apache.uima.impl.SofaID_impl;
-import org.apache.uima.jcas.JCas;
-import org.apache.uima.resource.metadata.TypeSystemDescription;
-import org.apache.uima.test.junit_extension.JUnitExtension;
-import org.apache.uima.util.CasCreationUtils;
-import org.apache.uima.util.XMLSerializer;
-import org.xml.sax.SAXException;
-
-
-public class SofaTest extends TestCase {
-
-  private CASMgr casMgr;
-
-  private CAS cas;
-
-  private Type annotationType;
-
-  private Type docAnnotationType;
-
-  private Type crossType;
-
-  private Feature otherFeat;
-
-//  private Feature annotSofaFeat;
-
-  public SofaTest(String arg) {
-    super(arg);
-  }
-
-  /**
-   * @see junit.framework.TestCase#setUp()
-   */
-  protected void setUp() throws Exception {
-    try {
-      super.setUp();
-      this.casMgr = CASFactory.createCAS();
-      CasCreationUtils.setupTypeSystem(this.casMgr, (TypeSystemDescription) null);
-      // Create a writable type system.
-      TypeSystemMgr tsa = this.casMgr.getTypeSystemMgr();
-      // Add new types and features.
-      // Type topType = tsa.getTopType();
-      this.annotationType = tsa.getType(CAS.TYPE_NAME_ANNOTATION);
-//      annotSofaFeat = annotationType.getFeatureByBaseName(CAS.FEATURE_BASE_NAME_SOFA);
-      this.docAnnotationType = tsa.getType(CAS.TYPE_NAME_DOCUMENT_ANNOTATION);
-      assertTrue(this.annotationType != null);
-      this.crossType = tsa.addType("sofa.test.CrossAnnotation", this.annotationType);
-      this.otherFeat = tsa.addFeature("otherAnnotation", this.crossType, this.annotationType);
-      // Commit the type system.
-      ((CASImpl) this.casMgr).commitTypeSystem();
-
-      // Create the Base indexes.
-      this.casMgr.initCASIndexes();
-      FSIndexRepositoryMgr irm = this.casMgr.getIndexRepositoryMgr();
-      // init.initIndexes(irm, casMgr.getTypeSystemMgr());
-      irm.commit();
-
-      this.cas = this.casMgr.getCAS().getView(CAS.NAME_DEFAULT_SOFA);
-      assertTrue(this.cas.getSofa() == null);
-      assertTrue(this.cas.getViewName().equals(CAS.NAME_DEFAULT_SOFA));
-    } catch (Exception e) {
-      JUnitExtension.handleException(e);
-    }
-
-  }
-
-  /**
-   * Test driver.
-   */
-  public void testMain() throws Exception {
-    try {
-
-      // Create a Sofa (using old APIs for now)
-      SofaID_impl id = new SofaID_impl();
-      id.setSofaID("EnglishDocument");
-      SofaFS es = this.cas.createSofa(id, "text");
-      // Initial View is #1!!!
-      assertTrue(2 == es.getSofaRef());
-
-      // Set the document text
-      es.setLocalSofaData("this beer is good");
-
-      // Test Multiple Sofas across XCAS serialization
-      XCASSerializer ser = new XCASSerializer(this.cas.getTypeSystem());
-      OutputStream outputXCAS = new FileOutputStream("Sofa.xcas");
-      XMLSerializer xmlSer = new XMLSerializer(outputXCAS);
-      try {
-        ser.serialize(cas, xmlSer.getContentHandler());
-        outputXCAS.close();
-      } catch (IOException e) {
-        e.printStackTrace();
-      } catch (SAXException e) {
-        e.printStackTrace();
-      }
-
-      // Deserialize XCAS
-     this.cas.reset();
-      InputStream inputXCAS = new FileInputStream("Sofa.xcas");
-      try {
-        XCASDeserializer.deserialize(inputXCAS, cas, false);
-        inputXCAS.close();
-      } catch (SAXException e2) {
-        e2.printStackTrace();
-      } catch (IOException e2) {
-        e2.printStackTrace();
-      }
-
-      // Add a new Sofa
-      // SofaID_impl gid = new SofaID_impl();
-      // gid.setSofaID("GermanDocument");
-      // SofaFS gs = ((CASImpl)cas).createSofa(gid,"text");
-      CAS gerTcas =this.cas.createView("GermanDocument");
-      assertTrue(gerTcas.getViewName().equals("GermanDocument"));
-      SofaFS gs = gerTcas.getSofa();
-
-      assertTrue(gs != null);
-      assertTrue(3 == gs.getSofaRef());
-
-      // Set the document text
-      // gs.setLocalSofaData("das bier ist gut");
-      gerTcas.setDocumentText("das bier ist gut");
-
-      // Test multiple Sofas across binary serialization
-      CASSerializer cs = Serialization.serializeNoMetaData(cas);
-      cas = Serialization.createCAS(casMgr, cs);
-
-      // Add a new Sofa
-      // SofaID_impl fid = new SofaID_impl();
-      // fid.setSofaID("FrenchDocument");
-      // SofaFS fs = ((CASImpl)cas).createSofa(fid, "text");
-      CAS frT =this.cas.createView("FrenchDocument");
-      assertTrue(frT.getViewName().equals("FrenchDocument"));
-      SofaFS fs = frT.getSofa();
-      assertTrue(fs != null);
-      assertTrue(4 == fs.getSofaRef());
-
-      // Test multiple Sofas across blob serialization
-      ByteArrayOutputStream fos = new ByteArrayOutputStream();
-      Serialization.serializeCAS(cas, fos);
-     this.cas.reset();
-      ByteArrayInputStream fis = new ByteArrayInputStream(fos.toByteArray());
-      Serialization.deserializeCAS(cas, fis);
-
-      // Open TCas views of some Sofas
-      CAS engTcas =this.cas.getView(es);
-      assertTrue(engTcas.getViewName().equals("EnglishDocument"));
-      CAS frTcas =this.cas.getView("FrenchDocument");
-
-      // Set the document text off SofaFS after the CAS view exists
-      frTcas.setSofaDataString("cette biere est bonne", "text");
-
-      // Create standard annotations against one and cross annotations
-      // against the other
-      int engEnd = 0;
-      int gerEnd = 0;
-      int frEnd = 0;
-      String engText = engTcas.getDocumentText();
-      String gerText = gerTcas.getDocumentText();
-      String frText = frTcas.getDocumentText();
-      StringTokenizer est = new StringTokenizer(engText);
-      StringTokenizer gst = new StringTokenizer(gerText);
-      StringTokenizer fst = new StringTokenizer(frText);
-
-      while (est.hasMoreTokens()) {
-        assertTrue(gst.hasMoreTokens());
-        assertTrue(fst.hasMoreTokens());
-
-        String eTok = est.nextToken();
-        int engBegin = engText.indexOf(eTok, engEnd);
-        engEnd = engBegin + eTok.length();
-
-        String gTok = gst.nextToken();
-        int gerBegin = gerText.indexOf(gTok, gerEnd);
-        gerEnd = gerBegin + gTok.length();
-
-        String fTok = fst.nextToken();
-        int frBegin = frText.indexOf(fTok, frEnd);
-        frEnd = frBegin + fTok.length();
-
-        AnnotationFS engAnnot = engTcas.createAnnotation(annotationType, engBegin, engEnd);
-        engTcas.getIndexRepository().addFS(engAnnot);
-
-        AnnotationFS frAnnot = frTcas.createAnnotation(this.annotationType, frBegin, frEnd);
-        frTcas.getIndexRepository().addFS(frAnnot);
-
-        AnnotationFS gerAnnot = gerTcas.createAnnotation(this.crossType, gerBegin, gerEnd);
-        gerAnnot.setFeatureValue(this.otherFeat, engAnnot);
-        gerTcas.getIndexRepository().addFS(gerAnnot);
-      }
-
-      // Test that the annotations are in separate index spaces, and that
-      // Sofas are indexed
-      // FSIndex sofaIndex =
-      // cas.getIndexRepository().getIndex(CAS.SOFA_INDEX_NAME);
-      FSIterator sofaIter =this.cas.getSofaIterator();
-      int numSofas = 0;
-      while (sofaIter.isValid()) {
-        numSofas++;
-        sofaIter.moveToNext();
-      }
-      FSIndex engIndex = engTcas.getAnnotationIndex();
-      FSIndex gerIndex = gerTcas.getAnnotationIndex();
-      FSIndex frIndex = frTcas.getAnnotationIndex();
-      // assertTrue(sofaIndex.size() == 3); // 3 sofas
-      assertTrue(numSofas == 3);
-      assertTrue(engIndex.size() == 5); // 4 annots plus
-      // documentAnnotation
-      assertTrue(gerIndex.size() == 5); // 4 annots plus
-      // documentAnnotation
-      assertTrue(frIndex.size() == 5); // 4 annots plus
-      // documentAnnotation
-
-      // Test that the annotations are of the correct types
-      FSIterator engIt = engIndex.iterator();
-      FSIterator gerIt = gerIndex.iterator();
-      FSIterator frIt = frIndex.iterator();
-      AnnotationFS engAnnot = (AnnotationFS) engIt.get();
-      AnnotationFS gerAnnot = (AnnotationFS) gerIt.get();
-      AnnotationFS frAnnot = (AnnotationFS) frIt.get();
-      assertTrue(docAnnotationType.getName().equals(engAnnot.getType().getName()));
-      assertTrue(docAnnotationType.getName().equals(gerAnnot.getType().getName()));
-      assertTrue(docAnnotationType.getName().equals(frAnnot.getType().getName()));
-
-      engIt.moveToNext();
-      gerIt.moveToNext();
-      frIt.moveToNext();
-      engAnnot = (AnnotationFS) engIt.get();
-      gerAnnot = (AnnotationFS) gerIt.get();
-      frAnnot = (AnnotationFS) frIt.get();
-      assertTrue(annotationType.getName().equals(engAnnot.getType().getName()));
-      assertTrue(("this").equals(engAnnot.getCoveredText()));
-      assertTrue(annotationType.getName().equals(frAnnot.getType().getName()));
-      assertTrue(("cette").equals(frAnnot.getCoveredText()));
-      assertTrue(crossType.getName().equals(gerAnnot.getType().getName()));
-      assertTrue(("das").equals(gerAnnot.getCoveredText()));
-
-      // Test that the other annotation feature of cross annotations works
-      AnnotationFS crossAnnot = (AnnotationFS) gerAnnot.getFeatureValue(otherFeat);
-      assertTrue(annotationType.getName().equals(crossAnnot.getType().getName()));
-      assertTrue(("this").equals(crossAnnot.getCoveredText()));
-     
-      //Test equals method for same annotation obtained through different views
-      assertEquals(engAnnot, crossAnnot);
-      
-      // Test that annotations accessed from a reference in the base CAS
-      // work correctly
-      ArrayFS anArray =this.cas.createArrayFS(3);
-      anArray.set(0, engAnnot);
-      anArray.set(1, frAnnot);
-      anArray.set(2, gerAnnot);
-      AnnotationFS tstAnnot = (AnnotationFS) anArray.get(0);
-      assertTrue(("this").equals(tstAnnot.getCoveredText()));
-      tstAnnot = (AnnotationFS) anArray.get(1);
-      assertTrue(("cette").equals(tstAnnot.getCoveredText()));
-      tstAnnot = (AnnotationFS) anArray.get(2);
-      assertTrue(("das").equals(tstAnnot.getCoveredText()));
-    } catch (Exception e) {
-      JUnitExtension.handleException(e);
-    }
-
-  }
-
-  /**
-   * Test stream access to Sofa Data.
-   * 
-   * @throws Exception
-   */
-  public void testSofaDataStream() throws Exception {
-    try {
-
-      // Create Sofas
-      // Create a local Sofa and set string feature
-      // SofaID_impl id = new SofaID_impl();
-      // id.setSofaID("StringSofaData");
-      // SofaFS strSofa = cas.createSofa(id, "text");
-      // strSofa.setLocalSofaData("this beer is good");
-      CAS stringView =this.cas.createView("StringSofaData");
-      stringView.setDocumentText("this beer is good");
-
-      // create a int array fs
-      IntArrayFS intArrayFS =this.cas.createIntArrayFS(5);
-      intArrayFS.set(0, 1);
-      intArrayFS.set(1, 2);
-      intArrayFS.set(2, 3);
-      intArrayFS.set(3, 4);
-      intArrayFS.set(4, 5);
-      // create a Sofa and set the SofaArray feature to an int array FS.
-      // id = new SofaID_impl();
-      // id.setSofaID("intArraySofaData");
-      // SofaFS intarraySofaFS = cas.createSofa(id, "text");
-      // intarraySofaFS.setLocalSofaData(intArrayFS);
-      CAS intArrayView =this.cas.createView("intArraySofaData");
-      intArrayView.setSofaDataArray(intArrayFS, "integers");
-
-      // create a float array fs
-      FloatArrayFS floatArrayFS =this.cas.createFloatArrayFS(5);
-      floatArrayFS.set(0, (float) 0.1);
-      floatArrayFS.set(1, (float) 0.2);
-      floatArrayFS.set(2, (float) 0.3);
-      floatArrayFS.set(3, (float) 0.4);
-      floatArrayFS.set(4, (float) 0.5);
-      // create a sofa and set the SofaArray feature to the float array
-      // id = new SofaID_impl();
-      // id.setSofaID("floatArraySofaData");
-      // SofaFS floatarraySofaFS = cas.createSofa(id,"text");
-      // floatarraySofaFS.setLocalSofaData(floatArrayFS);
-      CAS floatArrayView =this.cas.createView("floatArraySofaData");
-      floatArrayView.setSofaDataArray(floatArrayFS, "floats");
-
-      // create a short array fs
-      ShortArrayFS shortArrayFS =this.cas.createShortArrayFS(5);
-      shortArrayFS.set(0, (short) 128);
-      shortArrayFS.set(1, (short) 127);
-      shortArrayFS.set(2, (short) 126);
-      shortArrayFS.set(3, (short) 125);
-      shortArrayFS.set(4, (short) 124);
-      // create a Sofa and set the SofaArray feature to an int array FS.
-      // id = new SofaID_impl();
-      // id.setSofaID("shortArraySofaData");
-      // SofaFS shortarraySofaFS = cas.createSofa(id, "text");
-      // shortarraySofaFS.setLocalSofaData(shortArrayFS);
-      CAS shortArrayView =this.cas.createView("shortArraySofaData");
-      shortArrayView.setSofaDataArray(shortArrayFS, "shorts");
-
-      // create a byte array fs
-      ByteArrayFS byteArrayFS =this.cas.createByteArrayFS(5);
-      byteArrayFS.set(0, (byte) 8);
-      byteArrayFS.set(1, (byte) 16);
-      byteArrayFS.set(2, (byte) 64);
-      byteArrayFS.set(3, (byte) 128);
-      byteArrayFS.set(4, (byte) 255);
-      // create a Sofa and set the SofaArray feature.
-      // id = new SofaID_impl();
-      // id.setSofaID("byteArraySofaData");
-      // SofaFS bytearraySofaFS = cas.createSofa(id, "text");
-      // bytearraySofaFS.setLocalSofaData(byteArrayFS);
-      CAS byteArrayView =this.cas.createView("byteArraySofaData");
-      byteArrayView.setSofaDataArray(byteArrayFS, "bytes");
-
-      // create a long array fs
-      LongArrayFS longArrayFS =this.cas.createLongArrayFS(5);
-      longArrayFS.set(0, Long.MAX_VALUE);
-      longArrayFS.set(1, Long.MAX_VALUE - 1);
-      longArrayFS.set(2, Long.MAX_VALUE - 2);
-      longArrayFS.set(3, Long.MAX_VALUE - 3);
-      longArrayFS.set(4, Long.MAX_VALUE - 4);
-      // create a Sofa and set the SofaArray feature.
-      // id = new SofaID_impl();
-      // id.setSofaID("longArraySofaData");
-      // SofaFS longarraySofaFS = cas.createSofa(id, "text");
-      // longarraySofaFS.setLocalSofaData(longArrayFS);
-      CAS longArrayView =this.cas.createView("longArraySofaData");
-      longArrayView.setSofaDataArray(longArrayFS, "longs");
-
-      DoubleArrayFS doubleArrayFS =this.cas.createDoubleArrayFS(5);
-      doubleArrayFS.set(0, Double.MAX_VALUE);
-      doubleArrayFS.set(1, Double.MIN_VALUE);
-      doubleArrayFS.set(2, Double.parseDouble("1.5555"));
-      doubleArrayFS.set(3, Double.parseDouble("99.000000005"));
-      doubleArrayFS.set(4, Double.parseDouble("4.44444444444444444"));
-      // create a Sofa and set the SofaArray feature.
-      // id = new SofaID_impl();
-      // id.setSofaID("doubleArraySofaData");
-      // SofaFS doublearraySofaFS = cas.createSofa(id, "text");
-      // doublearraySofaFS.setLocalSofaData(doubleArrayFS);
-      CAS doubleArrayView =this.cas.createView("doubleArraySofaData");
-      doubleArrayView.setSofaDataArray(doubleArrayFS, "doubles");
-
-      // create remote sofa and set the SofaURI feature
-      // id = new SofaID_impl();
-      // id.setSofaID("remoteSofaData");
-      // SofaFS remoteSofa = cas.createSofa(id, "text");
-      // remoteSofa.setRemoteSofaURI("file:.\\Sofa.xcas");
-      CAS remoteView =this.cas.createView("remoteSofaData");
-      String sofaFileName = "./Sofa.xcas";
-      remoteView.setSofaDataURI("file:" + sofaFileName, "text");
-
-      // read sofa data
-      // InputStream is = strSofa.getSofaDataStream();
-      InputStream is = stringView.getSofaDataStream();
-      assertTrue(is != null);
-      byte[] dest = new byte[1];
-      StringBuffer buf = new StringBuffer();
-      while (is.read(dest) != -1) {
-        buf.append((char) dest[0]);
-      }
-      assertTrue(buf.toString().equals("this beer is good"));
-
-      dest = new byte[4];
-      // is = intarraySofaFS.getSofaDataStream();
-      is.close();
-      is = intArrayView.getSofaDataStream();
-      assertTrue(is != null);
-      int i = 0;
-      while (is.read(dest) != -1) {
-        assertTrue(ByteBuffer.wrap(dest).getInt() == intArrayFS.get(i++));
-      }
-
-      // is = floatarraySofaFS.getSofaDataStream();
-      is.close();
-      is = floatArrayView.getSofaDataStream();
-      assertTrue(is != null);
-      i = 0;
-      while (is.read(dest) != -1) {
-        assertTrue(ByteBuffer.wrap(dest).getFloat() == floatArrayFS.get(i++));
-      }
-
-      dest = new byte[2];
-      // is = shortarraySofaFS.getSofaDataStream();
-      is.close();
-      is = shortArrayView.getSofaDataStream();
-      assertTrue(is != null);
-      i = 0;
-      while (is.read(dest) != -1) {
-        assertTrue(ByteBuffer.wrap(dest).getShort() == shortArrayFS.get(i++));
-      }
-
-      dest = new byte[1];
-      // is = bytearraySofaFS.getSofaDataStream();
-      is.close();
-      is = byteArrayView.getSofaDataStream();
-      assertTrue(is != null);
-      i = 0;
-      while (is.read(dest) != -1) {
-        assertTrue(ByteBuffer.wrap(dest).get() == byteArrayFS.get(i++));
-      }
-
-      dest = new byte[8];
-      // is = longarraySofaFS.getSofaDataStream();
-      is.close();
-      is = longArrayView.getSofaDataStream();
-      assertTrue(is != null);
-      i = 0;
-      while (is.read(dest) != -1) {
-        assertTrue(ByteBuffer.wrap(dest).getLong() == longArrayFS.get(i++));
-      }
-
-      // is = doublearraySofaFS.getSofaDataStream();
-      is.close();
-      is = doubleArrayView.getSofaDataStream();
-      assertTrue(is != null);
-      i = 0;
-      while (is.read(dest) != -1) {
-        assertTrue(ByteBuffer.wrap(dest).getDouble() == doubleArrayFS.get(i++));
-      }
-
-      dest = new byte[1];
-      // is = remoteSofa.getSofaDataStream();
-      is = remoteView.getSofaDataStream();
-      assertTrue(is != null);
-
-      is.close();
-      // Delete the generated file.
-      File xcasFile = new File(sofaFileName);
-      if (xcasFile.exists()) {
-        assertTrue(xcasFile.delete());
-      }
-
-    } catch (Exception e) {
-      JUnitExtension.handleException(e);
-    }
-  }
-  
-  public void testSetSofaDataString() {
-    final String TEST_TEXT = "this is a test";
-    final String TEST_MIME = "text/plain";
-    CAS testView = this.cas.createView("TestView");
-    testView.setSofaDataString(TEST_TEXT, TEST_MIME);
-    assertEquals(TEST_TEXT, testView.getSofa().getLocalStringData());
-    assertEquals(TEST_MIME, testView.getSofa().getSofaMime());
-    assertEquals(TEST_TEXT, testView.getSofaDataString());
-  }
-  
-  public void testSetSofaDataStringOnInitialView() {
-    final String TEST_TEXT = "this is a test";
-    final String TEST_MIME = "text/plain";
-    this.cas.setSofaDataString(TEST_TEXT, TEST_MIME);
-    assertEquals(TEST_TEXT, this.cas.getSofa().getLocalStringData());
-    assertEquals(TEST_MIME, this.cas.getSofa().getSofaMime());
-    assertEquals(TEST_TEXT, this.cas.getSofaDataString());
-  }
-
-  public void testSetSofaDataURI() {
-    final String TEST_URI = "file:/test";
-    final String TEST_MIME = "text/plain";
-    CAS testView = this.cas.createView("TestView");
-    testView.setSofaDataURI(TEST_URI, TEST_MIME);
-    assertEquals(TEST_URI, testView.getSofa().getSofaURI());
-    assertEquals(TEST_MIME, testView.getSofa().getSofaMime());
-  }
-  
-  public void testSetSofaDataURIonInitialView() throws Exception {
-    String someText="remote text.";
-    String someTextFile="./someUriText.txt";
-    FileWriter output = new FileWriter(someTextFile);
-    output.write(someText);
-    output.close();
-
-    final String TEST_URI = "file:" + someTextFile;
-    final String TEST_MIME = "text/plain";
-    this.cas.setSofaDataURI(TEST_URI, TEST_MIME);
-    assertEquals(TEST_URI, this.cas.getSofa().getSofaURI());
-    assertEquals(TEST_MIME, this.cas.getSofa().getSofaMime());
-    
-    InputStream is = this.cas.getSofaDataStream();
-    assertTrue(is != null);
-    byte[] dest = new byte[1];
-    StringBuffer buf = new StringBuffer();
-    while (is.read(dest) != -1) {
-      buf.append((char) dest[0]);
-    }
-    is.close();
-    assertTrue(buf.toString().equals(someText));
-    File testFile = new File(someTextFile);
-    assertTrue(testFile.delete());
-  }
-  
-  public void testSetSofaDataArray() {
-    final String TEST_MIME = "text/plain";    
-    CAS testView = this.cas.createView("TestView");
-    ByteArrayFS sofaDataArray = testView.createByteArrayFS(2);
-    sofaDataArray.set(0, (byte)0);
-    sofaDataArray.set(1, (byte)42);
-    testView.setSofaDataArray(sofaDataArray, TEST_MIME);
-    assertEquals(sofaDataArray, testView.getSofa().getLocalFSData());
-    assertEquals(TEST_MIME, testView.getSofa().getSofaMime());
-  }
-  
-  public void testSetSofaDataArrayOnInitialView() {
-    final String TEST_MIME = "text/plain";    
-    ByteArrayFS sofaDataArray = this.cas.createByteArrayFS(2);
-    sofaDataArray.set(0, (byte)0);
-    sofaDataArray.set(1, (byte)42);
-    this.cas.setSofaDataArray(sofaDataArray, TEST_MIME);
-    assertEquals(sofaDataArray, this.cas.getSofa().getLocalFSData());
-    assertEquals(TEST_MIME, this.cas.getSofa().getSofaMime());
-  }
-  
-  public void testReset() {
-    this.cas.reset();
-    this.cas.setDocumentText("setDocumentText creates the _InitialView Sofa");
-    CAS testView = this.cas.createView("TestView");
-    testView.setDocumentText("create a 2nd Sofa");
-    assertTrue( this.cas.getViewName().equals("_InitialView"));
-    assertTrue( testView.getViewName().equals("TestView"));
-    
-    this.cas.reset();
-    SofaID_impl id = new SofaID_impl();
-    id.setSofaID("TestView");
-    SofaFS testSofa = this.cas.createSofa(id, "text");
-    CAS newView = this.cas.getView(testSofa);
-    assertTrue( newView.getViewName().equals("TestView"));
-  }
-  
-  public void testGetViewIterator() throws Exception {
-    this.cas.reset();
-    CAS view1 = this.cas.createView("View1");
-    CAS view2 = this.cas.createView("View2");
-    Iterator iter = this.cas.getViewIterator();
-    assertEquals(this.cas, iter.next());
-    assertEquals(view1, iter.next());
-    assertEquals(view2, iter.next());
-    assertFalse(iter.hasNext());
-    
-    CAS viewE1 = this.cas.createView("EnglishDocument");
-    CAS viewE2 = this.cas.createView("EnglishDocument.2");
-    iter = this.cas.getViewIterator("EnglishDocument");
-    assertEquals(viewE1, iter.next());
-    assertEquals(viewE2, iter.next());
-    assertFalse(iter.hasNext());
-    
-    //try with Sofa mappings
-    UimaContextAdmin rootCtxt = UIMAFramework.newUimaContext(
-            UIMAFramework.getLogger(), UIMAFramework.newDefaultResourceManager(),
-            UIMAFramework.newConfigurationManager());
-    Map sofamap = new HashMap();
-    sofamap.put("SourceDocument","EnglishDocument");
-    UimaContextAdmin childCtxt = rootCtxt.createChild("test", sofamap);
-    cas.setCurrentComponentInfo(childCtxt.getComponentInfo());
-    iter = this.cas.getViewIterator("SourceDocument");
-    assertEquals(viewE1, iter.next());
-    assertEquals(viewE2, iter.next());
-    assertFalse(iter.hasNext());  
-    this.cas.setCurrentComponentInfo(null);
-    
-    //repeat with JCas
-    this.cas.reset();
-    JCas jcas = this.cas.getJCas();
-    JCas jview1 = jcas.createView("View1");
-    JCas jview2 = jcas.createView("View2");
-    iter = jcas.getViewIterator();
-    assertEquals(jcas, iter.next());
-    assertEquals(jview1, iter.next());
-    assertEquals(jview2, iter.next());
-    assertFalse(iter.hasNext());
-    
-    JCas jviewE1 = jcas.createView("EnglishDocument");
-    JCas jviewE2 = jcas.createView("EnglishDocument.2");
-    iter = jcas.getViewIterator("EnglishDocument");
-    assertEquals(jviewE1, iter.next());
-    assertEquals(jviewE2, iter.next());
-    assertFalse(iter.hasNext());
-    
-    //try with Sofa mappings
-    cas.setCurrentComponentInfo(childCtxt.getComponentInfo());
-    iter = jcas.getViewIterator("SourceDocument");
-    assertEquals(jviewE1, iter.next());
-    assertEquals(jviewE2, iter.next());
-    assertFalse(iter.hasNext());  
-    this.cas.setCurrentComponentInfo(null);
-  }
-  
-  public static void main(String[] args) {
-    junit.textui.TestRunner.run(SofaTest.class);
-  }
-
-}
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.cas.test;
+
+import java.io.ByteArrayInputStream;
+import java.io.ByteArrayOutputStream;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileOutputStream;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+import java.nio.ByteBuffer;
+import java.util.HashMap;
+import java.util.Iterator;
+import java.util.Map;
+import java.util.StringTokenizer;
+
+import junit.framework.TestCase;
+
+import org.apache.uima.UIMAFramework;
+import org.apache.uima.UimaContextAdmin;
+import org.apache.uima.cas.ArrayFS;
+import org.apache.uima.cas.ByteArrayFS;
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.DoubleArrayFS;
+import org.apache.uima.cas.FSIndex;
+import org.apache.uima.cas.FSIterator;
+import org.apache.uima.cas.Feature;
+import org.apache.uima.cas.FloatArrayFS;
+import org.apache.uima.cas.IntArrayFS;
+import org.apache.uima.cas.LongArrayFS;
+import org.apache.uima.cas.ShortArrayFS;
+import org.apache.uima.cas.SofaFS;
+import org.apache.uima.cas.Type;
+import org.apache.uima.cas.admin.CASFactory;
+import org.apache.uima.cas.admin.CASMgr;
+import org.apache.uima.cas.admin.FSIndexRepositoryMgr;
+import org.apache.uima.cas.admin.TypeSystemMgr;
+import org.apache.uima.cas.impl.CASImpl;
+import org.apache.uima.cas.impl.CASSerializer;
+import org.apache.uima.cas.impl.Serialization;
+import org.apache.uima.cas.impl.XCASDeserializer;
+import org.apache.uima.cas.impl.XCASSerializer;
+import org.apache.uima.cas.text.AnnotationFS;
+import org.apache.uima.impl.SofaID_impl;
+import org.apache.uima.jcas.JCas;
+import org.apache.uima.resource.metadata.TypeSystemDescription;
+import org.apache.uima.test.junit_extension.JUnitExtension;
+import org.apache.uima.util.CasCreationUtils;
+import org.apache.uima.util.XMLSerializer;
+import org.xml.sax.SAXException;
+
+
+public class SofaTest extends TestCase {
+
+  private CASMgr casMgr;
+
+  private CAS cas;
+
+  private Type annotationType;
+
+  private Type docAnnotationType;
+
+  private Type crossType;
+
+  private Feature otherFeat;
+
+//  private Feature annotSofaFeat;
+
+  public SofaTest(String arg) {
+    super(arg);
+  }
+
+  /**
+   * @see junit.framework.TestCase#setUp()
+   */
+  protected void setUp() throws Exception {
+    try {
+      super.setUp();
+      this.casMgr = CASFactory.createCAS();
+      CasCreationUtils.setupTypeSystem(this.casMgr, (TypeSystemDescription) null);
+      // Create a writable type system.
+      TypeSystemMgr tsa = this.casMgr.getTypeSystemMgr();
+      // Add new types and features.
+      // Type topType = tsa.getTopType();
+      this.annotationType = tsa.getType(CAS.TYPE_NAME_ANNOTATION);
+//      annotSofaFeat = annotationType.getFeatureByBaseName(CAS.FEATURE_BASE_NAME_SOFA);
+      this.docAnnotationType = tsa.getType(CAS.TYPE_NAME_DOCUMENT_ANNOTATION);
+      assertTrue(this.annotationType != null);
+      this.crossType = tsa.addType("sofa.test.CrossAnnotation", this.annotationType);
+      this.otherFeat = tsa.addFeature("otherAnnotation", this.crossType, this.annotationType);
+      // Commit the type system.
+      ((CASImpl) this.casMgr).commitTypeSystem();
+
+      // Create the Base indexes.
+      this.casMgr.initCASIndexes();
+      FSIndexRepositoryMgr irm = this.casMgr.getIndexRepositoryMgr();
+      // init.initIndexes(irm, casMgr.getTypeSystemMgr());
+      irm.commit();
+
+      this.cas = this.casMgr.getCAS().getView(CAS.NAME_DEFAULT_SOFA);
+      assertTrue(this.cas.getSofa() == null);
+      assertTrue(this.cas.getViewName().equals(CAS.NAME_DEFAULT_SOFA));
+    } catch (Exception e) {
+      JUnitExtension.handleException(e);
+    }
+
+  }
+
+  /**
+   * Test driver.
+   */
+  public void testMain() throws Exception {
+    try {
+
+      // Create a Sofa (using old APIs for now)
+      SofaID_impl id = new SofaID_impl();
+      id.setSofaID("EnglishDocument");
+      SofaFS es = this.cas.createSofa(id, "text");
+      // Initial View is #1!!!
+      assertTrue(2 == es.getSofaRef());
+
+      // Set the document text
+      es.setLocalSofaData("this beer is good");
+
+      // Test Multiple Sofas across XCAS serialization
+      XCASSerializer ser = new XCASSerializer(this.cas.getTypeSystem());
+      OutputStream outputXCAS = new FileOutputStream("Sofa.xcas");
+      XMLSerializer xmlSer = new XMLSerializer(outputXCAS);
+      try {
+        ser.serialize(cas, xmlSer.getContentHandler());
+        outputXCAS.close();
+      } catch (IOException e) {
+        e.printStackTrace();
+      } catch (SAXException e) {
+        e.printStackTrace();
+      }
+
+      // Deserialize XCAS
+     this.cas.reset();
+      InputStream inputXCAS = new FileInputStream("Sofa.xcas");
+      try {
+        XCASDeserializer.deserialize(inputXCAS, cas, false);
+        inputXCAS.close();
+      } catch (SAXException e2) {
+        e2.printStackTrace();
+      } catch (IOException e2) {
+        e2.printStackTrace();
+      }
+
+      // Add a new Sofa
+      // SofaID_impl gid = new SofaID_impl();
+      // gid.setSofaID("GermanDocument");
+      // SofaFS gs = ((CASImpl)cas).createSofa(gid,"text");
+      CAS gerTcas =this.cas.createView("GermanDocument");
+      assertTrue(gerTcas.getViewName().equals("GermanDocument"));
+      SofaFS gs = gerTcas.getSofa();
+
+      assertTrue(gs != null);
+      assertTrue(3 == gs.getSofaRef());
+
+      // Set the document text
+      // gs.setLocalSofaData("das bier ist gut");
+      gerTcas.setDocumentText("das bier ist gut");
+
+      // Test multiple Sofas across binary serialization
+      CASSerializer cs = Serialization.serializeNoMetaData(cas);
+      cas = Serialization.createCAS(casMgr, cs);
+
+      // Add a new Sofa
+      // SofaID_impl fid = new SofaID_impl();
+      // fid.setSofaID("FrenchDocument");
+      // SofaFS fs = ((CASImpl)cas).createSofa(fid, "text");
+      CAS frT =this.cas.createView("FrenchDocument");
+      assertTrue(frT.getViewName().equals("FrenchDocument"));
+      SofaFS fs = frT.getSofa();
+      assertTrue(fs != null);
+      assertTrue(4 == fs.getSofaRef());
+
+      // Test multiple Sofas across blob serialization
+      ByteArrayOutputStream fos = new ByteArrayOutputStream();
+      Serialization.serializeCAS(cas, fos);
+     this.cas.reset();
+      ByteArrayInputStream fis = new ByteArrayInputStream(fos.toByteArray());
+      Serialization.deserializeCAS(cas, fis);
+
+      // Open TCas views of some Sofas
+      CAS engTcas =this.cas.getView(es);
+      assertTrue(engTcas.getViewName().equals("EnglishDocument"));
+      CAS frTcas =this.cas.getView("FrenchDocument");
+
+      // Set the document text off SofaFS after the CAS view exists
+      frTcas.setSofaDataString("cette biere est bonne", "text");
+
+      // Create standard annotations against one and cross annotations
+      // against the other
+      int engEnd = 0;
+      int gerEnd = 0;
+      int frEnd = 0;
+      String engText = engTcas.getDocumentText();
+      String gerText = gerTcas.getDocumentText();
+      String frText = frTcas.getDocumentText();
+      StringTokenizer est = new StringTokenizer(engText);
+      StringTokenizer gst = new StringTokenizer(gerText);
+      StringTokenizer fst = new StringTokenizer(frText);
+
+      while (est.hasMoreTokens()) {
+        assertTrue(gst.hasMoreTokens());
+        assertTrue(fst.hasMoreTokens());
+
+        String eTok = est.nextToken();
+        int engBegin = engText.indexOf(eTok, engEnd);
+        engEnd = engBegin + eTok.length();
+
+        String gTok = gst.nextToken();
+        int gerBegin = gerText.indexOf(gTok, gerEnd);
+        gerEnd = gerBegin + gTok.length();
+
+        String fTok = fst.nextToken();
+        int frBegin = frText.indexOf(fTok, frEnd);
+        frEnd = frBegin + fTok.length();
+
+        AnnotationFS engAnnot = engTcas.createAnnotation(annotationType, engBegin, engEnd);
+        engTcas.getIndexRepository().addFS(engAnnot);
+
+        AnnotationFS frAnnot = frTcas.createAnnotation(this.annotationType, frBegin, frEnd);
+        frTcas.getIndexRepository().addFS(frAnnot);
+
+        AnnotationFS gerAnnot = gerTcas.createAnnotation(this.crossType, gerBegin, gerEnd);
+        gerAnnot.setFeatureValue(this.otherFeat, engAnnot);
+        gerTcas.getIndexRepository().addFS(gerAnnot);
+      }
+
+      // Test that the annotations are in separate index spaces, and that
+      // Sofas are indexed
+      // FSIndex sofaIndex =
+      // cas.getIndexRepository().getIndex(CAS.SOFA_INDEX_NAME);
+      FSIterator sofaIter =this.cas.getSofaIterator();
+      int numSofas = 0;
+      while (sofaIter.isValid()) {
+        numSofas++;
+        sofaIter.moveToNext();
+      }
+      FSIndex engIndex = engTcas.getAnnotationIndex();
+      FSIndex gerIndex = gerTcas.getAnnotationIndex();
+      FSIndex frIndex = frTcas.getAnnotationIndex();
+      // assertTrue(sofaIndex.size() == 3); // 3 sofas
+      assertTrue(numSofas == 3);
+      assertTrue(engIndex.size() == 5); // 4 annots plus
+      // documentAnnotation
+      assertTrue(gerIndex.size() == 5); // 4 annots plus
+      // documentAnnotation
+      assertTrue(frIndex.size() == 5); // 4 annots plus
+      // documentAnnotation
+
+      // Test that the annotations are of the correct types
+      FSIterator engIt = engIndex.iterator();
+      FSIterator gerIt = gerIndex.iterator();
+      FSIterator frIt = frIndex.iterator();
+      AnnotationFS engAnnot = (AnnotationFS) engIt.get();
+      AnnotationFS gerAnnot = (AnnotationFS) gerIt.get();
+      AnnotationFS frAnnot = (AnnotationFS) frIt.get();
+      assertTrue(docAnnotationType.getName().equals(engAnnot.getType().getName()));
+      assertTrue(docAnnotationType.getName().equals(gerAnnot.getType().getName()));
+      assertTrue(docAnnotationType.getName().equals(frAnnot.getType().getName()));
+
+      engIt.moveToNext();
+      gerIt.moveToNext();
+      frIt.moveToNext();
+      engAnnot = (AnnotationFS) engIt.get();
+      gerAnnot = (AnnotationFS) gerIt.get();
+      frAnnot = (AnnotationFS) frIt.get();
+      assertTrue(annotationType.getName().equals(engAnnot.getType().getName()));
+      assertTrue(("this").equals(engAnnot.getCoveredText()));
+      assertTrue(annotationType.getName().equals(frAnnot.getType().getName()));
+      assertTrue(("cette").equals(frAnnot.getCoveredText()));
+      assertTrue(crossType.getName().equals(gerAnnot.getType().getName()));
+      assertTrue(("das").equals(gerAnnot.getCoveredText()));
+
+      // Test that the other annotation feature of cross annotations works
+      AnnotationFS crossAnnot = (AnnotationFS) gerAnnot.getFeatureValue(otherFeat);
+      assertTrue(annotationType.getName().equals(crossAnnot.getType().getName()));
+      assertTrue(("this").equals(crossAnnot.getCoveredText()));
+     
+      //Test equals method for same annotation obtained through different views
+      assertEquals(engAnnot, crossAnnot);
+      
+      // Test that annotations accessed from a reference in the base CAS
+      // work correctly
+      ArrayFS anArray =this.cas.createArrayFS(3);
+      anArray.set(0, engAnnot);
+      anArray.set(1, frAnnot);
+      anArray.set(2, gerAnnot);
+      AnnotationFS tstAnnot = (AnnotationFS) anArray.get(0);
+      assertTrue(("this").equals(tstAnnot.getCoveredText()));
+      tstAnnot = (AnnotationFS) anArray.get(1);
+      assertTrue(("cette").equals(tstAnnot.getCoveredText()));
+      tstAnnot = (AnnotationFS) anArray.get(2);
+      assertTrue(("das").equals(tstAnnot.getCoveredText()));
+    } catch (Exception e) {
+      JUnitExtension.handleException(e);
+    }
+
+  }
+
+  /**
+   * Test stream access to Sofa Data.
+   * 
+   * @throws Exception
+   */
+  public void testSofaDataStream() throws Exception {
+    try {
+
+      // Create Sofas
+      // Create a local Sofa and set string feature
+      // SofaID_impl id = new SofaID_impl();
+      // id.setSofaID("StringSofaData");
+      // SofaFS strSofa = cas.createSofa(id, "text");
+      // strSofa.setLocalSofaData("this beer is good");
+      CAS stringView =this.cas.createView("StringSofaData");
+      stringView.setDocumentText("this beer is good");
+
+      // create a int array fs
+      IntArrayFS intArrayFS =this.cas.createIntArrayFS(5);
+      intArrayFS.set(0, 1);
+      intArrayFS.set(1, 2);
+      intArrayFS.set(2, 3);
+      intArrayFS.set(3, 4);
+      intArrayFS.set(4, 5);
+      // create a Sofa and set the SofaArray feature to an int array FS.
+      // id = new SofaID_impl();
+      // id.setSofaID("intArraySofaData");
+      // SofaFS intarraySofaFS = cas.createSofa(id, "text");
+      // intarraySofaFS.setLocalSofaData(intArrayFS);
+      CAS intArrayView =this.cas.createView("intArraySofaData");
+      intArrayView.setSofaDataArray(intArrayFS, "integers");
+
+      // create a float array fs
+      FloatArrayFS floatArrayFS =this.cas.createFloatArrayFS(5);
+      floatArrayFS.set(0, (float) 0.1);
+      floatArrayFS.set(1, (float) 0.2);
+      floatArrayFS.set(2, (float) 0.3);
+      floatArrayFS.set(3, (float) 0.4);
+      floatArrayFS.set(4, (float) 0.5);
+      // create a sofa and set the SofaArray feature to the float array
+      // id = new SofaID_impl();
+      // id.setSofaID("floatArraySofaData");
+      // SofaFS floatarraySofaFS = cas.createSofa(id,"text");
+      // floatarraySofaFS.setLocalSofaData(floatArrayFS);
+      CAS floatArrayView =this.cas.createView("floatArraySofaData");
+      floatArrayView.setSofaDataArray(floatArrayFS, "floats");
+
+      // create a short array fs
+      ShortArrayFS shortArrayFS =this.cas.createShortArrayFS(5);
+      shortArrayFS.set(0, (short) 128);
+      shortArrayFS.set(1, (short) 127);
+      shortArrayFS.set(2, (short) 126);
+      shortArrayFS.set(3, (short) 125);
+      shortArrayFS.set(4, (short) 124);
+      // create a Sofa and set the SofaArray feature to an int array FS.
+      // id = new SofaID_impl();
+      // id.setSofaID("shortArraySofaData");
+      // SofaFS shortarraySofaFS = cas.createSofa(id, "text");
+      // shortarraySofaFS.setLocalSofaData(shortArrayFS);
+      CAS shortArrayView =this.cas.createView("shortArraySofaData");
+      shortArrayView.setSofaDataArray(shortArrayFS, "shorts");
+
+      // create a byte array fs
+      ByteArrayFS byteArrayFS =this.cas.createByteArrayFS(5);
+      byteArrayFS.set(0, (byte) 8);
+      byteArrayFS.set(1, (byte) 16);
+      byteArrayFS.set(2, (byte) 64);
+      byteArrayFS.set(3, (byte) 128);
+      byteArrayFS.set(4, (byte) 255);
+      // create a Sofa and set the SofaArray feature.
+      // id = new SofaID_impl();
+      // id.setSofaID("byteArraySofaData");
+      // SofaFS bytearraySofaFS = cas.createSofa(id, "text");
+      // bytearraySofaFS.setLocalSofaData(byteArrayFS);
+      CAS byteArrayView =this.cas.createView("byteArraySofaData");
+      byteArrayView.setSofaDataArray(byteArrayFS, "bytes");
+
+      // create a long array fs
+      LongArrayFS longArrayFS =this.cas.createLongArrayFS(5);
+      longArrayFS.set(0, Long.MAX_VALUE);
+      longArrayFS.set(1, Long.MAX_VALUE - 1);
+      longArrayFS.set(2, Long.MAX_VALUE - 2);
+      longArrayFS.set(3, Long.MAX_VALUE - 3);
+      longArrayFS.set(4, Long.MAX_VALUE - 4);
+      // create a Sofa and set the SofaArray feature.
+      // id = new SofaID_impl();
+      // id.setSofaID("longArraySofaData");
+      // SofaFS longarraySofaFS = cas.createSofa(id, "text");
+      // longarraySofaFS.setLocalSofaData(longArrayFS);
+      CAS longArrayView =this.cas.createView("longArraySofaData");
+      longArrayView.setSofaDataArray(longArrayFS, "longs");
+
+      DoubleArrayFS doubleArrayFS =this.cas.createDoubleArrayFS(5);
+      doubleArrayFS.set(0, Double.MAX_VALUE);
+      doubleArrayFS.set(1, Double.MIN_VALUE);
+      doubleArrayFS.set(2, Double.parseDouble("1.5555"));
+      doubleArrayFS.set(3, Double.parseDouble("99.000000005"));
+      doubleArrayFS.set(4, Double.parseDouble("4.44444444444444444"));
+      // create a Sofa and set the SofaArray feature.
+      // id = new SofaID_impl();
+      // id.setSofaID("doubleArraySofaData");
+      // SofaFS doublearraySofaFS = cas.createSofa(id, "text");
+      // doublearraySofaFS.setLocalSofaData(doubleArrayFS);
+      CAS doubleArrayView =this.cas.createView("doubleArraySofaData");
+      doubleArrayView.setSofaDataArray(doubleArrayFS, "doubles");
+
+      // create remote sofa and set the SofaURI feature
+      // id = new SofaID_impl();
+      // id.setSofaID("remoteSofaData");
+      // SofaFS remoteSofa = cas.createSofa(id, "text");
+      // remoteSofa.setRemoteSofaURI("file:.\\Sofa.xcas");
+      CAS remoteView =this.cas.createView("remoteSofaData");
+      String sofaFileName = "./Sofa.xcas";
+      remoteView.setSofaDataURI("file:" + sofaFileName, "text");
+
+      // read sofa data
+      // InputStream is = strSofa.getSofaDataStream();
+      InputStream is = stringView.getSofaDataStream();
+      assertTrue(is != null);
+      byte[] dest = new byte[1];
+      StringBuffer buf = new StringBuffer();
+      while (is.read(dest) != -1) {
+        buf.append((char) dest[0]);
+      }
+      assertTrue(buf.toString().equals("this beer is good"));
+
+      dest = new byte[4];
+      // is = intarraySofaFS.getSofaDataStream();
+      is.close();
+      is = intArrayView.getSofaDataStream();
+      assertTrue(is != null);
+      int i = 0;
+      while (is.read(dest) != -1) {
+        assertTrue(ByteBuffer.wrap(dest).getInt() == intArrayFS.get(i++));
+      }
+
+      // is = floatarraySofaFS.getSofaDataStream();
+      is.close();
+      is = floatArrayView.getSofaDataStream();
+      assertTrue(is != null);
+      i = 0;
+      while (is.read(dest) != -1) {
+        assertTrue(ByteBuffer.wrap(dest).getFloat() == floatArrayFS.get(i++));
+      }
+
+      dest = new byte[2];
+      // is = shortarraySofaFS.getSofaDataStream();
+      is.close();
+      is = shortArrayView.getSofaDataStream();
+      assertTrue(is != null);
+      i = 0;
+      while (is.read(dest) != -1) {
+        assertTrue(ByteBuffer.wrap(dest).getShort() == shortArrayFS.get(i++));
+      }
+
+      dest = new byte[1];
+      // is = bytearraySofaFS.getSofaDataStream();
+      is.close();
+      is = byteArrayView.getSofaDataStream();
+      assertTrue(is != null);
+      i = 0;
+      while (is.read(dest) != -1) {
+        assertTrue(ByteBuffer.wrap(dest).get() == byteArrayFS.get(i++));
+      }
+
+      dest = new byte[8];
+      // is = longarraySofaFS.getSofaDataStream();
+      is.close();
+      is = longArrayView.getSofaDataStream();
+      assertTrue(is != null);
+      i = 0;
+      while (is.read(dest) != -1) {
+        assertTrue(ByteBuffer.wrap(dest).getLong() == longArrayFS.get(i++));
+      }
+
+      // is = doublearraySofaFS.getSofaDataStream();
+      is.close();
+      is = doubleArrayView.getSofaDataStream();
+      assertTrue(is != null);
+      i = 0;
+      while (is.read(dest) != -1) {
+        assertTrue(ByteBuffer.wrap(dest).getDouble() == doubleArrayFS.get(i++));
+      }
+
+      dest = new byte[1];
+      // is = remoteSofa.getSofaDataStream();
+      is = remoteView.getSofaDataStream();
+      assertTrue(is != null);
+
+      is.close();
+      // Delete the generated file.
+      File xcasFile = new File(sofaFileName);
+      if (xcasFile.exists()) {
+        assertTrue(xcasFile.delete());
+      }
+
+    } catch (Exception e) {
+      JUnitExtension.handleException(e);
+    }
+  }
+  
+  public void testSetSofaDataString() {
+    final String TEST_TEXT = "this is a test";
+    final String TEST_MIME = "text/plain";
+    CAS testView = this.cas.createView("TestView");
+    testView.setSofaDataString(TEST_TEXT, TEST_MIME);
+    assertEquals(TEST_TEXT, testView.getSofa().getLocalStringData());
+    assertEquals(TEST_MIME, testView.getSofa().getSofaMime());
+    assertEquals(TEST_TEXT, testView.getSofaDataString());
+  }
+  
+  public void testSetSofaDataStringOnInitialView() {
+    final String TEST_TEXT = "this is a test";
+    final String TEST_MIME = "text/plain";
+    this.cas.setSofaDataString(TEST_TEXT, TEST_MIME);
+    assertEquals(TEST_TEXT, this.cas.getSofa().getLocalStringData());
+    assertEquals(TEST_MIME, this.cas.getSofa().getSofaMime());
+    assertEquals(TEST_TEXT, this.cas.getSofaDataString());
+  }
+
+  public void testSetSofaDataURI() {
+    final String TEST_URI = "file:/test";
+    final String TEST_MIME = "text/plain";
+    CAS testView = this.cas.createView("TestView");
+    testView.setSofaDataURI(TEST_URI, TEST_MIME);
+    assertEquals(TEST_URI, testView.getSofa().getSofaURI());
+    assertEquals(TEST_MIME, testView.getSofa().getSofaMime());
+  }
+  
+  public void testSetSofaDataURIonInitialView() throws Exception {
+    String someText="remote text.";
+    String someTextFile="./someUriText.txt";
+    FileWriter output = new FileWriter(someTextFile);
+    output.write(someText);
+    output.close();
+
+    final String TEST_URI = "file:" + someTextFile;
+    final String TEST_MIME = "text/plain";
+    this.cas.setSofaDataURI(TEST_URI, TEST_MIME);
+    assertEquals(TEST_URI, this.cas.getSofa().getSofaURI());
+    assertEquals(TEST_MIME, this.cas.getSofa().getSofaMime());
+    
+    InputStream is = this.cas.getSofaDataStream();
+    assertTrue(is != null);
+    byte[] dest = new byte[1];
+    StringBuffer buf = new StringBuffer();
+    while (is.read(dest) != -1) {
+      buf.append((char) dest[0]);
+    }
+    is.close();
+    assertTrue(buf.toString().equals(someText));
+    File testFile = new File(someTextFile);
+    assertTrue(testFile.delete());
+  }
+  
+  public void testSetSofaDataArray() {
+    final String TEST_MIME = "text/plain";    
+    CAS testView = this.cas.createView("TestView");
+    ByteArrayFS sofaDataArray = testView.createByteArrayFS(2);
+    sofaDataArray.set(0, (byte)0);
+    sofaDataArray.set(1, (byte)42);
+    testView.setSofaDataArray(sofaDataArray, TEST_MIME);
+    assertEquals(sofaDataArray, testView.getSofa().getLocalFSData());
+    assertEquals(TEST_MIME, testView.getSofa().getSofaMime());
+  }
+  
+  public void testSetSofaDataArrayOnInitialView() {
+    final String TEST_MIME = "text/plain";    
+    ByteArrayFS sofaDataArray = this.cas.createByteArrayFS(2);
+    sofaDataArray.set(0, (byte)0);
+    sofaDataArray.set(1, (byte)42);
+    this.cas.setSofaDataArray(sofaDataArray, TEST_MIME);
+    assertEquals(sofaDataArray, this.cas.getSofa().getLocalFSData());
+    assertEquals(TEST_MIME, this.cas.getSofa().getSofaMime());
+  }
+  
+  public void testReset() {
+    this.cas.reset();
+    this.cas.setDocumentText("setDocumentText creates the _InitialView Sofa");
+    CAS testView = this.cas.createView("TestView");
+    testView.setDocumentText("create a 2nd Sofa");
+    assertTrue( this.cas.getViewName().equals("_InitialView"));
+    assertTrue( testView.getViewName().equals("TestView"));
+    
+    this.cas.reset();
+    SofaID_impl id = new SofaID_impl();
+    id.setSofaID("TestView");
+    SofaFS testSofa = this.cas.createSofa(id, "text");
+    CAS newView = this.cas.getView(testSofa);
+    assertTrue( newView.getViewName().equals("TestView"));
+  }
+  
+  public void testGetViewIterator() throws Exception {
+    this.cas.reset();
+    CAS view1 = this.cas.createView("View1");
+    CAS view2 = this.cas.createView("View2");
+    Iterator iter = this.cas.getViewIterator();
+    assertEquals(this.cas, iter.next());
+    assertEquals(view1, iter.next());
+    assertEquals(view2, iter.next());
+    assertFalse(iter.hasNext());
+    
+    CAS viewE1 = this.cas.createView("EnglishDocument");
+    CAS viewE2 = this.cas.createView("EnglishDocument.2");
+    iter = this.cas.getViewIterator("EnglishDocument");
+    assertEquals(viewE1, iter.next());
+    assertEquals(viewE2, iter.next());
+    assertFalse(iter.hasNext());
+    
+    //try with Sofa mappings
+    UimaContextAdmin rootCtxt = UIMAFramework.newUimaContext(
+            UIMAFramework.getLogger(), UIMAFramework.newDefaultResourceManager(),
+            UIMAFramework.newConfigurationManager());
+    Map sofamap = new HashMap();
+    sofamap.put("SourceDocument","EnglishDocument");
+    UimaContextAdmin childCtxt = rootCtxt.createChild("test", sofamap);
+    cas.setCurrentComponentInfo(childCtxt.getComponentInfo());
+    iter = this.cas.getViewIterator("SourceDocument");
+    assertEquals(viewE1, iter.next());
+    assertEquals(viewE2, iter.next());
+    assertFalse(iter.hasNext());  
+    this.cas.setCurrentComponentInfo(null);
+    
+    //repeat with JCas
+    this.cas.reset();
+    JCas jcas = this.cas.getJCas();
+    JCas jview1 = jcas.createView("View1");
+    JCas jview2 = jcas.createView("View2");
+    iter = jcas.getViewIterator();
+    assertEquals(jcas, iter.next());
+    assertEquals(jview1, iter.next());
+    assertEquals(jview2, iter.next());
+    assertFalse(iter.hasNext());
+    
+    JCas jviewE1 = jcas.createView("EnglishDocument");
+    JCas jviewE2 = jcas.createView("EnglishDocument.2");
+    iter = jcas.getViewIterator("EnglishDocument");
+    assertEquals(jviewE1, iter.next());
+    assertEquals(jviewE2, iter.next());
+    assertFalse(iter.hasNext());
+    
+    //try with Sofa mappings
+    cas.setCurrentComponentInfo(childCtxt.getComponentInfo());
+    iter = jcas.getViewIterator("SourceDocument");
+    assertEquals(jviewE1, iter.next());
+    assertEquals(jviewE2, iter.next());
+    assertFalse(iter.hasNext());  
+    this.cas.setCurrentComponentInfo(null);
+  }
+  
+  public static void main(String[] args) {
+    junit.textui.TestRunner.run(SofaTest.class);
+  }
+
+}

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