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Posted to commits@ctakes.apache.org by br...@apache.org on 2013/07/07 21:47:53 UTC
svn commit: r1500524 [1/4] - in /ctakes/sandbox/ctakes-scrubber-deid: csv/
data/ data/input/ data/input/cases/ data/input/cases/test/
data/input/cases/train/ data/input/phi/ data/input/phi/test/
data/input/phi/train/ data/input/pubs/ data/input/pubs/pr...
Author: brittfitch
Date: Sun Jul 7 19:47:51 2013
New Revision: 1500524
URL: http://svn.apache.org/r1500524
Log:
add csv directory used for bulk loading db.
add data directory with test case, train case, test protege knowtator file, and models for train and test.
Added:
ctakes/sandbox/ctakes-scrubber-deid/csv/
ctakes/sandbox/ctakes-scrubber-deid/data/
ctakes/sandbox/ctakes-scrubber-deid/data/input/
ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/
ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/
ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/testcase.xml (with props)
ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/
ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/traincase.xml (with props)
ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/
ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/
ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/testcase.xml.knowtator.xml (with props)
ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/train/
ctakes/sandbox/ctakes-scrubber-deid/data/input/pubs/
ctakes/sandbox/ctakes-scrubber-deid/data/input/pubs/processed/
ctakes/sandbox/ctakes-scrubber-deid/data/input/pubs/txt/
ctakes/sandbox/ctakes-scrubber-deid/data/input/pubs/xml/
ctakes/sandbox/ctakes-scrubber-deid/data/models/
ctakes/sandbox/ctakes-scrubber-deid/data/models/test.arff
ctakes/sandbox/ctakes-scrubber-deid/data/models/train.arff
ctakes/sandbox/ctakes-scrubber-deid/data/models/weka_header.txt (with props)
ctakes/sandbox/ctakes-scrubber-deid/data/models/weka_header_with_crf.txt (with props)
ctakes/sandbox/ctakes-scrubber-deid/data/scrubbed/
ctakes/sandbox/ctakes-scrubber-deid/data/scrubbed/test/
Added: ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/testcase.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/testcase.xml?rev=1500524&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/testcase.xml (added)
+++ ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/testcase.xml Sun Jul 7 19:47:51 2013
@@ -0,0 +1,68 @@
+<Envelope xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="variable.xsd" >
+ <Header>
+ <Identifiers>
+ <FirstName>Doe</FirstName>
+ <LastName>John</LastName>
+ <DateOfBirth>1920-01-01</DateOfBirth>
+ <SSN>123456789</SSN>
+ <AccessionNumber>05-0001D</AccessionNumber>
+ <LocalMRN>7654321</LocalMRN>
+ <Source>ANY</Source>
+ </Identifiers>
+ </Header>
+ <Body>
+ <PathologyCase TissueAcquisitionDate="2005-01-01" >
+ <Codes>
+ <Code Source="UMLS">C0011900</Code>
+ <Code Source="UMLS">C0225317</Code>
+ </Codes>
+ <Clinical>
+ <Patient>
+ <Age Units="years" >92</Age>
+ <Gender>M</Gender>
+ </Patient>
+ </Clinical>
+ <BillingDiagnosis Type="LightMicroscopy" >
+ <Term Code="T1X010" Source="SNOMED" ></Term>
+ <Term Code="M88500" Source="SNOMED" ></Term>
+ </BillingDiagnosis>
+ <Specimen Key="00" Type="Surgical">
+ <SpecimenAcquisitionProcedure>
+ <Term Code="C0011900" Source="UMLS">DIAGNOSIS</Term>
+ </SpecimenAcquisitionProcedure>
+ <Topology>
+ <Term Code="C0225317" Source="UMLS">Soft tissue</Term>
+ </Topology>
+ <Topology>
+ <Term Code="C0040300" Source="UMLS">tissue</Term>
+ </Topology>
+ <Topology>
+ <Term Code="C0003792" Source="UMLS">arm</Term>
+ </Topology>
+ <Diagnosis>
+ <Term Code="C0206632" Source="UMLS">Angiolipomas</Term>
+ </Diagnosis>
+ </Specimen>
+ <Specimen Key="1" >
+ </Specimen>
+ <FullReportText><![CDATA[SPECIMEN SUBMITTED: SKIN ARM X 2.Clinical: None noted. Gross:
+ The specimen was received fresh labeled with "John Doe" and "arm lesion" who is a 92 year old patient "1940-01-01" with 123456789 and 7654321 consists of two fragments of tan soft tissue measuring 1.1 x 1.1 x 1.0 cm and 1.4 x 0.5 x 0.4 cm respectively.
+ The larger lesion is inked in black the smaller lesion is inked in blue, both fragments of 05-0001D are serially sectioned and entirely submitted as follows: A-B = larger fragments, C = smaller fragments.
+ Mr. Smith's specimens were reviewed by Mrs. Jane Doe, M.D. on 2009-02-01.
+ Given .7 mg. of something.
+ Patient may be duplicate with social 018100135. John's possesive test. John Doe-Smith hyphen test.
+ Test: The NG tube was discontinued on August 16th and the patient was increased on August 17th. On August 18th the patient had stable vital signs.
+ Test: Mercy Hospital in Devils Lake, North Dakota.
+
+
+ 04/29/09 Dr. Notarealname DIAGNOSIS: Soft tissue, arm : Lipomas two . Ms. Fake Notarealname, M.D.
+ SPECIMEN SUBMITTED: SKIN ARM X 2. DIAGNOSIS: Soft tissue, arm : Lipomas two . Clinical: None noted. Gross:
+ Patient admitted at 7:30 a.m. Height: 6'01". 11,000. Given 2% milk p.o.b.i.d.
+ Other specimens collected on 1/20/91, 12/01/05, 10/6/66, 8/9/1985.
+ 5+ +K2 +3
+ For more information, call Dr. Peter Venkman at (800) 555-2368.
+ The specimen was received fresh labeled with "John Doe" and "arm lesion" and consists of two fragments of tan soft tissue measuring 1.1 x 1.1 x 1.0 cm and 1.4 x 0.5 x 0.4 cm respectively. The larger lesion is inked in black the smaller lesion is inked in blue, both fragments are serially sectioned and entirely submitted as follows: A-B = larger fragments, C = smaller fragments. 4/29/09]]>
+ </FullReportText>
+ </PathologyCase>
+ </Body>
+</Envelope>
Propchange: ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/test/testcase.xml
------------------------------------------------------------------------------
svn:mime-type = text/plain
Added: ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/traincase.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/traincase.xml?rev=1500524&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/traincase.xml (added)
+++ ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/traincase.xml Sun Jul 7 19:47:51 2013
@@ -0,0 +1,68 @@
+<Envelope xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="variable.xsd" >
+ <Header>
+ <Identifiers>
+ <FirstName>Doe</FirstName>
+ <LastName>John</LastName>
+ <DateOfBirth>1920-01-01</DateOfBirth>
+ <SSN>123456789</SSN>
+ <AccessionNumber>05-0001D</AccessionNumber>
+ <LocalMRN>7654321</LocalMRN>
+ <Source>ANY</Source>
+ </Identifiers>
+ </Header>
+ <Body>
+ <PathologyCase TissueAcquisitionDate="2005-01-01" >
+ <Codes>
+ <Code Source="UMLS">C0011900</Code>
+ <Code Source="UMLS">C0225317</Code>
+ </Codes>
+ <Clinical>
+ <Patient>
+ <Age Units="years" >92</Age>
+ <Gender>M</Gender>
+ </Patient>
+ </Clinical>
+ <BillingDiagnosis Type="LightMicroscopy" >
+ <Term Code="T1X010" Source="SNOMED" ></Term>
+ <Term Code="M88500" Source="SNOMED" ></Term>
+ </BillingDiagnosis>
+ <Specimen Key="00" Type="Surgical">
+ <SpecimenAcquisitionProcedure>
+ <Term Code="C0011900" Source="UMLS">DIAGNOSIS</Term>
+ </SpecimenAcquisitionProcedure>
+ <Topology>
+ <Term Code="C0225317" Source="UMLS">Soft tissue</Term>
+ </Topology>
+ <Topology>
+ <Term Code="C0040300" Source="UMLS">tissue</Term>
+ </Topology>
+ <Topology>
+ <Term Code="C0003792" Source="UMLS">arm</Term>
+ </Topology>
+ <Diagnosis>
+ <Term Code="C0206632" Source="UMLS">Angiolipomas</Term>
+ </Diagnosis>
+ </Specimen>
+ <Specimen Key="1" >
+ </Specimen>
+ <FullReportText><![CDATA[SPECIMEN SUBMITTED: SKIN ARM X 2.Clinical: None noted. Gross:
+ The specimen was received fresh labeled with "John Doe" and "arm lesion" who is a 92 year old patient "1940-01-01" with 123456789 and 7654321 consists of two fragments of tan soft tissue measuring 1.1 x 1.1 x 1.0 cm and 1.4 x 0.5 x 0.4 cm respectively.
+ The larger lesion is inked in black the smaller lesion is inked in blue, both fragments of 05-0001D are serially sectioned and entirely submitted as follows: A-B = larger fragments, C = smaller fragments.
+ Mr. Smith's specimens were reviewed by Mrs. Jane Doe, M.D. on 2009-02-01.
+ Given .7 mg. of something.
+ Patient may be duplicate with social 018100135. John's possesive test. John Doe-Smith hyphen test.
+ Test: The NG tube was discontinued on August 16th and the patient was increased on August 17th. On August 18th the patient had stable vital signs.
+ Test: Mercy Hospital in Devils Lake, North Dakota.
+
+
+ 04/29/09 Dr. Notarealname DIAGNOSIS: Soft tissue, arm : Lipomas two . Ms. Fake Notarealname, M.D.
+ SPECIMEN SUBMITTED: SKIN ARM X 2. DIAGNOSIS: Soft tissue, arm : Lipomas two . Clinical: None noted. Gross:
+ Patient admitted at 7:30 a.m. Height: 6'01". 11,000. Given 2% milk p.o.b.i.d.
+ Other specimens collected on 1/20/91, 12/01/05, 10/6/66, 8/9/1985.
+ 5+ +K2 +3
+ For more information, call Dr. Peter Venkman at (800) 555-2368.
+ The specimen was received fresh labeled with "John Doe" and "arm lesion" and consists of two fragments of tan soft tissue measuring 1.1 x 1.1 x 1.0 cm and 1.4 x 0.5 x 0.4 cm respectively. The larger lesion is inked in black the smaller lesion is inked in blue, both fragments are serially sectioned and entirely submitted as follows: A-B = larger fragments, C = smaller fragments. 4/29/09]]>
+ </FullReportText>
+ </PathologyCase>
+ </Body>
+</Envelope>
Propchange: ctakes/sandbox/ctakes-scrubber-deid/data/input/cases/train/traincase.xml
------------------------------------------------------------------------------
svn:mime-type = text/plain
Added: ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/testcase.xml.knowtator.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/testcase.xml.knowtator.xml?rev=1500524&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/testcase.xml.knowtator.xml (added)
+++ ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/testcase.xml.knowtator.xml Sun Jul 7 19:47:51 2013
@@ -0,0 +1,286 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<annotations textSource="testcase.xml">
+ <annotation>
+ <mention id="nci_all_init_Instance_110016" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2021" end="2029" />
+ <spannedText>John Doe</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110018" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2057" end="2059" />
+ <spannedText>92</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110020" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2078" end="2088" />
+ <spannedText>1940-01-01</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110022" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2095" end="2104" />
+ <spannedText>123456789</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110024" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2109" end="2116" />
+ <spannedText>7654321</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110026" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2335" end="2343" />
+ <spannedText>05-0001D</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110028" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2469" end="2474" />
+ <spannedText>Smith</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110030" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2509" end="2517" />
+ <spannedText>Jane Doe</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110032" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2527" end="2537" />
+ <spannedText>2009-02-01</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110034" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2635" end="2644" />
+ <spannedText>018100135</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110036" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2647" end="2651" />
+ <spannedText>John</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110038" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2670" end="2684" />
+ <spannedText>John Doe-Smith</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110040" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2751" end="2762" />
+ <spannedText>August 16th</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110042" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2796" end="2807" />
+ <spannedText>August 17th</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110044" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2814" end="2825" />
+ <spannedText>August 18th</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110046" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2883" end="2897" />
+ <spannedText>Mercy Hospital</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110048" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2901" end="2926" />
+ <spannedText>Devils Lake, North Dakota</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110050" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2975" end="2983" />
+ <spannedText>04/29/09</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110052" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="2988" end="3000" />
+ <spannedText>Notarealname</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110054" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3051" end="3068" />
+ <spannedText>Fake Notarealname</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110056" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3329" end="3336" />
+ <spannedText>1/20/91</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110058" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3338" end="3346" />
+ <spannedText>12/01/05</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110060" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3348" end="3355" />
+ <spannedText>10/6/66</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110062" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3357" end="3365" />
+ <spannedText>8/9/1985</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110064" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3432" end="3445" />
+ <spannedText>Peter Venkman</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110066" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3449" end="3463" />
+ <spannedText>(800) 555-2368</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110068" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3523" end="3531" />
+ <spannedText>John Doe</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110070" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="3859" end="3866" />
+ <spannedText>4/29/09</spannedText>
+ </annotation>
+ <annotation>
+ <mention id="nci_all_init_Instance_110072" />
+ <annotator id="nci_all_init_Instance_4">britt fitch, hms</annotator>
+ <span start="531" end="541" />
+ <spannedText>2005-01-01</spannedText>
+ </annotation>
+ <classMention id="nci_all_init_Instance_110072">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110006">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110004">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110002">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110000">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110056">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110022">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110058">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110020">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110060">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110018">
+ <mentionClass id="age">age</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110062">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110016">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110064">
+ <mentionClass id="doctor">doctor</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110014">
+ <mentionClass id="age">age</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110066">
+ <mentionClass id="phone">phone</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110068">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110010">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110070">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110008">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110042">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110040">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110046">
+ <mentionClass id="hospital">hospital</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110044">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110050">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110048">
+ <mentionClass id="location">location</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110054">
+ <mentionClass id="doctor">doctor</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110052">
+ <mentionClass id="doctor">doctor</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110026">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110024">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110030">
+ <mentionClass id="doctor">doctor</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110028">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110034">
+ <mentionClass id="id">id</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110032">
+ <mentionClass id="date">date</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110038">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+ <classMention id="nci_all_init_Instance_110036">
+ <mentionClass id="patient">patient</mentionClass>
+ </classMention>
+</annotations>
+
Propchange: ctakes/sandbox/ctakes-scrubber-deid/data/input/phi/test/testcase.xml.knowtator.xml
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